CN192492

Overview
NameCN192492
Unique NameCN192492
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length673
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN192492_ssr139 microsatellite CN192492_ssr139:139..150. BLAST: Citrus ESTs to Prunus persica proteins V1
CN192492_ssr12 microsatellite CN192492_ssr12:12..31. BLAST: Citrus ESTs to Prunus persica proteins V1
CN192492_ssr147 microsatellite CN192492_ssr147:147..158. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2154 contig Csv1_Contig2154:25..697. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN192492 vs. ExPASy Swiss-Prot
Match: GEML5_ARATH (GEM-like protein 5 OS=Arabidopsis thaliana GN=At5g13200 PE=1 SV=1)

HSP 1 Score: 297.745 bits (761), Expect = 3.554e-80
Identity = 137/182 (75.27%), Postives = 159/182 (87.36%), Query Frame = 2
Query:  131 PPSEEEERKKWGTHIMGAPAVPSAHPDNQKAASWNAENRQQIYHQSYVEYSPIDKPS-NNPLEPVIHAFNTWSTKAETIARNIWHNLKTGPSVSEAAWGKVNLTAKAITEGGFESLFKQIFATDPNEKLKKTFACYLSTTTGPVAGTLYLSTARVAFCSDRPLCFTAPSGQEAWSYYKVMIP 673
            P S   ++KKWGTH+MGAPA P AHPDNQ+AA+W A + QQ  +Q YV YSP++ P+ NNPLEPVI  F+TWS KAET+ARN+WHNLKTGPS+SE AWGKVNLTAKAIT+GGFESLF+QIF T+PNE LKKTFACYLSTTTGPVAGT+YLS ARVAFCSDRPL FTAPSGQE+WSYY+V++P
Sbjct:   29 PSSSSPDQKKWGTHVMGAPAAPVAHPDNQQAAAWVAGDNQQTQYQPYVIYSPVEHPTTNNPLEPVIGMFHTWSRKAETVARNLWHNLKTGPSMSETAWGKVNLTAKAITKGGFESLFRQIFGTEPNETLKKTFACYLSTTTGPVAGTVYLSNARVAFCSDRPLYFTAPSGQESWSYYRVVVP 210          
BLAST of CN192492 vs. ExPASy Swiss-Prot
Match: GEM_ARATH (GLABRA2 expression modulator OS=Arabidopsis thaliana GN=GEM PE=1 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.406e-30
Identity = 77/197 (39.09%), Postives = 108/197 (54.82%), Query Frame = 2
Query:  113 STLTEAPPSEEEERKK---WGTHIMGAPAVPSAHPDNQKAASWNAENRQQIYHQSYVEYSPIDKPSNNPLEPVIHAFNTW-------STKAETIARNIWHNLKTGPSVSEAAWGKVNLTAKAITEGGFESLFKQIFATDPNEKLKKTFACYLSTTTGPVAGTLYLSTARVAFCSDRPLCFTAPSGQEAWSYYKVMIP 673
            ST  +AP       KK   W   ++      S  PD QKAAS ++        +S  E S  D    + +E V      W       + K E++A N W +L+T PS ++AA G++  + K   EGG+E +F+Q F TDP E+L  +FACYLST+ GPV G LY+S+A++A+CSD PL +     Q  WSYYKV+IP
Sbjct:   53 STPVKAPSRTSSGSKKSVHWSPELVSG----SQEPD-QKAASSSSAGSNPYIARSPAETS--DASLKDTMETVKGVLGRWGKRVAEAAKKTESLAGNTWQHLRTAPSFADAAMGRIAQSTKVFAEGGYEKIFRQTFETDPEEQLLNSFACYLSTSAGPVMGVLYISSAKLAYCSDNPLSY-KNGDQTEWSYYKVVIP 241          
BLAST of CN192492 vs. ExPASy Swiss-Prot
Match: GEML1_ARATH (GEM-like protein 1 OS=Arabidopsis thaliana GN=FIP1 PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.124e-28
Identity = 71/170 (41.76%), Postives = 95/170 (55.88%), Query Frame = 2
Query:  185 PAVPSAHPDNQKAASWNAENRQQIYHQSYVEYSPIDKPSNNPLEPVIHAFNTW-------STKAETIARNIWHNLKTGPSVSEAAWGKVNLTAKAITEGGFESLFKQIFATDPNEKLKKTFACYLSTTTGPVAGTLYLSTARVAFCSDRPLCFTAPSGQEAWSYYKVMIP 673
            P  P   P    A +  AE+        YV  SP  +   N ++ V      W       + KAE +A N W +LKTGPSV++AA  ++    K + EGG+E +FKQ F   P+EKL KT+ACYLST+ GPV G +YLST ++AF SD PL +     Q  WSYYKV++P
Sbjct:   45 PPPPQPIPTGAAATTMPAESNP------YVSPSPAPR---NTMDSVKDTLGKWGKMAADATKKAEDLAGNFWQHLKTGPSVADAAVSRIAQGTKILAEGGYEKVFKQTFDCLPDEKLLKTYACYLSTSAGPVLGVMYLSTHKLAFSSDNPLSY-KEGEQTLWSYYKVVLP 204          
BLAST of CN192492 vs. ExPASy Swiss-Prot
Match: GEML3_ARATH (Putative GEM-like protein 3 OS=Arabidopsis thaliana GN=At4g40100 PE=3 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 2.962e-18
Identity = 57/166 (34.34%), Postives = 85/166 (51.20%), Query Frame = 2
Query:  143 EEERKKWGTHIMGAPAVPSAHPDNQKAASWNAENRQQIYHQSYVEYSPIDKPSNNPLEPVIHAFNTW-------STKAETIARNIW-HNLKTGPSVSEAAWGKVNLTAKAITEGGFESLFKQIFATDPNEKLKKTFACYLSTTTGPVAGTLYLSTARVAFCSDRPL 616
            + E   W   ++      S  PD +  +S +A        ++  E S  D      +E V      W       + KAE++A N W H L+       AA G++  + K + EGG+E +F+Q F T P E+L+ +FACYLST+ GPV G LY+STA++A+CSD  L
Sbjct:   24 DRENLHWNPELVSE----SPAPDEKALSSSSAARSNPYVARAPTETS--DASLKETMESVKGVLGRWGRRVGEAAMKAESLAGNTWQHPLR-------AAMGRIAQSTKVLAEGGYEKIFRQTFETVPEEQLQNSFACYLSTSAGPVMGVLYVSTAKLAYCSDTSL 176          
BLAST of CN192492 vs. ExPASy Swiss-Prot
Match: GEML8_ARATH (Putative GEM-like protein 8 OS=Arabidopsis thaliana GN=At5g23370 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.618e-18
Identity = 41/108 (37.96%), Postives = 66/108 (61.11%), Query Frame = 2
Query:  350 KAETIARNIWHNLKTGPSVSEAAWGKVNLTAKAITEGGFESLFKQIFATDPNEKLKKTFACYLSTTTGPVAGTLYLSTARVAFCSDRPLCFTAPSGQEAWSYYKVMIP 673
            K ++    +    K GP ++E    K++L A+ +  GG E ++K++F     EKL K + CYLSTT GP+AG L++S+ ++AFCS+R +   +P G+    +YKV IP
Sbjct:   56 KNDSFTNGVRDQDKLGPKLTETVKRKLSLGARILQMGGLEKIYKRLFKVSDEEKLFKAYQCYLSTTAGPIAGLLFISSKKIAFCSERSIKVASPQGELNRVHYKVSIP 163          
BLAST of CN192492 vs. ExPASy Swiss-Prot
Match: GEML6_ARATH (GEM-like protein 6 OS=Arabidopsis thaliana GN=At5g23350 PE=2 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.470e-17
Identity = 41/95 (43.16%), Postives = 62/95 (65.26%), Query Frame = 2
Query:  389 KTGPSVSEAAWGKVNLTAKAITEGGFESLFKQIFATDPNEKLKKTFACYLSTTTGPVAGTLYLSTARVAFCSDRPLCFTAPSGQEAWSYYKVMIP 673
            K GP ++E    K++L AK +  GG E ++K++F     EKL K + CYLSTT GP+AG L++S+ ++AFCS+R +   +P G  +  +YKV IP
Sbjct:   69 KLGPKLTETVKRKLSLGAKILQMGGLEKIYKRLFKVCDQEKLFKAYQCYLSTTAGPIAGLLFISSKKIAFCSERSIKVASPQGVLSRVHYKVSIP 163          
BLAST of CN192492 vs. ExPASy Swiss-Prot
Match: GEML7_ARATH (GEM-like protein 7 OS=Arabidopsis thaliana GN=At5g23360 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.275e-17
Identity = 41/95 (43.16%), Postives = 61/95 (64.21%), Query Frame = 2
Query:  389 KTGPSVSEAAWGKVNLTAKAITEGGFESLFKQIFATDPNEKLKKTFACYLSTTTGPVAGTLYLSTARVAFCSDRPLCFTAPSGQEAWSYYKVMIP 673
            K GP ++E    K++L AK +  GG E ++K++F     EKL K + CYLSTT G +AG L++S+ ++AFCS+R +  T+P G     +YKV IP
Sbjct:   61 KLGPKLTETVKRKLSLGAKILQMGGLEKIYKRLFKVCDKEKLFKAYQCYLSTTEGSIAGLLFISSKKIAFCSERSIKVTSPQGDLTRVHYKVSIP 155          
BLAST of CN192492 vs. ExPASy Swiss-Prot
Match: GEML4_ARATH (GEM-like protein 4 OS=Arabidopsis thaliana GN=At5g08350 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 9.529e-17
Identity = 41/108 (37.96%), Postives = 63/108 (58.33%), Query Frame = 2
Query:  350 KAETIARNIWHNLKTGPSVSEAAWGKVNLTAKAITEGGFESLFKQIFATDPNEKLKKTFACYLSTTTGPVAGTLYLSTARVAFCSDRPLCFTAPSGQEAWSYYKVMIP 673
            K +     +    K  P ++E    K++L A+ +  GG E +FK++F     EKL K + CYLSTT GP+AG L++S+ ++AFCS+R +   +P G     +YKV IP
Sbjct:   55 KTDGFTNGVRDQSKIRPKLTETVKRKLSLGARILQVGGLEKIFKRLFRVSEGEKLFKMYQCYLSTTAGPIAGLLFISSKKMAFCSERSIKVDSPQGDIIRVHYKVSIP 162          
BLAST of CN192492 vs. ExPASy Swiss-Prot
Match: GEML2_ARATH (GEM-like protein 2 OS=Arabidopsis thaliana GN=At4g01600 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.244e-16
Identity = 44/108 (40.74%), Postives = 67/108 (62.04%), Query Frame = 2
Query:  350 KAETIARNIWHNLKTGPSVSEAAWGKVNLTAKAITEGGFESLFKQIFATDPNEKLKKTFACYLSTTTGPVAGTLYLSTARVAFCSDRPLCF-TAPSGQEAWSYYKVMI 670
            KAE +   +  +LK  PS+S+AA  +++   K I EGG E +F++ F     EKL  +F CY+STT+GPV G +Y+S  R+AFCSD  +   ++  G    +YYKV++
Sbjct:   66 KAEALVGGLKDHLKFSPSISDAAMARLSQGTKMIVEGGPERVFQREFGVLAVEKLLDSFVCYISTTSGPVTGVIYISNRRIAFCSDYAIRLPSSAGGNGVAAYYKVVM 173          
The following BLAST results are available for this feature:
BLAST of CN192492 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
GEML5_ARATH3.554e-8075.27GEM-like protein 5 OS=Arabidopsis thaliana GN=At5g... [more]
GEM_ARATH4.406e-3039.09GLABRA2 expression modulator OS=Arabidopsis thalia... [more]
GEML1_ARATH4.124e-2841.76GEM-like protein 1 OS=Arabidopsis thaliana GN=FIP1... [more]
GEML3_ARATH2.962e-1834.34Putative GEM-like protein 3 OS=Arabidopsis thalian... [more]
GEML8_ARATH8.618e-1837.96Putative GEM-like protein 8 OS=Arabidopsis thalian... [more]
GEML6_ARATH1.470e-1743.16GEM-like protein 6 OS=Arabidopsis thaliana GN=At5g... [more]
GEML7_ARATH3.275e-1743.16GEM-like protein 7 OS=Arabidopsis thaliana GN=At5g... [more]
GEML4_ARATH9.529e-1737.96GEM-like protein 4 OS=Arabidopsis thaliana GN=At5g... [more]
GEML2_ARATH1.244e-1640.74GEM-like protein 2 OS=Arabidopsis thaliana GN=At4g... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0006P17_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0006P17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN192492 ID=CN192492; Name=CN192492; organism=Citrus sinensis; type=EST; length=673bp
GATCCATCAGAATTTATTTATTTATTTATTTTTGTTCTCATAGCAATAGC
CTCAACCTTCCAGTCAATCGACAACCAGCATCACCATGACAAGCACACCA
GAAAAATTGTCAAGCACTCTGACAGAAGCTCCACCTTCAGAAGAAGAAGA
AAGAAAGAAATGGGGTACCCATATCATGGGAGCGCCAGCGGTGCCTAGTG
CTCACCCAGACAATCAAAAGGCAGCCTCATGGAACGCCGAAAACCGCCAG
CAAATCTATCATCAGTCTTATGTCGAGTACTCTCCTATCGACAAGCCAAG
TAACAACCCTTTGGAGCCTGTAATTCACGCGTTCAATACTTGGAGCACCA
AAGCTGAGACCATTGCCCGCAACATCTGGCATAATCTGAAAACCGGTCCC
TCTGTGTCGGAAGCTGCATGGGGGAAGGTGAATTTGACAGCGAAAGCAAT
AACAGAGGGCGGATTTGAGTCTCTCTTCAAGCAGATTTTTGCAACTGATC
CGAATGAGAAGCTAAAGAAGACCTTTGCGTGTTATCTTTCTACAACAACT
GGTCCTGTTGCTGGAACACTCTATTTATCAACGGCCCGTGTGGCTTTTTG
CAGTGATCGTCCCTTGTGTTTTACTGCTCCATCTGGGCAGGAAGCTTGGA
GCTACTACAAGGTTATGATACCT
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