CN192501

Overview
NameCN192501
Unique NameCN192501
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length717
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CN192501 vs. ExPASy Swiss-Prot
Match: Y3720_ARATH (UPF0481 protein At3g47200 OS=Arabidopsis thaliana GN=At3g47200 PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.549e-20
Identity = 54/152 (35.53%), Postives = 95/152 (62.50%), Query Frame = 1 
Query:  262 QKCCIYRVPQQIRGLNPKAHTPQLVSIGPFHHGDNEELRATEEIKIRYLEYFL---QRTEVSIETFLAYVKNKEEQLRDCYAETIRLENEDFITMVLVDAVFLIEFLLRYSFPNLVSTGDPIFTKSRLISNMWLDIWLLENQLPLFILDDLF 708
            + CCI+RVP+    LNPKA+ P++VSIGP+H+G+ + L+  ++ K R L+ FL   ++ +V     +  V + E+++R  Y+E ++    D + M+++D  F++   L  S  N+  + DPIF+   L+S++  D+ LLENQ+P F+L  L+
Sbjct:   44 ESCCIFRVPESFVALNPKAYKPKVVSIGPYHYGE-KHLQMIQQHKPRLLQLFLDEAKKKDVEENVLVKAVVDLEDKIRKSYSEELK-TGHDLMFMMVLDGCFILMVFLIMS-GNIELSEDPIFSIPWLLSSIQSDLLLLENQVPFFVLQTLY 192
The following BLAST results are available for this feature:
BLAST of CN192501 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y3720_ARATH3.549e-2035.53UPF0481 protein At3g47200 OS=Arabidopsis thaliana ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0006P22_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0006P22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN192501 ID=CN192501; Name=CN192501; organism=Citrus sinensis; type=EST; length=717bp
CTTTTTTTTGTGAGACTTGGTGTTAGCCGCTTCGGAGGAAATTGCATAAC
CCATTGAGTTCGATTATGTCAAAATAAATTTCTCTCTGTCTTTCTTCTAT
CTTATTGGGTCTGTTCCGACGTATGCACAGTACAGACAGGCTTTAGACTG
AGCAAACAAGCGGGACAGAAGATGGAGAGCGGCGAGCACCATCAATCCGT
TAATATCGACCGATTAGCAGATACCTTGAGAGGCAAGTTCAGGAGTTTGC
ATCGGTTACCCCAGAAGTGTTGCATCTACAGGGTTCCTCAGCAAATCCGG
GGTTTAAATCCGAAAGCTCACACTCCGCAATTAGTCTCCATTGGTCCCTT
TCATCACGGTGACAACGAAGAGCTAAGAGCCACGGAAGAGATTAAAATCA
GATACCTTGAATATTTTCTTCAACGAACCGAGGTAAGCATCGAGACATTT
CTTGCATATGTAAAGAACAAGGAAGAGCAATTGCGTGATTGTTATGCAGA
AACCATTAGACTTGAAAATGAAGATTTTATAACAATGGTTTTAGTGGACG
CTGTGTTTCTCATTGAGTTCTTGCTCAGATATAGCTTCCCCAATTTGGTT
TCCACTGGTGACCCCATATTCACCAAATCAAGGCTGATCTCTAACATGTG
GCTTGACATTTGGCTCTTAGAGAATCAGCTTCCGTTGTTCATTCTTGATG
ACCTGTTTAATCTTGCC
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