CN192489

Overview
NameCN192489
Unique NameCN192489
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length732
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2681 contig Csv1_Contig2681:138..869. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN192489 vs. ExPASy Swiss-Prot
Match: HS21C_SOLLC (Small heat shock protein, chloroplastic OS=Solanum lycopersicum GN=HSP21 PE=2 SV=1)

HSP 1 Score: 251.521 bits (641), Expect = 3.381e-66
Identity = 132/208 (63.46%), Postives = 154/208 (74.04%), Query Frame = -3
Query:  119 PCSVTLPATSRKGAYRLQAVRAQAGGENKDTSVDVHVNSG----NQGTQAERRPRRTALDILPFGLMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGGGQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXVLVIKGEHRAEEAGGDPSWSGASFSSYDTRLQLPDNCEKDKVKAELKNGVLYISIPKTNVERKVIDVQI 730
            PCSV +P+  R+   RL A   +A G+NKDTSVDVH +S     NQGT  ERRP R ALD+ PFG++DP  P RTMRQM+DTMDRL EDTM FPGR+RA G G++RTPWDI ++ENEIKMRFDMPGL            +LVIKGEH+ EE G D    G ++SSYDTRL LPDN  KDK+KAELKNGVL+ISIPKT VE+KVIDVQI
Sbjct:   31 PCSVFVPSM-RRPTTRLVA---RATGDNKDTSVDVHHSSAQGGNNQGTAVERRPTRMALDVSPFGVLDPMSPMRTMRQMIDTMDRLFEDTMTFPGRNRASGTGEIRTPWDIHDDENEIKMRFDMPGLSKEDVKVSVENDMLVIKGEHKKEEDGRDKHSWGRNYSSYDTRLSLPDNVVKDKIKAELKNGVLFISIPKTEVEKKVIDVQI 234          
BLAST of CN192489 vs. ExPASy Swiss-Prot
Match: HS22C_SOYBN (Small heat shock protein, chloroplastic (Fragment) OS=Glycine max GN=HSP22 PE=2 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 4.882e-65
Identity = 122/182 (67.03%), Postives = 148/182 (81.32%), Query Frame = -3
Query:  119 GGENKDTSVDV-HVNSGNQGTQAERRPRRTALDILPFGLMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGGGQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXVLVIKGEHRAE-EAGGDPSWSGASFSSYDTRLQLPDNCEKDKVKAELKNGVLYISIPKTNVERKVIDVQI 658
            GG+NKD SV+V HV+ G+QGT  E++PRRTA+DI PFG++DP  P R+MRQ+LDTMDR+ EDTM FPGR+   GGG++R PWDIK+EE+EI+MRFDMPGL            +LVIKG H++E E GGD SWS  ++SSYDTRL+LPDNCEKDKVKAELKNGVLYI+IPKT VERKVIDVQ+
Sbjct:    1 GGDNKDNSVEVQHVSKGDQGTAVEKKPRRTAMDISPFGILDPWSPMRSMRQILDTMDRVFEDTMTFPGRNI--GGGEIRAPWDIKDEEHEIRMRFDMPGLAKEDVKVSVEDDMLVIKGGHKSEQEHGGDDSWSSRTYSSYDTRLKLPDNCEKDKVKAELKNGVLYITIPKTKVERKVIDVQV 180          
BLAST of CN192489 vs. ExPASy Swiss-Prot
Match: HS22C_PETHY (Small heat shock protein, chloroplastic OS=Petunia hybrida GN=HSP22 PE=2 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 4.882e-65
Identity = 136/212 (64.15%), Postives = 155/212 (73.11%), Query Frame = -3
Query:  119 PCSVTLPATS---RKGAYRLQAVRAQAGGENKDTSVDVHVNSGNQG-----TQAERRPRRTALDILPFGLMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGGGQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXVLVIKGEHRAEEAGGDPSWSGASFSSYDTRLQLPDNCEKDKVKAELKNGVLYISIPKTNVERKVIDVQI 730
            P SV  P +    RK A RL A   QA G+NKDTSVDVHV++ NQG     +  ERRPRR ALD+ PFGL+DP  P RTMRQM+DTMDRL EDTM FPG SR  G G++R PWDIK++ENEIKMRFDMPGL            VLVIKGEH+ EE+G D SW G ++SSYDTRL LPDN +KDKVKAELKNGVL ISIPKT VE+KV DV+I
Sbjct:   34 PFSVCFPYSKCSVRKPASRLVA---QATGDNKDTSVDVHVSNNNQGGNNQGSAVERRPRRMALDVSPFGLLDPMSPMRTMRQMMDTMDRLFEDTMTFPG-SRNRGTGEIRAPWDIKDDENEIKMRFDMPGLSKEEVKVSVEDDVLVIKGEHKKEESGKDDSW-GRNYSSYDTRLSLPDNVDKDKVKAELKNGVLLISIPKTKVEKKVTDVEI 240          
BLAST of CN192489 vs. ExPASy Swiss-Prot
Match: HS21C_PEA (Small heat shock protein, chloroplastic OS=Pisum sativum GN=HSP21 PE=2 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 2.962e-62
Identity = 123/207 (59.42%), Postives = 153/207 (73.91%), Query Frame = -3
Query:  119 PCSVTLPATSRKGAYRLQAVRAQAGGE--NKDTSVDVH-VNSGNQGTQAERRPRRTALDILPFGLMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGGGQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXVLVIKGEHRAEEAGGDPSWSGASFSSYDTRLQLPDNCEKDKVKAELKNGVLYISIPKTNVERKVIDVQI 730
            PC  + P   +     L+ VRAQAGG+  NKD SV+VH VN  +QGT  ER+PRR+++DI PFGL+DP  P R+MRQMLDTMDR+ ED +  PGR+   GGG++R PW+IK+EE+EI+MRFDMPG+            VLVIK +HR EE GG+  WS  S+S YDTRL+LPDNCEK+KVKAELK+GVLYI+IPKT +ER VIDVQI
Sbjct:   28 PCMASFPLRRQLPRLGLRNVRAQAGGDGDNKDNSVEVHRVNKDDQGTAVERKPRRSSIDISPFGLLDPWSPMRSMRQMLDTMDRIFEDAITIPGRNI--GGGEIRVPWEIKDEEHEIRMRFDMPGVSKEDVKVSVEDDVLVIKSDHR-EENGGEDCWSRKSYSCYDTRLKLPDNCEKEKVKAELKDGVLYITIPKTKIERTVIDVQI 231          
BLAST of CN192489 vs. ExPASy Swiss-Prot
Match: HS25P_ARATH (25.3 kDa heat shock protein, chloroplastic OS=Arabidopsis thaliana GN=HSP25.3 PE=2 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 2.196e-57
Identity = 124/206 (60.19%), Postives = 143/206 (69.42%), Query Frame = -3
Query:  119 PCSVTLPATSRKGAYRLQAVRAQAGGENKDTSVDVHVNSGNQGTQAERRPR-RTALDILPFGLMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGG-GQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXVLVIKGEHRAEEAGGDPSWSGASFSSYDTRLQLPDNCEKDKVKAELKNGVLYISIPKTNVERKVIDVQI 730
            P SV+ P   RK   R   +RAQ   EN    V      GNQG+  E+RP+ R  +D+ PFGL+DP  P RTMRQMLDTMDR+ EDTM   GR+R G G  ++R PWDIKEEE+EIKMRFDMPGL            VLVIKGE + E++  D SWSG S SSY TRLQLPDNCEKDK+KAELKNGVL+I+IPKT VERKVIDVQI
Sbjct:   29 PFSVSFP---RKIPSR---IRAQDQRENSIDVVQQGQQKGNQGSSVEKRPQQRLTMDVSPFGLLDPLSPMRTMRQMLDTMDRMFEDTMPVSGRNRGGSGVSEIRAPWDIKEEEHEIKMRFDMPGLSKEDVKISVEDNVLVIKGEQKKEDS--DDSWSGRSVSSYGTRLQLPDNCEKDKIKAELKNGVLFITIPKTKVERKVIDVQI 226          
BLAST of CN192489 vs. ExPASy Swiss-Prot
Match: HS21C_WHEAT (Small heat shock protein, chloroplastic OS=Triticum aestivum GN=HSP21 PE=2 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 6.843e-51
Identity = 106/193 (54.92%), Postives = 123/193 (63.73%), Query Frame = -3
Query:  119 AQAGGENKDTSVDVHV----NSGNQ-GTQAERRPRRTALDILPFGLMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGGGQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXVLVIKGEHRAEEA-----GGDPSWSGASFSSYDTRLQLPDNCEKDKVKAELKNGVLYISIPKTNVERKVIDVQI 667
            A A  EN+D SVDV V    N+GNQ G   +RRPRR   DI PFGL+DP  P RTMRQMLDTMDRL +D + FP R       + R PWDI E+E E+KMRFDMPGL             LVI+GEH+ E       GGD  W   S SSYD RL LPD C+K +V+AELKNGVL +S+PK   ERKVIDVQ+
Sbjct:   45 ASAAQENRDNSVDVQVSQAQNAGNQQGNAVQRRPRRAGFDISPFGLVDPMSPMRTMRQMLDTMDRLFDDAVGFPTRRSPAARARRRMPWDIMEDEKEVKMRFDMPGLSREEVRVMVEDDALVIRGEHKKEAGEGQGEGGDGWWKERSVSSYDMRLALPDECDKSQVRAELKNGVLLVSVPKRETERKVIDVQV 237          
BLAST of CN192489 vs. ExPASy Swiss-Prot
Match: HS26P_ORYSJ (26.7 kDa heat shock protein, chloroplastic OS=Oryza sativa subsp. japonica GN=HSP26.7 PE=2 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 6.405e-49
Identity = 114/215 (53.02%), Postives = 139/215 (64.65%), Query Frame = -3
Query:  119 SVTLPATSRKGAYRLQAVRAQAGGENKD-TSVDVHVNS--GNQ-GTQAERRPRRT-ALD-ILPFGLMDPSFPTRTMRQMLDTMDRLLEDT-MAFPGRSRAG-GGGQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXVLVIKGEHRAEEA-----GGDPSWSGASFSSYDTRLQLPDNCEKDKVKAELKNGVLYISIPKTNVERKVIDVQI 724
            +V LP++ R      Q   A A  EN+D T+VDVHVN   GNQ G   +RRPRR+ ALD I PFGL+DP  P RTMRQMLDTMDR+ +D  + FP   R     G+VR PWD+ E++ E++MRFDMPGL             LVI+GEH+ EE       GD  W   S SSYD RL LPD C+K KV+AELKNGVL +++PKT VERKVIDVQ+
Sbjct:   29 TVGLPSSGRAR----QLAVASAAQENRDNTAVDVHVNQDGGNQQGNAVQRRPRRSSALDGISPFGLVDPMSPMRTMRQMLDTMDRIFDDVALGFPATPRRSLATGEVRMPWDVMEDDKEVRMRFDMPGLSREEVKVMVEDDALVIRGEHKKEEGEGAEGSGDGWWKERSVSSYDMRLALPDECDKSKVRAELKNGVLLVTVPKTEVERKVIDVQV 239          
BLAST of CN192489 vs. ExPASy Swiss-Prot
Match: HS23M_ARATH (23.6 kDa heat shock protein, mitochondrial OS=Arabidopsis thaliana GN=HSP23.6 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.539e-18
Identity = 71/198 (35.86%), Postives = 103/198 (52.02%), Query Frame = -3
Query:  137 SVTLPATSRKGAYRLQAVRA-QAGGENKDTSVDVHVNSGNQGTQAERRPRRTALDILPFGLMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGGGQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXVLVIKGEHRAEEAGGDPSWSGASFSSYDTRLQLPDNCEK-DKVKAELKNGVLYISIPKTNVERK 724
            SV  PA S +  +   AVR+    GEN D  VD++  S          PRR   D     + DP  PTR++ Q+L+ MD+ +E+ +     +R  G    R  WDIKE+++ + +R DMPGL             LVI+GE + EE GG+   SG     + +R+ LPD   K D++KAE+KNGVL + IPK   + +
Sbjct:   21 SVLRPAVSSR-LFNTNAVRSYDDDGENGD-GVDLYRRSV---------PRRRG-DFFS-DVFDPFSPTRSVSQVLNLMDQFMENPLL--SATRGMGASGARRGWDIKEKDDALYLRIDMPGLSREDVKLALEQDTLVIRGEGKNEEDGGEEGESGN--RRFTSRIGLPDKIYKIDEIKAEMKNGVLKVVIPKMKEQER 201          
BLAST of CN192489 vs. ExPASy Swiss-Prot
Match: HS235_ARATH (23.5 kDa heat shock protein, mitochondrial OS=Arabidopsis thaliana GN=HSP23.5 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.222e-17
Identity = 53/138 (38.41%), Postives = 80/138 (57.97%), Query Frame = -3
Query:  137 LMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGGGQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXVLVIKGEHRAEEAGGDPSWSGASFSSYDTRLQLPDNCEK-DKVKAELKNGVLYISIPKTNVERK 547
            ++DP  PTR++ QML+ MD++ E  +     +R  G   VR  W++KE+++ + +R DMPGL             LVI+GE   EE G D S  G  F+S   R++LP+   K D++KAE+KNGVL + IPK   + +
Sbjct:   70 ILDPFTPTRSLSQMLNFMDQVSEIPLV--SATRGMGASGVRRGWNVKEKDDALHLRIDMPGLSREDVKLALEQNTLVIRGEGETEE-GEDVSGDGRRFTS---RIELPEKVYKTDEIKAEMKNGVLKVVIPKIKEDER 201          
BLAST of CN192489 vs. ExPASy Swiss-Prot
Match: HS22M_PEA (Heat shock 22 kDa protein, mitochondrial OS=Pisum sativum GN=HSP22 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.148e-16
Identity = 68/200 (34.00%), Postives = 101/200 (50.50%), Query Frame = -3
Query:  119 ATSRKGAYRLQAVRAQAGGENKDTSVDVHVNSGNQGTQAERRPRRTALDILPFGLMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGGGQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXVLVIKGEHRAEEAGGDPSWSGASFSSYDTRLQLPDNCEK-DKVKAELKNGVLYISIPKTNVERK--VIDVQI 709
            A+S   ++   A+R Q    + D +VDV+ +S          PR    D+L   + DP  P R++ Q+L+ +D LL D       SR G        WD +E E+ + +R DMPGL             L IKGE  A+E+  +   SG  FSS   R+ LP+   K D +KAE+KNGVL +++PK   E +  VI+V++
Sbjct:   25 ASSASRSFNTNAMR-QYDQHSDDRNVDVYRHSF---------PRTRRDDLLLSDVFDPFSPPRSLSQVLNMVD-LLTDNPVLSAASRRG--------WDARETEDALFLRLDMPGLGKEDVKISVEQNTLTIKGEEGAKES-EEKEKSGRRFSS---RIDLPEKLYKIDVIKAEMKNGVLKVTVPKMKEEERNNVINVKV 201          
The following BLAST results are available for this feature:
BLAST of CN192489 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
HS21C_SOLLC3.381e-6663.46Small heat shock protein, chloroplastic OS=Solanum... [more]
HS22C_SOYBN4.882e-6567.03Small heat shock protein, chloroplastic (Fragment)... [more]
HS22C_PETHY4.882e-6564.15Small heat shock protein, chloroplastic OS=Petunia... [more]
HS21C_PEA2.962e-6259.42Small heat shock protein, chloroplastic OS=Pisum s... [more]
HS25P_ARATH2.196e-5760.1925.3 kDa heat shock protein, chloroplastic OS=Arab... [more]
HS21C_WHEAT6.843e-5154.92Small heat shock protein, chloroplastic OS=Triticu... [more]
HS26P_ORYSJ6.405e-4953.0226.7 kDa heat shock protein, chloroplastic OS=Oryz... [more]
HS23M_ARATH1.539e-1835.8623.6 kDa heat shock protein, mitochondrial OS=Arab... [more]
HS235_ARATH2.222e-1738.4123.5 kDa heat shock protein, mitochondrial OS=Arab... [more]
HS22M_PEA7.148e-1634.00Heat shock 22 kDa protein, mitochondrial OS=Pisum ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0006P16_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0006P16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN192489 ID=CN192489; Name=CN192489; organism=Citrus sinensis; type=EST; length=732bp
TTTTTTTTTTTTTTTTACATAAATTTCTCAATTTATTTATGCACTTAAAA
AGCTGGACATGTAGATCACAAAACCTTAACATACACATTGCGCTAGGCAC
ACATCATTATAATTACAGAATCTGAACATCAATGACCTTGCGCTCCACAT
TGGTCTTAGGAATTGAAATGTAAAGAACACCATTCTTGAGCTCTGCCTTG
ACCTTATCTTTCTCACAGTTATCAGGAAGCTGGAGACGAGTATCGTAAGA
GCTAAAACTTGCACCAGACCAACTCGGATCACCTCCAGCTTCTTCTGCCC
TGTGCTCTCCTTTAATGACAAGGACATCATCTTCCACCGACACTTTGACA
TCCTCCTTAGAGAGTCCAGGCATGTCAAATCTCATTTTGATCTCATTTTC
CTCCTCTTTGATGTCCCACGGTGTTCTCACCTGGCCTCCCCCGCCAGCCC
GGCTCCTCCCCGGAAAAGCCATCGTATCCTCTAATAGACGGTCCATTGTG
TCCAGCATCTGCCGCATTGTCCTCGTTGGAAACGAGGGATCCATCAAACC
GAAAGGTAAAATATCGAGAGCCGTTCTTCGAGGCCTCCTCTCCGCTTGGG
TTCCTTGGTTACCGGAATTAACATGGACGTCAACCGAAGTATCCTTGTTC
TCCCCACCAGCCTGAGCTCTCACGGCTTGTAGCCGATAGGCGCCTTTCCT
TGACGTTGCCGGTAAGGTTACCGAGCATGGCG
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