CN192418

Overview
NameCN192418
Unique NameCN192418
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length402
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10309 contig Csv1_Contig10309:14..415. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN192418 vs. ExPASy Swiss-Prot
Match: FHIT_DICDI (Bis(5'-adenosyl)-triphosphatase OS=Dictyostelium discoideum GN=fhit PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 2.979e-28
Identity = 56/99 (56.57%), Postives = 73/99 (73.74%), Query Frame = 3
Query:   93 FGPFKIDPRQVFYSTPLSYALVNLRPLLPGHVLVCPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIVPRK 389
            FGP+ I   ++F++T LS+ALVNL+P+LPGHVLVCP+R   R  DLT +E  DLWL+AQ + + +E +     + FAIQDG  AGQTV HVHIHI+PRK
Sbjct:    6 FGPWLIRQSEIFFTTELSFALVNLKPVLPGHVLVCPKRIVPRVKDLTKEEFTDLWLSAQRISSVVEEHFNGDGITFAIQDGKNAGQTVEHVHIHIIPRK 104          
BLAST of CN192418 vs. ExPASy Swiss-Prot
Match: FHIT_HUMAN (Bis(5'-adenosyl)-triphosphatase OS=Homo sapiens GN=FHIT PE=1 SV=3)

HSP 1 Score: 121.324 bits (303), Expect = 1.478e-27
Identity = 57/102 (55.88%), Postives = 72/102 (70.59%), Query Frame = 3
Query:   87 YAFGPFKIDPRQVFYSTPLSYALVNLRPLLPGHVLVCPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIVPRKA 392
            + FG   I P  VF  T LS+ALVN +P++PGHVLVCP R   RF DL  DE  DL+ T Q VGT +E +   +SL F++QDGP+AGQTV HVH+H++PRKA
Sbjct:    3 FRFGQHLIKPSVVFLKTELSFALVNRKPVVPGHVLVCPLRPVERFHDLRPDEVADLFQTTQRVGTVVEKHFHGTSLTFSMQDGPEAGQTVKHVHVHVLPRKA 104          
BLAST of CN192418 vs. ExPASy Swiss-Prot
Match: FHIT_BOVIN (Bis(5'-adenosyl)-triphosphatase OS=Bos taurus GN=FHIT PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 2.522e-27
Identity = 56/102 (54.90%), Postives = 74/102 (72.55%), Query Frame = 3
Query:   87 YAFGPFKIDPRQVFYSTPLSYALVNLRPLLPGHVLVCPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIVPRKA 392
            + FG   I P  VF  T LS+ALVN +P++PGHVLVCP R   RF D++ +E  DL+  AQ VGT +E + + +SL F++QDGP+AGQTV HVH+HI+PRKA
Sbjct:    3 FRFGQHLIKPSVVFLKTELSFALVNRKPVVPGHVLVCPLRPVERFRDMSPEEVADLFQAAQRVGTVVEKHFQGTSLTFSMQDGPEAGQTVKHVHVHILPRKA 104          
BLAST of CN192418 vs. ExPASy Swiss-Prot
Match: FHIT_MOUSE (Bis(5'-adenosyl)-triphosphatase OS=Mus musculus GN=Fhit PE=2 SV=3)

HSP 1 Score: 119.013 bits (297), Expect = 7.337e-27
Identity = 55/102 (53.92%), Postives = 72/102 (70.59%), Query Frame = 3
Query:   87 YAFGPFKIDPRQVFYSTPLSYALVNLRPLLPGHVLVCPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIVPRKA 392
            + FG   I P  VF  T LS+ALVN +P++PGHVLVCP R   RF DL  DE  DL+   Q VGT +E + + +S+ F++QDGP+AGQTV HVH+H++PRKA
Sbjct:    3 FRFGQHLIKPSVVFLKTELSFALVNRKPVVPGHVLVCPLRPVERFRDLHPDEVADLFQVTQRVGTVVEKHFQGTSITFSMQDGPEAGQTVKHVHVHVLPRKA 104          
BLAST of CN192418 vs. ExPASy Swiss-Prot
Match: FHIT_RAT (Bis(5'-adenosyl)-triphosphatase OS=Rattus norvegicus GN=Fhit PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.135e-26
Identity = 54/102 (52.94%), Postives = 72/102 (70.59%), Query Frame = 3
Query:   87 YAFGPFKIDPRQVFYSTPLSYALVNLRPLLPGHVLVCPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIVPRKA 392
            + FG   I P  VF  T LS+ALVN +P++PGHVL+CP R   RF DL  DE  DL+   Q VGT +E + + +S+ F++QDGP+AGQTV HVH+HI+PRK+
Sbjct:    3 FKFGQHLIKPSVVFLKTELSFALVNRKPVVPGHVLMCPLRPVERFRDLRPDEVADLFQVTQRVGTVVEKHFQGTSITFSMQDGPEAGQTVKHVHVHILPRKS 104          
BLAST of CN192418 vs. ExPASy Swiss-Prot
Match: NFT1_CAEEL (Nitrilase and fragile histidine triad fusion protein NitFhit OS=Caenorhabditis elegans GN=nft-1 PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.171e-24
Identity = 55/114 (48.25%), Postives = 70/114 (61.40%), Query Frame = 3
Query:   51 LFLSPKMSSIEQYAFGPFKIDPRQVFYSTPLSYALVNLRPLLPGHVLVCPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIVPRKA 392
            L ++ K S      F  F I    +FYSTP S+  VNL+P+  GHVLV P+R   R  DLT  ET DL++ A+ V   LE +H  +S    +QDG  AGQTVPHVHIHI+PR+A
Sbjct:  287 LHINEKSSETGGLKFARFNIPADHIFYSTPHSFVFVNLKPVTDGHVLVSPKRVVPRLTDLTDAETADLFIVAKKVQAMLEKHHNVTSTTICVQDGKDAGQTVPHVHIHILPRRA 400          
BLAST of CN192418 vs. ExPASy Swiss-Prot
Match: APH1_SCHPO (Bis(5'-nucleosyl)-tetraphosphatase [asymmetrical] OS=Schizosaccharomyces pombe GN=aph1 PE=1 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 5.441e-22
Identity = 54/105 (51.43%), Postives = 66/105 (62.86%), Query Frame = 3
Query:   81 EQYAFGPFKIDPRQVFYSTPLSYALVNLRPLLPGHVLVCPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIVPRKAA 395
            +Q  F  F +   QVFY T LS A VNL+P+LPGHVLV P+R   R  DLT  E  DL+ + + V   +E    AS+    IQDG  AGQTVPHVH+HI+PRK A
Sbjct:    3 KQLYFSKFPVGS-QVFYRTKLSAAFVNLKPILPGHVLVIPQRAVPRLKDLTPSELTDLFTSVRKVQQVIEKVFSASASNIGIQDGVDAGQTVPHVHVHIIPRKKA 106          
BLAST of CN192418 vs. ExPASy Swiss-Prot
Match: HNT2_YEAST (Hit family protein 2 OS=Saccharomyces cerevisiae GN=HNT2 PE=1 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 2.286e-20
Identity = 46/90 (51.11%), Postives = 64/90 (71.11%), Query Frame = 3
Query:  120 QVFYSTPLSYALVNLRPLLPGHVLVCPRRDAV-RFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIVPR 386
            QVFY +  +YALVNL+P++PGHVL+ P R  V    DLT  E++D + T Q +   ++  +KA S+  AIQDGP+AGQ+VPH+H HI+PR
Sbjct:   15 QVFYKSKYTYALVNLKPIVPGHVLIVPLRTTVLNLSDLTMPESQDYFKTLQLIHRFIKWQYKADSINVAIQDGPEAGQSVPHLHTHIIPR 104          
BLAST of CN192418 vs. ExPASy Swiss-Prot
Match: NFT1_DROME (Nitrilase and fragile histidine triad fusion protein NitFhit OS=Drosophila melanogaster GN=NitFhit PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.695e-15
Identity = 40/94 (42.55%), Postives = 55/94 (58.51%), Query Frame = 3
Query:  108 IDPRQVFYSTPLSYALVNLRPLLPGHVLVCPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIVPRK 389
            +D R +FY +   +A  NLR ++ GHVLV  +R   R   L   E  D++ T   V   LE  ++ +S    +QDG QAGQTVPHVH HI+PR+
Sbjct:  323 VDKRTIFYESEHCFAFTNLRCVVKGHVLVSTKRVTPRLCGLDCAEMADMFTTVCLVQRLLEKIYQTTSATVTVQDGAQAGQTVPHVHFHIMPRR 416          
The following BLAST results are available for this feature:
BLAST of CN192418 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
FHIT_DICDI2.979e-2856.57Bis(5'-adenosyl)-triphosphatase OS=Dictyostelium d... [more]
FHIT_HUMAN1.478e-2755.88Bis(5'-adenosyl)-triphosphatase OS=Homo sapiens GN... [more]
FHIT_BOVIN2.522e-2754.90Bis(5'-adenosyl)-triphosphatase OS=Bos taurus GN=F... [more]
FHIT_MOUSE7.337e-2753.92Bis(5'-adenosyl)-triphosphatase OS=Mus musculus GN... [more]
FHIT_RAT2.135e-2652.94Bis(5'-adenosyl)-triphosphatase OS=Rattus norvegic... [more]
NFT1_CAEEL1.171e-2448.25Nitrilase and fragile histidine triad fusion prote... [more]
APH1_SCHPO5.441e-2251.43Bis(5'-nucleosyl)-tetraphosphatase [asymmetrical] ... [more]
HNT2_YEAST2.286e-2051.11Hit family protein 2 OS=Saccharomyces cerevisiae G... [more]
NFT1_DROME1.695e-1542.55Nitrilase and fragile histidine triad fusion prote... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS06_0006N18_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0006N18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN192418 ID=CN192418; Name=CN192418; organism=Citrus sinensis; type=EST; length=402bp
GAGGTGTTGGTTCATTTCCCATTCATCGAACAGGTCGATCACCTCCTCCA
CTGTTTCTGTCGCCAAAGATGTCATCCATCGAGCAATATGCGTTCGGCCC
TTTTAAGATAGATCCTAGGCAAGTGTTCTATTCAACCCCTCTATCCTACG
CCTTGGTCAACTTGCGCCCTCTGCTTCCTGGTCATGTGCTTGTCTGCCCA
AGGCGTGACGCGGTTCGCTTTGGTGATCTTACTGCTGATGAGACCCGTGA
TTTATGGCTCACGGCCCAGACGGTTGGCACACAGCTCGAAAGCTACCACA
AGGCTTCATCACTAGCATTTGCCATTCAAGATGGACCTCAAGCTGGACAG
ACAGTGCCCCATGTTCACATCCATATTGTCCCACGCAAAGCTGCCAGCTC
TG
back to top