CN192389

Overview
NameCN192389
Unique NameCN192389
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length564
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2225 contig Csv1_Contig2225:319..882. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN192389 vs. ExPASy Swiss-Prot
Match: UBC28_ARATH (Ubiquitin carrier protein E2 28 OS=Arabidopsis thaliana GN=UBC28 PE=2 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 1.630e-55
Identity = 99/110 (90.00%), Postives = 105/110 (95.45%), Query Frame = -2
Query:  234 GPFDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFPPNINSNGSICLDILKEPWSPALTLSKVLLSICSLLTDPNPDDPLVPEIAHKYKSDKAKYESPARSWTQKYALG 563
            GP DSPY+GGVFLVTIHFPPDYPFKPPKVAFRTKVF PN+NSNGSICLDILKE WSPALT+SKVLLSICSLLTDPNPDDPLVPEIAH YK+D+AKYES ARSWTQKYA+G
Sbjct:   39 GPSDSPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNVNSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYESTARSWTQKYAMG 148          
BLAST of CN192389 vs. ExPASy Swiss-Prot
Match: UBC4_SOLLC (Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 3.630e-55
Identity = 99/110 (90.00%), Postives = 105/110 (95.45%), Query Frame = -2
Query:  234 GPFDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFPPNINSNGSICLDILKEPWSPALTLSKVLLSICSLLTDPNPDDPLVPEIAHKYKSDKAKYESPARSWTQKYALG 563
            GP DSPYAGGVFLV+IHFPPDYPFKPPKVAFRTKVF PNINSNGSICLDILKE WSPALT+SKVLLSICSLLTDPNPDDPLVPEIAH YK+D+AKYE+ ARSWTQKYA+G
Sbjct:   39 GPTDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAMG 148          
BLAST of CN192389 vs. ExPASy Swiss-Prot
Match: UBC10_ARATH (Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis thaliana GN=UBC10 PE=1 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 3.630e-55
Identity = 100/110 (90.91%), Postives = 104/110 (94.55%), Query Frame = -2
Query:  234 GPFDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFPPNINSNGSICLDILKEPWSPALTLSKVLLSICSLLTDPNPDDPLVPEIAHKYKSDKAKYESPARSWTQKYALG 563
            GP +SPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVF PNINSNGSICLDILKE WSPALT+SKVLLSICSLLTDPNPDDPLVPEIAH YK+DK KYES ARSWTQKYA+G
Sbjct:   39 GPSESPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKNKYESTARSWTQKYAMG 148          
BLAST of CN192389 vs. ExPASy Swiss-Prot
Match: UBC9_ARATH (SUMO-conjugating enzyme UBC9 OS=Arabidopsis thaliana GN=UBC9 PE=1 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 6.192e-55
Identity = 99/110 (90.00%), Postives = 104/110 (94.55%), Query Frame = -2
Query:  234 GPFDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFPPNINSNGSICLDILKEPWSPALTLSKVLLSICSLLTDPNPDDPLVPEIAHKYKSDKAKYESPARSWTQKYALG 563
            GP DSPY+GGVFLVTIHFPPDYPFKPPKVAFRTKVF PNINSNGSICLDILKE WSPALT+SKVLLSICSLLTDPNPDDPLVPEIAH YK+DK KYES AR+WTQKYA+G
Sbjct:   39 GPSDSPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKNKYESTARTWTQKYAMG 148          
BLAST of CN192389 vs. ExPASy Swiss-Prot
Match: UBC8_ARATH (Ubiquitin-conjugating enzyme E2 8 OS=Arabidopsis thaliana GN=UBC8 PE=1 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 1.802e-54
Identity = 97/110 (88.18%), Postives = 105/110 (95.45%), Query Frame = -2
Query:  234 GPFDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFPPNINSNGSICLDILKEPWSPALTLSKVLLSICSLLTDPNPDDPLVPEIAHKYKSDKAKYESPARSWTQKYALG 563
            GP +SPY+GGVFLVTIHFPPDYPFKPPKVAFRTKVF PNINSNGSICLDILKE WSPALT+SKVLLSICSLLTDPNPDDPLVPEIAH YK+D+AKYE+ AR+WTQKYA+G
Sbjct:   39 GPAESPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEATARNWTQKYAMG 148          
BLAST of CN192389 vs. ExPASy Swiss-Prot
Match: UBC30_ARATH (Ubiquitin carrier protein E2 30 OS=Arabidopsis thaliana GN=UBC30 PE=2 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 6.846e-54
Identity = 97/110 (88.18%), Postives = 104/110 (94.55%), Query Frame = -2
Query:  234 GPFDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFPPNINSNGSICLDILKEPWSPALTLSKVLLSICSLLTDPNPDDPLVPEIAHKYKSDKAKYESPARSWTQKYALG 563
            GP DSP+AGGVFLVTIHFPPDYPFKPPKVAFRTKV+ PNINSNGSICLDILKE WSPALT+SKVLLSICSLLTDPNPDDPLVPEIAH YK+D+ KYES A+SWTQKYA+G
Sbjct:   39 GPADSPFAGGVFLVTIHFPPDYPFKPPKVAFRTKVYHPNINSNGSICLDILKEQWSPALTVSKVLLSICSLLTDPNPDDPLVPEIAHIYKTDRVKYESTAQSWTQKYAMG 148          
BLAST of CN192389 vs. ExPASy Swiss-Prot
Match: UBC11_ARATH (Ubiquitin-conjugating enzyme E2 11 OS=Arabidopsis thaliana GN=UBC11 PE=2 SV=2)

HSP 1 Score: 208.379 bits (529), Expect = 1.992e-53
Identity = 95/110 (86.36%), Postives = 105/110 (95.45%), Query Frame = -2
Query:  234 GPFDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFPPNINSNGSICLDILKEPWSPALTLSKVLLSICSLLTDPNPDDPLVPEIAHKYKSDKAKYESPARSWTQKYALG 563
            GP +SPYAGGVFLV+IHFPPDYPFKPPKV+F+TKV+ PNINSNGSICLDILKE WSPALT+SKVLLSICSLLTDPNPDDPLVPEIAH YK+D++KYES ARSWTQKYA+G
Sbjct:   39 GPPESPYAGGVFLVSIHFPPDYPFKPPKVSFKTKVYHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYESTARSWTQKYAMG 148          
BLAST of CN192389 vs. ExPASy Swiss-Prot
Match: UBC29_ARATH (Ubiquitin carrier protein E2 29 OS=Arabidopsis thaliana GN=UBC29 PE=2 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 4.906e-52
Identity = 94/109 (86.24%), Postives = 101/109 (92.66%), Query Frame = -2
Query:  237 GPFDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFPPNINSNGSICLDILKEPWSPALTLSKVLLSICSLLTDPNPDDPLVPEIAHKYKSDKAKYESPARSWTQKYAL 563
            GP +SPY+GGVFLV IHFPPDYPFKPPKV FRTKVF PNINSNG+ICLDILK+ WSPALT+SKVLLSICSLLTDPNPDDPLVPEIAH YK+DK KYE+ ARSWTQKYAL
Sbjct:   39 GPNESPYSGGVFLVNIHFPPDYPFKPPKVVFRTKVFHPNINSNGNICLDILKDQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHIYKTDKTKYEAMARSWTQKYAL 147          
BLAST of CN192389 vs. ExPASy Swiss-Prot
Match: UBC4_SCHPO (Ubiquitin-conjugating enzyme E2 4 OS=Schizosaccharomyces pombe GN=ubc4 PE=2 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 9.575e-48
Identity = 84/109 (77.06%), Postives = 98/109 (89.91%), Query Frame = -2
Query:  237 GPFDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFPPNINSNGSICLDILKEPWSPALTLSKVLLSICSLLTDPNPDDPLVPEIAHKYKSDKAKYESPARSWTQKYAL 563
            GP DSPYAGGVF ++IHFP DYPFKPPKV F T+++ PNINSNGSICLDIL++ WSPALT+SKVLLSICSLLTDPNPDDPLVPEIAH YK+D+++YE  AR WT+KYA+
Sbjct:   39 GPADSPYAGGVFFLSIHFPTDYPFKPPKVNFTTRIYHPNINSNGSICLDILRDQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHVYKTDRSRYELSAREWTRKYAI 147          
BLAST of CN192389 vs. ExPASy Swiss-Prot
Match: UBC4_YEAST (Ubiquitin-conjugating enzyme E2 4 OS=Saccharomyces cerevisiae GN=UBC4 PE=1 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 1.633e-47
Identity = 84/109 (77.06%), Postives = 98/109 (89.91%), Query Frame = -2
Query:  237 GPFDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFPPNINSNGSICLDILKEPWSPALTLSKVLLSICSLLTDPNPDDPLVPEIAHKYKSDKAKYESPARSWTQKYAL 563
            GP DSPYAGGVF ++IHFP DYPFKPPK++F TK++ PNIN+NG+ICLDILK+ WSPALTLSKVLLSICSLLTD NPDDPLVPEIAH YK+D+ KYE+ AR WT+KYA+
Sbjct:   40 GPADSPYAGGVFFLSIHFPTDYPFKPPKISFTTKIYHPNINANGNICLDILKDQWSPALTLSKVLLSICSLLTDANPDDPLVPEIAHIYKTDRPKYEATAREWTKKYAV 148          
The following BLAST results are available for this feature:
BLAST of CN192389 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 238
Match NameE-valueIdentityDescription
UBC28_ARATH1.630e-5590.00Ubiquitin carrier protein E2 28 OS=Arabidopsis tha... [more]
UBC4_SOLLC3.630e-5590.00Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum ... [more]
UBC10_ARATH3.630e-5590.91Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis ... [more]
UBC9_ARATH6.192e-5590.00SUMO-conjugating enzyme UBC9 OS=Arabidopsis thalia... [more]
UBC8_ARATH1.802e-5488.18Ubiquitin-conjugating enzyme E2 8 OS=Arabidopsis t... [more]
UBC30_ARATH6.846e-5488.18Ubiquitin carrier protein E2 30 OS=Arabidopsis tha... [more]
UBC11_ARATH1.992e-5386.36Ubiquitin-conjugating enzyme E2 11 OS=Arabidopsis ... [more]
UBC29_ARATH4.906e-5286.24Ubiquitin carrier protein E2 29 OS=Arabidopsis tha... [more]
UBC4_SCHPO9.575e-4877.06Ubiquitin-conjugating enzyme E2 4 OS=Schizosacchar... [more]
UBC4_YEAST1.633e-4777.06Ubiquitin-conjugating enzyme E2 4 OS=Saccharomyces... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0006N02_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0006N02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN192389 ID=CN192389; Name=CN192389; organism=Citrus sinensis; type=EST; length=564bp
TTTTTTTTTTTTTTAAACAAGTACTTAAGCCATTAACTACTTTCCATCAA
AGGAGCTTCAAACACAAACTTTCAACATTAACATAAAAACGTCCCGCCCT
TGCAACTCCCAACACCATTCTAAAACACCAACGTCTGCCCTCCCCAAAGC
AGGTTAAAGAAAATAGATAGACAACCCCCCCAACATATTTCAATAAAGGG
GTTCCTTTTTCGGCAATATCCAAACAACCTTCATCCCAGGGCATACTTCT
GGGTCCAGCTCCGGGCCGGGGATTCATATTTGGCCTTGTCGGACTTGTAC
TTGTGGGCAATCTCCGGAACAAGAGGGTCGTCAGGATTTGGATCAGTAAG
CAAGGAGCAGATAGAGAGCAGGACCTTTGAAAGGGTAAGCGCTGGACTCC
ACGGTTCTTTAAGGATATCAAGACAAATGCTCCCATTGCTGTTGATGTTC
GGGGGGAAAACCTTGGTCCTAAAAGCAACCTTTGGGGGCTTGAAAGGATA
ATCAGGAGGAAAATGAATGGTAACTAAAAATACACCTCCTGCATATGGGC
TATCAAAAGGGCCC
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