CN192387

Overview
NameCN192387
Unique NameCN192387
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length619
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig395 contig Csv1_Contig395:142..760. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN192387 vs. ExPASy Swiss-Prot
Match: RL23A_TOBAC (60S ribosomal protein L23a OS=Nicotiana tabacum GN=RPL23A PE=2 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 1.044e-64
Identity = 127/154 (82.47%), Postives = 133/154 (86.36%), Query Frame = -1
Query:  122 MAP-KVDSSKKGDPXXXXXXXXXXXKSGPTFKKKAKKMRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 580
            MAP K D SKK DP           KSG T KKK++K+RT VTFHRPKTLKKDRNPKYPRISAP RNKLD Y ILKYPLTTESAMKKIEDNNTLVFIVDI+ADK+KIKDAVKKMY+IQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct:    1 MAPAKADPSKKSDPKAQAAKVAKAVKSGSTLKKKSQKIRTKVTFHRPKTLKKDRNPKYPRISAPGRNKLDQYGILKYPLTTESAMKKIEDNNTLVFIVDIKADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154          
BLAST of CN192387 vs. ExPASy Swiss-Prot
Match: RL23A_FRIAG (60S ribosomal protein L23A OS=Fritillaria agrestis GN=RPL23A PE=2 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 2.325e-64
Identity = 127/154 (82.47%), Postives = 133/154 (86.36%), Query Frame = -1
Query:  122 MAPKVDSSKKGDPXXXXXXXXXXXKSG-PTFKKKAKKMRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 580
            MAP    +KK D            KSG  T +KKAKK+RTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADK+KIK AVKKMY+IQTKKVNTLIRPDGTKKAYVRLTPDYDALD+ANKIGII
Sbjct:    1 MAPPAKVAKKPDGKAQALKVAKAVKSGVSTLQKKAKKIRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKAAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDIANKIGII 154          
BLAST of CN192387 vs. ExPASy Swiss-Prot
Match: R23A1_ARATH (60S ribosomal protein L23a-1 OS=Arabidopsis thaliana GN=RPL23AA PE=2 SV=2)

HSP 1 Score: 242.276 bits (617), Expect = 1.507e-63
Identity = 125/154 (81.17%), Postives = 132/154 (85.71%), Query Frame = -1
Query:  122 MAP-KVDSSKKGDPXXXXXXXXXXXKSGPTFKKKAKKMRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 580
            M+P KVD++KK DP           KSG  FKKK KK+RT VTFHRPKTL K R  KYP+ISA PRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADK+KIKDAVKKMY+IQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct:    1 MSPAKVDTTKKADPKAKALKAAKAVKSGQAFKKKDKKIRTKVTFHRPKTLTKPRTGKYPKISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154          
BLAST of CN192387 vs. ExPASy Swiss-Prot
Match: RL23A_DAUCA (60S ribosomal protein L23a OS=Daucus carota GN=RPL23A PE=2 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 1.276e-62
Identity = 125/154 (81.17%), Postives = 132/154 (85.71%), Query Frame = -1
Query:  122 MAP-KVDSSKKGDPXXXXXXXXXXXKSGPTFKKKAKKMRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 580
            M+P KVD +KK D            KSG T  KK KK+RTSVTFHRP+TL KDRNPKYPRISA PRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRA+K+KIKDAVKKMY+IQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct:    1 MSPAKVDVTKKSDAKAQALKTAKAVKSGTTKFKKVKKIRTSVTFHRPRTLTKDRNPKYPRISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154          
BLAST of CN192387 vs. ExPASy Swiss-Prot
Match: R23A2_ARATH (60S ribosomal protein L23a-2 OS=Arabidopsis thaliana GN=RPL23AB PE=2 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 1.666e-62
Identity = 124/154 (80.52%), Postives = 130/154 (84.42%), Query Frame = -1
Query:  122 MAP-KVDSSKKGDPXXXXXXXXXXXKSGPTFKKKAKKMRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 580
            M+P KVD +KK DP           KSG   KK AKK+RT VTFHRPKTL   R PKYP+ISA PRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADK+KIKDAVKKMY+IQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct:    1 MSPAKVDVTKKADPKAKALKAAKAVKSGQIVKKPAKKIRTKVTFHRPKTLTVPRKPKYPKISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154          
BLAST of CN192387 vs. ExPASy Swiss-Prot
Match: RL23A_RAT (60S ribosomal protein L23a OS=Rattus norvegicus GN=Rpl23a PE=2 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 8.028e-49
Identity = 95/121 (78.51%), Postives = 105/121 (86.78%), Query Frame = -1
Query:  122 KAKKMRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 484
            K KK+RTS TF RPKTL+  R PKYPR SAP RNKLDHY I+K+PLTTESAMKKIEDNNTLVFIVD++A+K +IK AVKK+Y+I   KVNTLIRPDG KKAYVRL PDYDALDVANKIGII
Sbjct:   36 KKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKIEDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVANKIGII 156          
BLAST of CN192387 vs. ExPASy Swiss-Prot
Match: RL23A_MOUSE (60S ribosomal protein L23a OS=Mus musculus GN=Rpl23a PE=2 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 8.028e-49
Identity = 95/121 (78.51%), Postives = 105/121 (86.78%), Query Frame = -1
Query:  122 KAKKMRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 484
            K KK+RTS TF RPKTL+  R PKYPR SAP RNKLDHY I+K+PLTTESAMKKIEDNNTLVFIVD++A+K +IK AVKK+Y+I   KVNTLIRPDG KKAYVRL PDYDALDVANKIGII
Sbjct:   36 KKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKIEDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVANKIGII 156          
BLAST of CN192387 vs. ExPASy Swiss-Prot
Match: RL23A_HUMAN (60S ribosomal protein L23a OS=Homo sapiens GN=RPL23A PE=1 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 8.028e-49
Identity = 95/121 (78.51%), Postives = 105/121 (86.78%), Query Frame = -1
Query:  122 KAKKMRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 484
            K KK+RTS TF RPKTL+  R PKYPR SAP RNKLDHY I+K+PLTTESAMKKIEDNNTLVFIVD++A+K +IK AVKK+Y+I   KVNTLIRPDG KKAYVRL PDYDALDVANKIGII
Sbjct:   36 KKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKIEDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVANKIGII 156          
BLAST of CN192387 vs. ExPASy Swiss-Prot
Match: RL23A_BOVIN (60S ribosomal protein L23a OS=Bos taurus GN=RPL23A PE=2 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 8.028e-49
Identity = 95/121 (78.51%), Postives = 105/121 (86.78%), Query Frame = -1
Query:  122 KAKKMRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 484
            K KK+RTS TF RPKTL+  R PKYPR SAP RNKLDHY I+K+PLTTESAMKKIEDNNTLVFIVD++A+K +IK AVKK+Y+I   KVNTLIRPDG KKAYVRL PDYDALDVANKIGII
Sbjct:   36 KKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKIEDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVANKIGII 156          
BLAST of CN192387 vs. ExPASy Swiss-Prot
Match: RL25_PUCGR (60S ribosomal protein L25 OS=Puccinia graminis PE=2 SV=2)

HSP 1 Score: 167.548 bits (423), Expect = 4.717e-41
Identity = 81/125 (64.80%), Postives = 100/125 (80.00%), Query Frame = -1
Query:  122 TFKKKAKKMRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 496
            T  K  +++RTSVTF RPKTL+  R PKYPR S P   ++D Y+ L  PL TESAMKKIEDNNTL+FIVD++A+KR+I DAVKK+Y++   +VNTLIRPDG KKA+VRLTP+ DALD+ANKIG I
Sbjct:   34 TSSKTQRRIRTSVTFRRPKTLRLSRKPKYPRTSVPHAPRMDAYRTLVRPLNTESAMKKIEDNNTLLFIVDLKANKRQIADAVKKLYDVTPLRVNTLIRPDGKKKAFVRLTPEVDALDIANKIGFI 158          
The following BLAST results are available for this feature:
BLAST of CN192387 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
RL23A_TOBAC1.044e-6482.4760S ribosomal protein L23a OS=Nicotiana tabacum GN... [more]
RL23A_FRIAG2.325e-6482.4760S ribosomal protein L23A OS=Fritillaria agrestis... [more]
R23A1_ARATH1.507e-6381.1760S ribosomal protein L23a-1 OS=Arabidopsis thalia... [more]
RL23A_DAUCA1.276e-6281.1760S ribosomal protein L23a OS=Daucus carota GN=RPL... [more]
R23A2_ARATH1.666e-6280.5260S ribosomal protein L23a-2 OS=Arabidopsis thalia... [more]
RL23A_RAT8.028e-4978.5160S ribosomal protein L23a OS=Rattus norvegicus GN... [more]
RL23A_MOUSE8.028e-4978.5160S ribosomal protein L23a OS=Mus musculus GN=Rpl2... [more]
RL23A_HUMAN8.028e-4978.5160S ribosomal protein L23a OS=Homo sapiens GN=RPL2... [more]
RL23A_BOVIN8.028e-4978.5160S ribosomal protein L23a OS=Bos taurus GN=RPL23A... [more]
RL25_PUCGR4.717e-4164.8060S ribosomal protein L25 OS=Puccinia graminis PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0006M24_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0006M24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN192387 ID=CN192387; Name=CN192387; organism=Citrus sinensis; type=EST; length=619bp
GAGGGGCATCCAATGCAAAAACTCAATATAAAAGATAGATCTGAGTACAT
ATTTGAAAATAACCAAAACGAAATTGGAGTCCTAACAAAACTGTTGACAA
TACACACGAACTCACTCCTTAGATAATTCCAATCTTGTTGGCCACATCCA
ATGCATCATAATCCGGAGTCAGCCTAACATATGCCTTCTTAGTTCCATCA
GGTCTGATCAAAGTGTTGACTTTCTTGGTCTGAATTTCGTACATTTTCTT
GACGGCATCCTTGATCTTCCTCTTATCAGCACGGATGTCAACAATGAAAA
CCAAGGTATTATTGTCCTCGATCTTCTTCATAGCTGATTCGGTAGTCAAG
GGATACTTGAGAATTTGGTAGTGGTCCAACTTGTTCCTCGGTGGAGCACT
AATGCGGGGATACTTGGGGTTTCTGTCCTTCTTCAGGGTCTTTGGCCTAT
GGAATGTAACTGAGGTCCGCATCTTCTTCGCCTTCTTCTTAAAAGTCGGC
CCTGATTTCACAGCCTTGGCAACCTTAGTAGCCTGGGCCTTTGGATCACC
CTTTTTTGAGCTGTCAACTTTGGGAGCCATTGGATTGGACTTGTCCTACG
AAACACCTCTGAATCTAAC
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