CN192446

Overview
NameCN192446
Unique NameCN192446
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length592
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4968 contig Csv1_Contig4968:33..624. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN192446 vs. ExPASy Swiss-Prot
Match: METK2_CATRO (S-adenosylmethionine synthetase 2 OS=Catharanthus roseus GN=SAMS2 PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 5.310e-31
Identity = 65/76 (85.53%), Postives = 67/76 (88.16%), Query Frame = -1
Query:  356 PFSVC*PLIELEKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLKYEK 583
            P SV        KIPDKEIL+IVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLK+EK
Sbjct:  315 PLSVFVDTYGTGKIPDKEILKIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLKFEK 390          
BLAST of CN192446 vs. ExPASy Swiss-Prot
Match: METK1_SOLTU (S-adenosylmethionine synthetase 1 OS=Solanum tuberosum GN=METK1 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 5.310e-31
Identity = 63/79 (79.75%), Postives = 69/79 (87.34%), Query Frame = -1
Query:  347 PFSVC*PLIELEKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLKYEKPQE 583
            P SV        KIPDKEIL+IVKENFDFRPGM++INLDLKRGGN RFLKTAAYGHFGR+DPDFTWEVVKPLK+EKPQ+
Sbjct:  315 PLSVFVDTYGTGKIPDKEILKIVKENFDFRPGMMSINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQD 393          
BLAST of CN192446 vs. ExPASy Swiss-Prot
Match: METK_MEDTR (S-adenosylmethionine synthetase OS=Medicago truncatula GN=METK PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 6.935e-31
Identity = 61/66 (92.42%), Postives = 65/66 (98.48%), Query Frame = -1
Query:  350 KIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLKYEKPQ 547
            KIPD+EIL+IVKENFDFRPGMI INLDLKRGGNSRFLKTAAYGHFGR+DPDFTWEVVKPLK+EKPQ
Sbjct:  328 KIPDREILQIVKENFDFRPGMITINLDLKRGGNSRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQ 393          
BLAST of CN192446 vs. ExPASy Swiss-Prot
Match: METK2_ELAUM (S-adenosylmethionine synthetase 2 OS=Elaeagnus umbellata GN=SAMS2 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 9.058e-31
Identity = 60/66 (90.91%), Postives = 64/66 (96.97%), Query Frame = -1
Query:  350 KIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLKYEKPQ 547
            KIPDKEIL+IVKENFDFRPGMI INLDLKRGGN RFLKTAAYGHFGR+DPDFTWE+VKPLK+EKPQ
Sbjct:  327 KIPDKEILKIVKENFDFRPGMITINLDLKRGGNDRFLKTAAYGHFGRDDPDFTWEIVKPLKWEKPQ 392          
BLAST of CN192446 vs. ExPASy Swiss-Prot
Match: METK_PHALU (S-adenosylmethionine synthetase OS=Phaseolus lunatus GN=SAMS PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.545e-30
Identity = 64/76 (84.21%), Postives = 67/76 (88.16%), Query Frame = -1
Query:  356 PFSVC*PLIELEKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLKYEK 583
            P SV        KIPDKEIL+IVKENFDFRPGMI+INLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLK+EK
Sbjct:  316 PLSVFVDTYGTGKIPDKEILKIVKENFDFRPGMISINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLKWEK 391          
BLAST of CN192446 vs. ExPASy Swiss-Prot
Match: METK1_SOLLC (S-adenosylmethionine synthetase 1 OS=Solanum lycopersicum GN=SAM1 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.545e-30
Identity = 62/79 (78.48%), Postives = 69/79 (87.34%), Query Frame = -1
Query:  347 PFSVC*PLIELEKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLKYEKPQE 583
            P SV        KIPD+EIL+IVKENFDFRPGM++INLDLKRGGN RFLKTAAYGHFGR+DPDFTWEVVKPLK+EKPQ+
Sbjct:  315 PLSVFVDTYGTGKIPDREILKIVKENFDFRPGMMSINLDLKRGGNRRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQD 393          
BLAST of CN192446 vs. ExPASy Swiss-Prot
Match: METK4_VITVI (S-adenosylmethionine synthetase 4 OS=Vitis vinifera GN=METK4 PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 3.442e-30
Identity = 64/79 (81.01%), Postives = 67/79 (84.81%), Query Frame = -1
Query:  347 PFSVC*PLIELEKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLKYEKPQE 583
            P SV        KIPDKEIL+IVKE+FDFRPGMIAINLDLKRGGN RFLKTAAYGHFGR+DPDFTWEVVKPLK EK QE
Sbjct:  315 PLSVFVDTYATGKIPDKEILKIVKESFDFRPGMIAINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKAEKAQE 393          
BLAST of CN192446 vs. ExPASy Swiss-Prot
Match: METK5_VITVI (S-adenosylmethionine synthetase 5 OS=Vitis vinifera GN=METK5 PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 5.871e-30
Identity = 60/64 (93.75%), Postives = 63/64 (98.44%), Query Frame = -1
Query:  356 KIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLKYEK 547
            KIPDKEIL+IVKENFDFRPGMIAINLDLKRGGN RFLKTAAYGHFGR+DPDFTWEVVKPLK+EK
Sbjct:  327 KIPDKEILKIVKENFDFRPGMIAINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEK 390          
BLAST of CN192446 vs. ExPASy Swiss-Prot
Match: METK1_DAUCA (S-adenosylmethionine synthetase 1 OS=Daucus carota GN=SAMS1 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 5.871e-30
Identity = 59/66 (89.39%), Postives = 64/66 (96.97%), Query Frame = -1
Query:  350 KIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLKYEKPQ 547
            KIPD+EIL+IVKE FDFRPGMI+INLDLKRGGN RFLKTAAYGHFGR+DPDFTWEVVKPLK+EKPQ
Sbjct:  375 KIPDREILKIVKETFDFRPGMISINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQ 440          
BLAST of CN192446 vs. ExPASy Swiss-Prot
Match: METK2_VITVI (S-adenosylmethionine synthetase 2 OS=Vitis vinifera GN=METK2 PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 7.668e-30
Identity = 62/78 (79.49%), Postives = 67/78 (85.90%), Query Frame = -1
Query:  350 PFSVC*PLIELEKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLKYEKPQ 583
            P SV        KIPD+EIL+IVKENFDFRPGMI+INLDLKRGGN RFLKTAAYGHFGR+DPDFTWEVVKPLK+EK Q
Sbjct:  315 PLSVFVDTYGTGKIPDREILKIVKENFDFRPGMISINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKTQ 392          
The following BLAST results are available for this feature:
BLAST of CN192446 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
METK2_CATRO5.310e-3185.53S-adenosylmethionine synthetase 2 OS=Catharanthus ... [more]
METK1_SOLTU5.310e-3179.75S-adenosylmethionine synthetase 1 OS=Solanum tuber... [more]
METK_MEDTR6.935e-3192.42S-adenosylmethionine synthetase OS=Medicago trunca... [more]
METK2_ELAUM9.058e-3190.91S-adenosylmethionine synthetase 2 OS=Elaeagnus umb... [more]
METK_PHALU1.545e-3084.21S-adenosylmethionine synthetase OS=Phaseolus lunat... [more]
METK1_SOLLC1.545e-3078.48S-adenosylmethionine synthetase 1 OS=Solanum lycop... [more]
METK4_VITVI3.442e-3081.01S-adenosylmethionine synthetase 4 OS=Vitis vinifer... [more]
METK5_VITVI5.871e-3093.75S-adenosylmethionine synthetase 5 OS=Vitis vinifer... [more]
METK1_DAUCA5.871e-3089.39S-adenosylmethionine synthetase 1 OS=Daucus carota... [more]
METK2_VITVI7.668e-3079.49S-adenosylmethionine synthetase 2 OS=Vitis vinifer... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0006O11_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0006O11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN192446 ID=CN192446; Name=CN192446; organism=Citrus sinensis; type=EST; length=592bp
TTTTTTTTTTTTTTTTTAGATGAATACTCATAATTTGATTATGACCAAAA
AAATGCATTAATAGTACATTAACAAATAACAATGTTTCTCCACAAACGAG
CTCTTCTTCCATCTCTATTTCTCTTCCTAGCATATCTCATACAGGCAACT
TCTCTGTAATTCTTTCATCGACTATGACTCAATTAGACCACATATATCTT
TCTATTATGGCAAAGATAATACAAATTTATTTTTTAAAAAAAAGGCCAAG
ACCAAGAGAGAAAAAAGACATAATCTGACAGGCAGACAAAAGAACAAGTA
AATTATTGAGTTCAAACAAAGAATGAAACTGCATACTTAAATTCTACTCT
TGGGGTTTCTCATACTTGAGGGGCTTCACCACCTCCCATGTGAAGTCAGG
ATCCTCCCTTCCAAAATGCCCATATGCAGCAGTCTTCAAAAACCTGCTAT
TTCCTCCCCTCTTGAGATCCAAGTTAATGGCAATCATTCCAGGCCTGAAA
TCAAAGTTCTCCTTCACAATCCTCAGGATCTCCTTGTCCGGAATCTTTTC
CAGTTCGATAAGTGGTCAACAAACACTGAAAGGGGCTCTCCT
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