CX302372

Overview
NameCX302372
Unique NameCX302372
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length685
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX302372 vs. ExPASy Swiss-Prot
Match: VATL_PHAAU (V-type proton ATPase 16 kDa proteolipid subunit OS=Phaseolus aureus PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.128e-31
Identity = 74/103 (71.84%), Postives = 74/103 (71.84%), Query Frame = 2
Query:    2 GVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSRAGQSRAD 310
            GVLGIYGLIIAVIISTGINPKAKSYYLFDGY                 MAIGIVGDAGVRANAQQPKLFVGM            YGLIVGIILSSRAGQSRAD
Sbjct:   62 GVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 164          
BLAST of CX302372 vs. ExPASy Swiss-Prot
Match: VATL_MESCR (V-type proton ATPase 16 kDa proteolipid subunit OS=Mesembryanthemum crystallinum GN=VMAC1 PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.128e-31
Identity = 74/103 (71.84%), Postives = 74/103 (71.84%), Query Frame = 2
Query:    2 GVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSRAGQSRAD 310
            GVLGIYGLIIAVIISTGINPKAKSYYLFDGY                 MAIGIVGDAGVRANAQQPKLFVGM            YGLIVGIILSSRAGQSRAD
Sbjct:   63 GVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 165          
BLAST of CX302372 vs. ExPASy Swiss-Prot
Match: VATL_KALDA (V-type proton ATPase 16 kDa proteolipid subunit OS=Kalanchoe daigremontiana PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.128e-31
Identity = 74/103 (71.84%), Postives = 74/103 (71.84%), Query Frame = 2
Query:    2 GVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSRAGQSRAD 310
            GVLGIYGLIIAVIISTGINPKAKSYYLFDGY                 MAIGIVGDAGVRANAQQPKLFVGM            YGLIVGIILSSRAGQSRAD
Sbjct:   63 GVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 165          
BLAST of CX302372 vs. ExPASy Swiss-Prot
Match: VATL_BETVU (V-type proton ATPase 16 kDa proteolipid subunit OS=Beta vulgaris GN=VMAC1 PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.128e-31
Identity = 74/103 (71.84%), Postives = 74/103 (71.84%), Query Frame = 2
Query:    2 GVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSRAGQSRAD 310
            GVLGIYGLIIAVIISTGINPKAKSYYLFDGY                 MAIGIVGDAGVRANAQQPKLFVGM            YGLIVGIILSSRAGQSRAD
Sbjct:   63 GVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 165          
BLAST of CX302372 vs. ExPASy Swiss-Prot
Match: VATL_GOSHI (V-type proton ATPase 16 kDa proteolipid subunit OS=Gossypium hirsutum GN=CVA16-2 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.201e-30
Identity = 73/103 (70.87%), Postives = 74/103 (71.84%), Query Frame = 2
Query:    2 GVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSRAGQSRAD 310
            GVLGIYGLIIAVIISTGINPKAKSYYLFDGY                 MAIGIVGDAGVRANAQQPKLFVGM            YGLIVGIILSSRAGQSRA+
Sbjct:   63 GVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAE 165          
BLAST of CX302372 vs. ExPASy Swiss-Prot
Match: VATL4_ARATH (V-type proton ATPase 16 kDa proteolipid subunit c4 OS=Arabidopsis thaliana GN=VHA-C4 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.201e-30
Identity = 73/103 (70.87%), Postives = 74/103 (71.84%), Query Frame = 2
Query:    2 GVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSRAGQSRAD 310
            GVLGIYGLIIAVIISTGINPKAKSYYLFDGY                 MAIGIVGDAGVRANAQQPKLFVGM            YGLIVGIILSSRAGQSRA+
Sbjct:   64 GVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAE 166          
BLAST of CX302372 vs. ExPASy Swiss-Prot
Match: VATL2_ARATH (V-type proton ATPase 16 kDa proteolipid subunit c2 OS=Arabidopsis thaliana GN=VHA-C2 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.201e-30
Identity = 73/103 (70.87%), Postives = 74/103 (71.84%), Query Frame = 2
Query:    2 GVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSRAGQSRAD 310
            GVLGIYGLIIAVIISTGINPKAKSYYLFDGY                 MAIGIVGDAGVRANAQQPKLFVGM            YGLIVGIILSSRAGQSRA+
Sbjct:   63 GVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAE 165          
BLAST of CX302372 vs. ExPASy Swiss-Prot
Match: VATL1_ARATH (V-type proton ATPase 16 kDa proteolipid subunit c1/c3/c5 OS=Arabidopsis thaliana GN=VHA-C1 PE=1 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.201e-30
Identity = 73/103 (70.87%), Postives = 74/103 (71.84%), Query Frame = 2
Query:    2 GVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSRAGQSRAD 310
            GVLGIYGLIIAVIISTGINPKAKSYYLFDGY                 MAIGIVGDAGVRANAQQPKLFVGM            YGLIVGIILSSRAGQSRA+
Sbjct:   62 GVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAE 164          
BLAST of CX302372 vs. ExPASy Swiss-Prot
Match: VATL_ORYSJ (V-type proton ATPase 16 kDa proteolipid subunit OS=Oryza sativa subsp. japonica GN=VATP-P1 PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.569e-30
Identity = 73/103 (70.87%), Postives = 73/103 (70.87%), Query Frame = 2
Query:    2 GVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSRAGQSRAD 310
            GVLGIYGLIIAVIISTGINPKAK YYLFDGY                 MAIGIVGDAGVRANAQQPKLFVGM            YGLIVGIILSSRAGQSRAD
Sbjct:   63 GVLGIYGLIIAVIISTGINPKAKPYYLFDGYAHLSSGLACGLAGLAAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 165          
BLAST of CX302372 vs. ExPASy Swiss-Prot
Match: VATL_ORYSI (V-type proton ATPase 16 kDa proteolipid subunit OS=Oryza sativa subsp. indica GN=VATP-P1 PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.569e-30
Identity = 73/103 (70.87%), Postives = 73/103 (70.87%), Query Frame = 2
Query:    2 GVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSRAGQSRAD 310
            GVLGIYGLIIAVIISTGINPKAK YYLFDGY                 MAIGIVGDAGVRANAQQPKLFVGM            YGLIVGIILSSRAGQSRAD
Sbjct:   63 GVLGIYGLIIAVIISTGINPKAKPYYLFDGYAHLSSGLACGLAGLAAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 165          
The following BLAST results are available for this feature:
BLAST of CX302372 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
VATL_PHAAU4.128e-3171.84V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_MESCR4.128e-3171.84V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_KALDA4.128e-3171.84V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_BETVU4.128e-3171.84V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_GOSHI1.201e-3070.87V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL4_ARATH1.201e-3070.87V-type proton ATPase 16 kDa proteolipid subunit c4... [more]
VATL2_ARATH1.201e-3070.87V-type proton ATPase 16 kDa proteolipid subunit c2... [more]
VATL1_ARATH1.201e-3070.87V-type proton ATPase 16 kDa proteolipid subunit c1... [more]
VATL_ORYSJ1.569e-3070.87V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_ORYSI1.569e-3070.87V-type proton ATPase 16 kDa proteolipid subunit OS... [more]

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Properties
Property NameValue
Genbank descriptionC08020A09SK PhyRootSw1 Citrus sinensis cDNA clone C08020A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX302372 ID=CX302372; Name=CX302372; organism=Citrus sinensis; type=EST; length=685bp
GGGAGTTTTGGGTATTTACGGTTTGATTATTGCTGTTATTATTAGTACCG
GAATTAACCCTAAGGCCAAATCTTATTACCTTTTCGATGGCTACGCGCAT
CTCTCTTCTGGCCTCGCTTGTGGCCTTGCTGGTCTCTCCGCTGGTATGGC
AATTGGGATCGTCGGTGATGCTGGTGTCAGAGCTAATGCTCAACAGCCGA
AGCTTTTCGTTGGGATGATCCTCATTCTGATCTTTGCCGAAGCGCTGGCA
CTTTATGGACTTATTGTTGGTATCATTCTTTCTTCTCGTGCTGGTCAGTC
AAGAGCAGACTAGAAGAGGATGCTTTGCTTGGTGGTTATTTGGCCTGTTG
TGTTCCATTAAGAAGAATTCAGTTCATATTGCATGTGACGGGAGGTGGTA
GTCTGCGTTGGGTAGTGTTTTTCTTTTTCGACTTAAAAAATTATTGTCTG
TGGTGTGATTGTTCAACCAGATTGATTCGATTTTTAATGGTATGGAGAAT
GTAGAATTAGGAATTAGTTTCTCCCATTAATAAAGTCATGCTGTCATTGT
TTAGTTTAATGTTAAAATGCTGTATTTTTTGGGATCCATTTATAGGTTGT
TGATACCCTAATAATCGCTTGTAATGTTTTCTGAGACTCTCTTTACTTGA
TCTCCAGTTTTGTAAAGCCCAAATTGTGTTGTGGG
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