CN192474

Overview
NameCN192474
Unique NameCN192474
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length798
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2909 contig Csv1_Contig2909:1..798. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN192474 vs. ExPASy Swiss-Prot
Match: NAK_ARATH (Probable serine/threonine-protein kinase NAK OS=Arabidopsis thaliana GN=NAK PE=2 SV=2)

HSP 1 Score: 219.164 bits (557), Expect = 2.153e-56
Identity = 107/170 (62.94%), Postives = 128/170 (75.29%), Query Frame = 3
Query:  288 MGACCSNRIKAETPSHTDVNXXXXXXXXXXXXXXXXXXXXXXLPQTPRSEGEILQSSNIKNFSYSDLKTATRNFRPDSVLGEGGFGSVFKGWVDEHSLTSTRPGTGMLIAVKRLNQEGFQGHKEWLTEINYLGQLHHPNLVKLVGYCLKDDHRLLVYEFMPRGSVENPLF 797
            MG C SNRIK +  S T ++                          PR+EGEILQ++N+KNFS S+LK+ATRNFRPDSV+GEGGFG VFKGW+DE SL  ++PGTG++IAVKRLNQEGFQGH+EWL EINYLGQL HPNLVKL+GYCL+++HRLLVYEFM RGS+EN LF
Sbjct:    1 MGGCFSNRIKTDIASSTWLSSKFLSRDGSKGSSTAS------FSYMPRTEGEILQNANLKNFSLSELKSATRNFRPDSVVGEGGFGCVFKGWIDESSLAPSKPGTGIVIAVKRLNQEGFQGHREWLAEINYLGQLDHPNLVKLIGYCLEEEHRLLVYEFMTRGSLENHLF 164          
BLAST of CN192474 vs. ExPASy Swiss-Prot
Match: APK1B_ARATH (Protein kinase APK1B, chloroplastic OS=Arabidopsis thaliana GN=APK1B PE=2 SV=2)

HSP 1 Score: 215.698 bits (548), Expect = 2.380e-55
Identity = 102/170 (60.00%), Postives = 129/170 (75.88%), Query Frame = 3
Query:  288 MGACCSNRIKAETPSHTDVNXXXXXXXXXXXXXXXXXXXXXXLPQTPRSEGEILQSSNIKNFSYSDLKTATRNFRPDSVLGEGGFGSVFKGWVDEHSLTSTRPGTGMLIAVKRLNQEGFQGHKEWLTEINYLGQLHHPNLVKLVGYCLKDDHRLLVYEFMPRGSVENPLF 797
            MG C S +IKA +P  +                         +   PR+EGEILQS N+K+F++++LK ATRNFRPDSVLGEGGFGSVFKGW+DE +LT+++PGTG++IAVK+LNQ+G+QGH+EWL E+NYLGQ  HPNLVKL+GYCL+D+HRLLVYEFMPRGS+EN LF
Sbjct:    1 MGICLSAQIKAVSPGASP-----KYMSSEANDSLGSKSSSVSIRTNPRTEGEILQSPNLKSFTFAELKAATRNFRPDSVLGEGGFGSVFKGWIDEQTLTASKPGTGVVIAVKKLNQDGWQGHQEWLAEVNYLGQFSHPNLVKLIGYCLEDEHRLLVYEFMPRGSLENHLF 165          
BLAST of CN192474 vs. ExPASy Swiss-Prot
Match: APK1A_ARATH (Protein kinase APK1A, chloroplastic OS=Arabidopsis thaliana GN=APK1A PE=2 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 3.437e-54
Identity = 94/125 (75.20%), Postives = 117/125 (93.60%), Query Frame = 3
Query:  423 TPRSEGEILQSSNIKNFSYSDLKTATRNFRPDSVLGEGGFGSVFKGWVDEHSLTSTRPGTGMLIAVKRLNQEGFQGHKEWLTEINYLGQLHHPNLVKLVGYCLKDDHRLLVYEFMPRGSVENPLF 797
            +PR+EGEILQS N+K+FS+++LK+ATRNFRPDSVLGEGGFG VFKGW+DE SLT++RPGTG++IAVK+LNQ+G+QGH+EWL E+NYLGQ  H +LVKL+GYCL+D+HRLLVYEFMPRGS+EN LF
Sbjct:   40 SPRTEGEILQSPNLKSFSFAELKSATRNFRPDSVLGEGGFGCVFKGWIDEKSLTASRPGTGLVIAVKKLNQDGWQGHQEWLAEVNYLGQFSHRHLVKLIGYCLEDEHRLLVYEFMPRGSLENHLF 164          
BLAST of CN192474 vs. ExPASy Swiss-Prot
Match: BIK1_ARATH (Serine/threonine-protein kinase BIK1 OS=Arabidopsis thaliana GN=BIK1 PE=1 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 8.466e-53
Identity = 92/123 (74.80%), Postives = 114/123 (92.68%), Query Frame = 3
Query:  429 RSEGEILQSSNIKNFSYSDLKTATRNFRPDSVLGEGGFGSVFKGWVDEHSLTSTRPGTGMLIAVKRLNQEGFQGHKEWLTEINYLGQLHHPNLVKLVGYCLKDDHRLLVYEFMPRGSVENPLF 797
            ++EGEIL S+ +K+F++++LK ATRNFRPDSV+GEGGFG VFKGW+DE +LT T+PGTG++IAVK+LNQEGFQGH+EWLTEINYLGQL HPNLVKL+GYCL+D+HRLLVYEFM +GS+EN LF
Sbjct:   41 KTEGEILSSTPVKSFTFNELKLATRNFRPDSVIGEGGFGCVFKGWLDESTLTPTKPGTGLVIAVKKLNQEGFQGHREWLTEINYLGQLSHPNLVKLIGYCLEDEHRLLVYEFMQKGSLENHLF 163          
BLAST of CN192474 vs. ExPASy Swiss-Prot
Match: APK2B_ARATH (Protein kinase 2B, chloroplastic OS=Arabidopsis thaliana GN=APK2B PE=1 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.352e-50
Identity = 88/125 (70.40%), Postives = 113/125 (90.40%), Query Frame = 3
Query:  423 TPRSEGEILQSSNIKNFSYSDLKTATRNFRPDSVLGEGGFGSVFKGWVDEHSLTSTRPGTGMLIAVKRLNQEGFQGHKEWLTEINYLGQLHHPNLVKLVGYCLKDDHRLLVYEFMPRGSVENPLF 797
            TPR+EGEIL S N+K F++++LK ATRNFRPDS+LGEGGFG VFKGW+D  +LT+++PG+G+++AVK+L  EG+QGHKEWLTE+NYLGQL HPNLVKLVGYC++ ++RLLVYEFMP+GS+EN LF
Sbjct:   55 TPRTEGEILSSPNLKAFTFNELKNATRNFRPDSLLGEGGFGYVFKGWIDGTTLTASKPGSGIVVAVKKLKTEGYQGHKEWLTEVNYLGQLSHPNLVKLVGYCVEGENRLLVYEFMPKGSLENHLF 179          
BLAST of CN192474 vs. ExPASy Swiss-Prot
Match: APK2A_ARATH (Protein kinase 2A, chloroplastic OS=Arabidopsis thaliana GN=APK2A PE=1 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.818e-48
Identity = 86/125 (68.80%), Postives = 110/125 (88.00%), Query Frame = 3
Query:  423 TPRSEGEILQSSNIKNFSYSDLKTATRNFRPDSVLGEGGFGSVFKGWVDEHSLTSTRPGTGMLIAVKRLNQEGFQGHKEWLTEINYLGQLHHPNLVKLVGYCLKDDHRLLVYEFMPRGSVENPLF 797
            T R+EGEIL S N+K F++++LK AT+NFR D++LGEGGFG VFKGW+D+ SLT++RPG+G+++AVK+L  EGFQGHKEWLTE+NYLGQL HPNLV LVGYC + ++RLLVYEFMP+GS+EN LF
Sbjct:   58 TLRTEGEILSSPNLKAFTFNELKNATKNFRQDNLLGEGGFGCVFKGWIDQTSLTASRPGSGIVVAVKQLKPEGFQGHKEWLTEVNYLGQLSHPNLVLLVGYCAEGENRLLVYEFMPKGSLENHLF 182          
BLAST of CN192474 vs. ExPASy Swiss-Prot
Match: Y3545_ARATH (Probable receptor-like protein kinase At3g55450 OS=Arabidopsis thaliana GN=At3g55450 PE=1 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 4.807e-48
Identity = 86/123 (69.92%), Postives = 109/123 (88.62%), Query Frame = 3
Query:  429 RSEGEILQSSNIKNFSYSDLKTATRNFRPDSVLGEGGFGSVFKGWVDEHSLTSTRPGTGMLIAVKRLNQEGFQGHKEWLTEINYLGQLHHPNLVKLVGYCLKDDHRLLVYEFMPRGSVENPLF 797
            ++EGEIL S+ +K+FS+++LK ATRNFR DSV+GEGGFG VF+GW+DE +LT T+  +G++IAVKRLN +GFQGH+EWLTEINYLGQL HPNLVKL+GYCL+D+ RLLVYEFM +GS+EN LF
Sbjct:   35 KTEGEILSSTTVKSFSFNELKLATRNFRSDSVVGEGGFGCVFRGWLDETTLTPTKSSSGLVIAVKRLNPDGFQGHREWLTEINYLGQLSHPNLVKLIGYCLEDEQRLLVYEFMHKGSLENHLF 157          
BLAST of CN192474 vs. ExPASy Swiss-Prot
Match: CX32_ARATH (Probable serine/threonine-protein kinase Cx32, chloroplastic OS=Arabidopsis thaliana GN=At4g35600 PE=1 SV=2)

HSP 1 Score: 160.229 bits (404), Expect = 1.187e-38
Identity = 70/120 (58.33%), Postives = 97/120 (80.83%), Query Frame = 3
Query:  438 GEILQSSNIKNFSYSDLKTATRNFRPDSVLGEGGFGSVFKGWVDEHSLTSTRPGTGMLIAVKRLNQEGFQGHKEWLTEINYLGQLHHPNLVKLVGYCLKDDHRLLVYEFMPRGSVENPLF 797
            G++L+S N+K +++ DLKTAT+NF+PDS+LG+GGFG V++GWVD  +L  +R G+GM++A+KRLN E  QG  EW +E+N+LG L H NLVKL+GYC +D   LLVYEFMP+GS+E+ LF
Sbjct:   63 GKLLESPNLKVYNFLDLKTATKNFKPDSMLGQGGFGKVYRGWVDATTLAPSRVGSGMIVAIKRLNSESVQGFAEWRSEVNFLGMLSHRNLVKLLGYCREDKELLLVYEFMPKGSLESHLF 182          
BLAST of CN192474 vs. ExPASy Swiss-Prot
Match: PBS1_ARATH (Serine/threonine-protein kinase PBS1 OS=Arabidopsis thaliana GN=PBS1 PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.172e-26
Identity = 57/108 (52.78%), Postives = 75/108 (69.44%), Query Frame = 3
Query:  471 FSYSDLKTATRNFRPDSVLGEGGFGSVFKGWVDEHSLTSTRPGTGMLIAVKRLNQEGFQGHKEWLTEINYLGQLHHPNLVKLVGYCLKDDHRLLVYEFMPRGSVENPL 794
            F++ +L  AT NF PD+ LGEGGFG V+KG +D          TG ++AVK+L++ G QG++E+L E+  L  LHHPNLV L+GYC   D RLLVYEFMP GS+E+ L
Sbjct:   74 FAFRELAAATMNFHPDTFLGEGGFGRVYKGRLDS---------TGQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHL 172          
BLAST of CN192474 vs. ExPASy Swiss-Prot
Match: Y5707_ARATH (Probable receptor-like protein kinase At5g47070 OS=Arabidopsis thaliana GN=At5g47070 PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 9.754e-25
Identity = 58/131 (44.27%), Postives = 88/131 (67.18%), Query Frame = 3
Query:  423 TPRSEGEIL--QSSNIKNFSYSDLKTATRNFRPDSVLGEGGFGSVFKGWVDEHSLTSTRPGTGMLIAVKRLNQEGFQGHKEWLTEINYLGQLHHPNLVKLVGYCLKDD----HRLLVYEFMPRGSVENPLF 797
            +PRS  ++   +  N++ FSY +L  AT  F    V+GEGGFG V+KG +  +  +S  P   +++A+K+LN++G QGHK+WL E+ +LG ++HPN+VKL+GYC +D      RLLVYE+M   S+E+ LF
Sbjct:   56 SPRSIKDLYTEREQNLRVFSYEELSKATYVFSRKLVIGEGGFGIVYKGKILSNGDSSDPP---LVVAIKKLNRQGLQGHKQWLAEVQFLGVVNHPNVVKLIGYCSEDGETGIERLLVYEYMSNRSLEDHLF 183          
The following BLAST results are available for this feature:
BLAST of CN192474 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 158
Match NameE-valueIdentityDescription
NAK_ARATH2.153e-5662.94Probable serine/threonine-protein kinase NAK OS=Ar... [more]
APK1B_ARATH2.380e-5560.00Protein kinase APK1B, chloroplastic OS=Arabidopsis... [more]
APK1A_ARATH3.437e-5475.20Protein kinase APK1A, chloroplastic OS=Arabidopsis... [more]
BIK1_ARATH8.466e-5374.80Serine/threonine-protein kinase BIK1 OS=Arabidopsi... [more]
APK2B_ARATH1.352e-5070.40Protein kinase 2B, chloroplastic OS=Arabidopsis th... [more]
APK2A_ARATH2.818e-4868.80Protein kinase 2A, chloroplastic OS=Arabidopsis th... [more]
Y3545_ARATH4.807e-4869.92Probable receptor-like protein kinase At3g55450 OS... [more]
CX32_ARATH1.187e-3858.33Probable serine/threonine-protein kinase Cx32, chl... [more]
PBS1_ARATH5.172e-2652.78Serine/threonine-protein kinase PBS1 OS=Arabidopsi... [more]
Y5707_ARATH9.754e-2544.27Probable receptor-like protein kinase At5g47070 OS... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS06_0006P08_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0006P08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN192474 ID=CN192474; Name=CN192474; organism=Citrus sinensis; type=EST; length=798bp
CCCCCGCTTTTACAAAAAGAGGGGAAAAGCAAACAAGTAATCAACAATAG
CAAAGACCTTTTTTTTTTTTTTTAACTTCTCATTTGGGTGCTTCTTAATC
CAGAATTGAACCCAAATCCCACCCTAAAAGTGAAAAAGATCACACCCAAA
ATCTATTTGTGATCATTTGTTGAGTTGGAGTTCTGGGTTCTGTTTGTTTC
ATTGAGGATAGAAAGAGAGAGTACAAAACAAAACCATAAAGGAAAAAAAT
TTCTTTAAATAAGATCTGGGTATTTTGTTTTGTCTGGATGGGAGCTTGCT
GTAGCAACAGGATTAAGGCTGAGACTCCTTCTCATACTGATGTGAATTCA
AAATATTCTAGCAGAGATGTAAAGAGTTTAAGCAGTTCCAGTGGTAAGGC
CTCTTCATTTTCCCTGCCTCAAACACCACGGAGTGAGGGTGAGATCTTGC
AGTCATCAAATATAAAGAATTTCAGCTACAGCGACCTTAAGACAGCTACC
AGAAACTTCCGCCCTGATAGTGTTTTGGGAGAAGGCGGCTTTGGTTCTGT
CTTCAAAGGATGGGTTGACGAGCATTCACTTACTTCTACAAGGCCTGGTA
CTGGCATGTTAATTGCTGTGAAGAGGCTTAACCAAGAAGGTTTCCAGGGT
CACAAGGAATGGCTAACAGAAATTAACTATCTTGGGCAGTTGCATCATCC
TAATCTTGTGAAGTTGGTTGGTTACTGTTTAAAGGATGATCACCGGCTTC
TGGTTTATGAGTTCATGCCTCGAGGTAGCGTGGAAAATCCTCTATTTA
back to top