CN192391

Overview
NameCN192391
Unique NameCN192391
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length295
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8110 contig Csv1_Contig8110:442..734. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN192391 vs. ExPASy Swiss-Prot
Match: MTDH_FRAAN (Probable mannitol dehydrogenase OS=Fragaria ananassa GN=CAD PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.610e-22
Identity = 31/42 (73.81%), Postives = 37/42 (88.10%), Query Frame = 3
Query:  111 LVVADEHFVVRIPDGTPLDAAAPLLCAGITVYGPLKFYGLDK 236
            ++VADEHF+VRIPD  PLD AAPLLCAGIT Y PL+++GLDK
Sbjct:  139 IMVADEHFIVRIPDNLPLDGAAPLLCAGITTYSPLRYFGLDK 180          

HSP 2 Score: 51.9878 bits (123), Expect = 3.610e-22
Identity = 20/32 (62.50%), Postives = 25/32 (78.12%), Query Frame = 1
Query:    7 DSCAIDLENYCPKVIMTYADKYHDGTVTYGGY 102
            ++C   LENYCPK I+TY  KY+DG+ TYGGY
Sbjct:  105 ENCTDHLENYCPKQILTYGAKYYDGSTTYGGY 136          
BLAST of CN192391 vs. ExPASy Swiss-Prot
Match: CADH8_ARATH (Cinnamyl alcohol dehydrogenase 8 OS=Arabidopsis thaliana GN=CAD8 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.103e-20
Identity = 30/41 (73.17%), Postives = 36/41 (87.80%), Query Frame = 3
Query:  114 VVADEHFVVRIPDGTPLDAAAPLLCAGITVYGPLKFYGLDK 236
            +V +E FV+RIPD  PLDAAAPLLCAGITVY P+K++GLDK
Sbjct:  138 MVCEEGFVIRIPDNLPLDAAAPLLCAGITVYSPMKYHGLDK 178          

HSP 2 Score: 51.6026 bits (122), Expect = 1.103e-20
Identity = 21/35 (60.00%), Postives = 24/35 (68.57%), Query Frame = 1
Query:    7 DSCAIDLENYCPKVIMTYADKYHDGTVTYGGYF*H 111
            DSC   +ENYCPK I TY   Y+D T+TYGGY  H
Sbjct:  103 DSCTEGMENYCPKSIQTYGFPYYDNTITYGGYSDH 137          
BLAST of CN192391 vs. ExPASy Swiss-Prot
Match: MTDH_MESCR (Probable mannitol dehydrogenase OS=Mesembryanthemum crystallinum GN=ELI3 PE=2 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 5.342e-20
Identity = 28/42 (66.67%), Postives = 33/42 (78.57%), Query Frame = 3
Query:  111 LVVADEHFVVRIPDGTPLDAAAPLLCAGITVYGPLKFYGLDK 236
            ++V +EHF VRIPD   LDA APLLCAG+TVY PLK + LDK
Sbjct:  142 IMVVEEHFAVRIPDNMALDATAPLLCAGVTVYSPLKHFELDK 183          

HSP 2 Score: 54.299 bits (129), Expect = 5.342e-20
Identity = 21/32 (65.62%), Postives = 26/32 (81.25%), Query Frame = 1
Query:    7 DSCAIDLENYCPKVIMTYADKYHDGTVTYGGY 102
            +SC   LENYCPK+I+TY   Y+DGT+TYGGY
Sbjct:  108 ESCENHLENYCPKMILTYGSTYYDGTLTYGGY 139          
BLAST of CN192391 vs. ExPASy Swiss-Prot
Match: GEDH1_OCIBA (Geraniol dehydrogenase 1 OS=Ocimum basilicum GN=GEDH1 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 4.373e-19
Identity = 29/42 (69.05%), Postives = 36/42 (85.71%), Query Frame = 3
Query:  111 LVVADEHFVVRIPDGTPLDAAAPLLCAGITVYGPLKFYGLDK 236
            ++VADEHF++R P+  PLDA APLLCAGIT Y PLK++GLDK
Sbjct:  141 IMVADEHFIIRWPENFPLDAGAPLLCAGITTYSPLKYFGLDK 182          

HSP 2 Score: 45.4394 bits (106), Expect = 4.373e-19
Identity = 19/32 (59.38%), Postives = 22/32 (68.75%), Query Frame = 1
Query:    7 DSCAIDLENYCPKVIMTYADKYHDGTVTYGGY 102
            D C+ DLENYC K I+TY   Y DGT+  GGY
Sbjct:  107 DQCSNDLENYCYKQILTYGAPYLDGTIARGGY 138          
BLAST of CN192391 vs. ExPASy Swiss-Prot
Match: CADH3_ARATH (Cinnamyl alcohol dehydrogenase 3 OS=Arabidopsis thaliana GN=CAD3 PE=1 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 2.916e-17
Identity = 26/42 (61.90%), Postives = 33/42 (78.57%), Query Frame = 3
Query:  111 LVVADEHFVVRIPDGTPLDAAAPLLCAGITVYGPLKFYGLDK 236
            ++V D  FV+ IPDG P D+ APLLCAGITVY P+K+YG+ K
Sbjct:  135 VIVVDHRFVLSIPDGLPSDSGAPLLCAGITVYSPMKYYGMTK 176          

HSP 2 Score: 45.8246 bits (107), Expect = 2.916e-17
Identity = 19/32 (59.38%), Postives = 22/32 (68.75%), Query Frame = 1
Query:    7 DSCAIDLENYCPKVIMTYADKYHDGTVTYGGY 102
            +SC  DLENYCPKV+ TY  +  DGT   GGY
Sbjct:  101 ESCNQDLENYCPKVVFTYNSRSSDGTRNQGGY 132          
BLAST of CN192391 vs. ExPASy Swiss-Prot
Match: CADH7_ARATH (Cinnamyl alcohol dehydrogenase 7 OS=Arabidopsis thaliana GN=CAD7 PE=1 SV=2)

HSP 1 Score: 65.4698 bits (158), Expect = 8.340e-17
Identity = 27/41 (65.85%), Postives = 34/41 (82.93%), Query Frame = 3
Query:  114 VVADEHFVVRIPDGTPLDAAAPLLCAGITVYGPLKFYGLDK 236
            +V  E F++RIPD  PLD AAPLLCAG+TVY P+K++GLDK
Sbjct:  138 MVCAEDFIIRIPDNLPLDGAAPLLCAGVTVYSPMKYHGLDK 178          

HSP 2 Score: 41.9726 bits (97), Expect = 8.340e-17
Identity = 19/35 (54.29%), Postives = 23/35 (65.71%), Query Frame = 1
Query:    7 DSCAIDLENYCPKVIMTYADKYHDGTVTYGGYF*H 111
            DSC    ENYCPK+I+T   K  D T+T+GGY  H
Sbjct:  103 DSCNDGDENYCPKMILTSGAKNFDDTMTHGGYSDH 137          
BLAST of CN192391 vs. ExPASy Swiss-Prot
Match: CADH5_ORYSJ (Putative cinnamyl alcohol dehydrogenase 5 OS=Oryza sativa subsp. japonica GN=CAD5 PE=3 SV=2)

HSP 1 Score: 60.8474 bits (146), Expect = 1.084e-16
Identity = 26/42 (61.90%), Postives = 33/42 (78.57%), Query Frame = 3
Query:  108 TLVVADEHFVVRIPDGTPLDAAAPLLCAGITVYGPLKFYGLD 233
            ++VV  E FVVR P+  PLD  APLLCAGITVY P+K++GL+
Sbjct:  133 SMVVVHERFVVRFPEAMPLDKGAPLLCAGITVYSPMKYHGLN 174          

HSP 2 Score: 46.2098 bits (108), Expect = 1.084e-16
Identity = 21/32 (65.62%), Postives = 22/32 (68.75%), Query Frame = 1
Query:    7 DSCAIDLENYCPKVIMTYADKYHDGTVTYGGY 102
            DSC   LEN+CP VI TY     DGTVTYGGY
Sbjct:  100 DSCNQGLENHCPGVIFTYNSVDKDGTVTYGGY 131          
BLAST of CN192391 vs. ExPASy Swiss-Prot
Match: MTDH_APIGR (Mannitol dehydrogenase OS=Apium graveolens GN=MTD PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.380e-16
Identity = 29/41 (70.73%), Postives = 34/41 (82.93%), Query Frame = 3
Query:  114 VVADEHFVVRIPDGTPLDAAAPLLCAGITVYGPLKFYGLDK 236
            +VADEHF++R P   PLD+ APLLCAGIT Y PLK+YGLDK
Sbjct:  142 MVADEHFILRWPKNLPLDSGAPLLCAGITTYSPLKYYGLDK 182          

HSP 2 Score: 38.1206 bits (87), Expect = 2.380e-16
Identity = 15/32 (46.88%), Postives = 21/32 (65.62%), Query Frame = 1
Query:    7 DSCAIDLENYCPKVIMTYADKYHDGTVTYGGY 102
            +SC  + E++C   I TY   Y DGT+T+GGY
Sbjct:  107 ESCCDNRESHCENTIDTYGSIYFDGTMTHGGY 138          
BLAST of CN192391 vs. ExPASy Swiss-Prot
Match: CADH2_ARATH (Cinnamyl alcohol dehydrogenase 2 OS=Arabidopsis thaliana GN=CAD2 PE=1 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 5.221e-16
Identity = 26/42 (61.90%), Postives = 33/42 (78.57%), Query Frame = 3
Query:  111 LVVADEHFVVRIPDGTPLDAAAPLLCAGITVYGPLKFYGLDK 236
            ++V D  FV+ IPDG P D+ APLLCAGITVY P+K+YG+ K
Sbjct:  136 VIVVDHRFVLSIPDGLPSDSGAPLLCAGITVYSPMKYYGMTK 177          

HSP 2 Score: 41.5874 bits (96), Expect = 5.221e-16
Identity = 19/33 (57.58%), Postives = 22/33 (66.67%), Query Frame = 1
Query:    7 DSCAIDLENYCPKVIMTYADKYHDGTV-TYGGY 102
            +SC  DLENYCPKV+ TY  +  DGT    GGY
Sbjct:  101 ESCNQDLENYCPKVVFTYNSRSSDGTSRNQGGY 133          
BLAST of CN192391 vs. ExPASy Swiss-Prot
Match: MTDH_PETCR (Mannitol dehydrogenase (Fragment) OS=Petroselinum crispum GN=ELI3 PE=2 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 1.150e-15
Identity = 27/41 (65.85%), Postives = 35/41 (85.37%), Query Frame = 3
Query:  114 VVADEHFVVRIPDGTPLDAAAPLLCAGITVYGPLKFYGLDK 236
            +VAD+HFV+R P+  PLD+ APLLCAGIT Y PL+++GLDK
Sbjct:  119 MVADQHFVLRWPENLPLDSGAPLLCAGITTYSPLRYHGLDK 159          

HSP 2 Score: 38.5058 bits (88), Expect = 1.150e-15
Identity = 16/32 (50.00%), Postives = 21/32 (65.62%), Query Frame = 1
Query:    7 DSCAIDLENYCPKVIMTYADKYHDGTVTYGGY 102
            ++C  D EN C K + TYA    DG++TYGGY
Sbjct:   84 ENCDDDSENNCAKQVQTYAFTNVDGSITYGGY 115          
The following BLAST results are available for this feature:
BLAST of CN192391 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
MTDH_FRAAN3.610e-2273.81Probable mannitol dehydrogenase OS=Fragaria ananas... [more]
CADH8_ARATH1.103e-2073.17Cinnamyl alcohol dehydrogenase 8 OS=Arabidopsis th... [more]
MTDH_MESCR5.342e-2066.67Probable mannitol dehydrogenase OS=Mesembryanthemu... [more]
GEDH1_OCIBA4.373e-1969.05Geraniol dehydrogenase 1 OS=Ocimum basilicum GN=GE... [more]
CADH3_ARATH2.916e-1761.90Cinnamyl alcohol dehydrogenase 3 OS=Arabidopsis th... [more]
CADH7_ARATH8.340e-1765.85Cinnamyl alcohol dehydrogenase 7 OS=Arabidopsis th... [more]
CADH5_ORYSJ1.084e-1661.90Putative cinnamyl alcohol dehydrogenase 5 OS=Oryza... [more]
MTDH_APIGR2.380e-1670.73Mannitol dehydrogenase OS=Apium graveolens GN=MTD ... [more]
CADH2_ARATH5.221e-1661.90Cinnamyl alcohol dehydrogenase 2 OS=Arabidopsis th... [more]
MTDH_PETCR1.150e-1565.85Mannitol dehydrogenase (Fragment) OS=Petroselinum ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0006N03_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0006N03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN192391 ID=CN192391; Name=CN192391; organism=Citrus sinensis; type=EST; length=295bp
GAGGGTGATAGCTGCGCCATTGATCTTGAGAACTACTGCCCCAAAGTTAT
AATGACCTATGCCGACAAGTACCATGATGGAACCGTCACATACGGAGGCT
ACTTCTGACATTAGTGGTTGCCGATGAACACTTTGTGGTCCGTATTCCTG
ATGGCACACCACTTGACGCCGCTGCCCCTCTCCTCTGTGCTGGTATCACA
GTCTACGGTCCGTTGAAATTCTATGGACTCGACAAGCCTGGAATGCATGT
GGGTGTTGTCGGCTTGGGCGGTCTAGGCCATGTCCCCGTCAAATT
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