CN192385

Overview
NameCN192385
Unique NameCN192385
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length711
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5300 contig Csv1_Contig5300:298..1009. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN192385 vs. ExPASy Swiss-Prot
Match: CNGC2_ARATH (Cyclic nucleotide-gated ion channel 2 OS=Arabidopsis thaliana GN=CNGC2 PE=1 SV=1)

HSP 1 Score: 283.878 bits (725), Expect = 5.885e-76
Identity = 144/182 (79.12%), Postives = 151/182 (82.97%), Query Frame = 2
Query:    5 LECYACTQVGVPVFHSTSCDQAHQPEWEASAGSSLVPIQARSKILGPKDGR--PASATFAHVFDPRSKRVQRLNRAFLLARGMSLAVDPLFFYALSIGRGGAP-CLYMDGALAAIVTVLRTCVDAVHLFHLWLQFRLAYVSRESLVVGCGKLVWDPRAIASHYVRSLKGFWFDVFVILPVPQ 541
            +ECYACTQVGVP FHSTSCDQAH PEW ASAGSSLVPIQ  S +  P   R       F  V DPRSKRVQR NRA LLARGM+LAVDPLFFYALSIGR   P CLYMDGA AA+VTVLRTC+DAVHL+H+WLQFRLAYVSRESLVVGCGKLVWDPRAIASHY RSL GFWFDV VILPVPQ
Sbjct:   53 VECYACTQVGVPAFHSTSCDQAHAPEWRASAGSSLVPIQEGS-VPNPARTRFRRLKGPFGEVLDPRSKRVQRWNRALLLARGMALAVDPLFFYALSIGRTTGPACLYMDGAFAAVVTVLRTCLDAVHLWHVWLQFRLAYVSRESLVVGCGKLVWDPRAIASHYARSLTGFWFDVIVILPVPQ 233          
BLAST of CN192385 vs. ExPASy Swiss-Prot
Match: CNG18_ARATH (Putative cyclic nucleotide-gated ion channel 18 OS=Arabidopsis thaliana GN=CNGC18 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.273e-19
Identity = 55/133 (41.35%), Postives = 78/133 (58.65%), Query Frame = 2
Query:  149 DGRPASATFAH-VFDPRSKRVQRLNRAFLLARGMSLAVDPLFFYALSIGRGGAPCLYMDGALAAIVTVLRTCVDAVHLFHLWLQFRLAYVSRESLVVGCGKLVWDPRAIASHYVRSLKGFWFDVFVILPVPQV 544
            DG   S  + H + DP S  V   N  FL+   ++L +DP +FY   +G  G  CL +D +LAA VT  RT  D  HL H++++FR A+V+R S V G G+LV D R IA  Y+++   F  DV  +LP+PQ+
Sbjct:   28 DGSQFSVLWRHQILDPDSNIVTYWNHVFLITSILALFLDPFYFYVPYVG--GPACLSIDISLAATVTFFRTVADIFHLLHIFMKFRTAFVARSSRVFGRGELVMDSREIAMRYLKT--DFLIDVAAMLPLPQL 156          
BLAST of CN192385 vs. ExPASy Swiss-Prot
Match: CNGC7_ARATH (Putative cyclic nucleotide-gated ion channel 7 OS=Arabidopsis thaliana GN=CNGC7 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.969e-19
Identity = 53/133 (39.85%), Postives = 80/133 (60.15%), Query Frame = 2
Query:  182 VFDPRSKRVQRLNRAFLLARGMSLAVDPLFFYALSIGRGGAPCLYMDGALAAIVTVLRTCVDAVHLFHLWLQFRLAYVSRESLVVGCGKLVWDPRAIASHYVRSLKGFWFDVFVILPVPQVSSAESLKVHGSE 580
            +FDP+ K +   NR F+++  ++++VDPLFFY   +   G+ C+ +D  LA   T LRT VD  +L  + LQFR AY++  S V G G+LV DP  IA  Y+   + F  D   +LP+PQ++  + L  HGS+
Sbjct:   90 IFDPQDKTLLVWNRLFVISCILAVSVDPLFFYLPIVDNSGSSCIGIDTKLAVTTTTLRTIVDVFYLTRMALQFRTAYIAPSSRVFGRGELVIDPAKIAERYL--TRYFVVDFLAVLPLPQIAVWKFL--HGSK 218          
BLAST of CN192385 vs. ExPASy Swiss-Prot
Match: CNG13_ARATH (Putative cyclic nucleotide-gated ion channel 13 OS=Arabidopsis thaliana GN=CNGC13 PE=2 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 2.969e-19
Identity = 54/133 (40.60%), Postives = 80/133 (60.15%), Query Frame = 2
Query:  146 KDGRPASATFAHVFDPRSKRVQRLNRAFLLARGMSLAVDPLFFYALSIGRGGAPCLYMDGALAAIVTVLRTCVDAVHLFHLWLQFRLAYVSRESLVVGCGKLVWDPRAIASHYVRSLKGFWFDVFVILPVPQV 544
            +D   ++ T  ++ +P+   +Q  N+ FL A  ++LA+DPLFFY + I  G   CL +   L    +VLRT +DA ++ H+  QFR AY+S  S V G G+LV DP+AIA  Y+ S   F  D+  ILP+PQ+
Sbjct:   56 RDSNSSTTTQKNIINPQGSFLQNWNKIFLFASVIALAIDPLFFY-IPIVDGERHCLNLHRNLEIAASVLRTFIDAFYIIHIVFQFRTAYISPSSRVFGRGELVDDPKAIAIKYLSSY--FIIDLLSILPLPQL 185          
BLAST of CN192385 vs. ExPASy Swiss-Prot
Match: CNG14_ARATH (Probable cyclic nucleotide-gated ion channel 14 OS=Arabidopsis thaliana GN=CNGC14 PE=2 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 8.638e-19
Identity = 63/179 (35.20%), Postives = 96/179 (53.63%), Query Frame = 2
Query:   35 VPVFHSTSCDQAHQPEWEASAGSSLVPIQARSKILGPKDGR----PASATFAH--VFDPRSKRVQRLNRAFLLARGMSLAVDPLFFYALSIGR-GGAPCLYMDGALAAIVTVLRTCVDAVHLFHLWLQFRLAYVSRESLVVGCGKLVWDPRAIASHYVRSLKGFWFDVFVILPVPQVSS 550
            VP+F ST+     Q          ++P ++++++  P+ GR    P +       + DP    V + NR FL    ++L VDPLFF+  S+ R G + C+  D  L  ++T  RT  D  ++ H+ ++FR AYVSR S V G G+LV DP+ IA  Y+RS   F  D+   LP+PQ+ S
Sbjct:   26 VPLFKSTTAPFMKQ---------EVLPKKSKTRLKIPRFGRFKVFPENFEIERDKILDPGGDAVLQWNRVFLFWCLVALYVDPLFFFLSSVKRIGRSSCMTTDLKLGIVITFFRTLADLFYVLHIVIKFRTAYVSRTSRVFGRGELVKDPKLIARRYLRS--DFIVDLIACLPLPQIVS 193          
BLAST of CN192385 vs. ExPASy Swiss-Prot
Match: CNGC6_ARATH (Probable cyclic nucleotide-gated ion channel 6 OS=Arabidopsis thaliana GN=CNGC6 PE=1 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 2.513e-18
Identity = 51/121 (42.15%), Postives = 76/121 (62.81%), Query Frame = 2
Query:  182 VFDPRSKRVQRLNRAFLLARGMSLAVDPLFFYALSIGRGGAPCLYMDGALAAIVTVLRTCVDAVHLFHLWLQFRLAYVSRESLVVGCGKLVWDPRAIASHYVRSLKGFWFDVFVILPVPQV 544
            +FDP+ K +   N+ F+ +  ++++VDPLF Y L      A C+ +D  LA IVT +RT +D+ +LFH+ L+FR AYV+  S V G G+LV DP  IA  Y++    F  D+  +LPVPQ+
Sbjct:  103 IFDPQDKFLLLCNKLFVASCILAVSVDPLFLY-LPFINDKAKCVGIDRKLAIIVTTIRTVIDSFYLFHMALRFRTAYVAPSSRVFGRGELVIDPAQIAKRYLQQY--FIIDLLSVLPVPQI 220          
BLAST of CN192385 vs. ExPASy Swiss-Prot
Match: CNG10_ARATH (Probable cyclic nucleotide-gated ion channel 10 OS=Arabidopsis thaliana GN=CNGC10 PE=2 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 3.282e-18
Identity = 52/134 (38.81%), Postives = 78/134 (58.21%), Query Frame = 2
Query:  143 PKDGRPASATFAHVFDPRSKRVQRLNRAFLLARGMSLAVDPLFFYALSIGRGGAPCLYMDGALAAIVTVLRTCVDAVHLFHLWLQFRLAYVSRESLVVGCGKLVWDPRAIASHYVRSLKGFWFDVFVILPVPQV 544
            P     +S T  ++ +P+   +Q  N+ FL A  ++LA+DPLFFY + I      CL +D  L    ++LRT +DA ++ H+  QFR AY++  S V G G+LV D +AIA  Y+ S   F  D+  ILP+PQ+
Sbjct:   55 PDHKETSSVTRKNIINPQDSFLQNWNKIFLFACVVALAIDPLFFY-IPIVDSARHCLTLDSKLEIAASLLRTLIDAFYIIHIVFQFRTAYIAPSSRVFGRGELVDDAKAIALKYLSSY--FIIDLLSILPLPQI 185          
BLAST of CN192385 vs. ExPASy Swiss-Prot
Match: CNG20_ARATH (Probable cyclic nucleotide-gated ion channel 20, chloroplastic OS=Arabidopsis thaliana GN=CNGC20 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.599e-18
Identity = 46/122 (37.70%), Postives = 76/122 (62.30%), Query Frame = 2
Query:  182 VFDPRSKRVQRLNRAFLLARGMSLAVDPLFFYALSIGRGGAPCLYMDGALAAIVTVLRTCVDAVHLFHLWLQFRLAYVSRESLVVGCGKLVWDPRAIASHYVRSLKG-FWFDVFVILPVPQV 544
            + +P +K VQ   + F L+  +++ +DPLFF+ + +      C+ +D  +      +R+  D +   ++ LQFRLAYV+RES VVG G+LV  P+ IA HY   LKG F+ D+F+++P+PQ+
Sbjct:  192 IMNPHAKEVQTWTKFFALSCLLAIFIDPLFFFLIKVQEQNK-CIMIDWPMTKAFVAVRSVTDVIFTMNILLQFRLAYVARESTVVGAGQLVSHPKKIALHY---LKGKFFLDLFIVMPLPQI 309          
BLAST of CN192385 vs. ExPASy Swiss-Prot
Match: CNGC8_ARATH (Putative cyclic nucleotide-gated ion channel 8 OS=Arabidopsis thaliana GN=CNGC8 PE=2 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 9.550e-18
Identity = 53/133 (39.85%), Postives = 79/133 (59.40%), Query Frame = 2
Query:  182 VFDPRSKRVQRLNRAFLLARGMSLAVDPLFFYALSIGRGGAPCLYMDGALAAIVTVLRTCVDAVHLFHLWLQFRLAYVSRESLVVGCGKLVWDPRAIASHYVRSLKGFWFDVFVILPVPQVSSAESLKVHGSE 580
            +FDP+ K +   NR F+++  ++++VDPLFFY L I      C+ +D  LA   T LRT +D  +L  + LQFR AY++  S V G G+LV DP  IA  Y+   + F  D   +LP+PQ++  + L  HGS+
Sbjct:   97 IFDPQDKTLLLWNRMFVISCILAVSVDPLFFY-LPIVDNSKNCIGIDSKLAVTTTTLRTIIDVFYLTRMALQFRTAYIAPSSRVFGRGELVIDPAKIAERYL--TRYFIVDFLAVLPLPQIAVWKFL--HGSK 224          
BLAST of CN192385 vs. ExPASy Swiss-Prot
Match: CNGC9_ARATH (Putative cyclic nucleotide-gated ion channel 9 OS=Arabidopsis thaliana GN=CNGC9 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.629e-17
Identity = 49/121 (40.50%), Postives = 74/121 (61.16%), Query Frame = 2
Query:  182 VFDPRSKRVQRLNRAFLLARGMSLAVDPLFFYALSIGRGGAPCLYMDGALAAIVTVLRTCVDAVHLFHLWLQFRLAYVSRESLVVGCGKLVWDPRAIASHYVRSLKGFWFDVFVILPVPQV 544
            +FDP+ K +   N+ F+ +  ++++VDPLF Y L   +    C+ +D  LA I T LRT +DA +LFH+ L+FR A+V+  S V G G+LV DP  IA  Y++    F  D   +LP+PQ+
Sbjct:  103 IFDPQDKFLLLCNKLFVTSCILAVSVDPLFLY-LPFVKDNEKCIGIDRKLAIIATTLRTVIDAFYLFHMALRFRTAFVAPSSRVFGRGELVIDPAQIAKRYLQQY--FIIDFLSVLPLPQI 220          
The following BLAST results are available for this feature:
BLAST of CN192385 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
CNGC2_ARATH5.885e-7679.12Cyclic nucleotide-gated ion channel 2 OS=Arabidops... [more]
CNG18_ARATH2.273e-1941.35Putative cyclic nucleotide-gated ion channel 18 OS... [more]
CNGC7_ARATH2.969e-1939.85Putative cyclic nucleotide-gated ion channel 7 OS=... [more]
CNG13_ARATH2.969e-1940.60Putative cyclic nucleotide-gated ion channel 13 OS... [more]
CNG14_ARATH8.638e-1935.20Probable cyclic nucleotide-gated ion channel 14 OS... [more]
CNGC6_ARATH2.513e-1842.15Probable cyclic nucleotide-gated ion channel 6 OS=... [more]
CNG10_ARATH3.282e-1838.81Probable cyclic nucleotide-gated ion channel 10 OS... [more]
CNG20_ARATH5.599e-1837.70Probable cyclic nucleotide-gated ion channel 20, c... [more]
CNGC8_ARATH9.550e-1839.85Putative cyclic nucleotide-gated ion channel 8 OS=... [more]
CNGC9_ARATH1.629e-1740.50Putative cyclic nucleotide-gated ion channel 9 OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0006M23_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0006M23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN192385 ID=CN192385; Name=CN192385; organism=Citrus sinensis; type=EST; length=711bp
GAGGCTTGAATGCTATGCATGCACTCAAGTAGGGGTTCCGGTCTTTCACT
CCACCAGCTGCGACCAAGCCCACCAGCCCGAATGGGAGGCCTCTGCCGGG
TCCTCCCTCGTCCCCATTCAGGCCCGTAGTAAGATCCTCGGCCCCAAGGA
CGGCCGTCCTGCCTCAGCCACCTTCGCTCATGTGTTCGATCCTCGCAGCA
AGCGCGTGCAGAGACTCAACCGCGCGTTCCTCCTCGCACGTGGCATGTCT
TTGGCTGTGGACCCTTTGTTCTTCTATGCGCTGTCCATCGGCCGAGGCGG
CGCCCCGTGTTTGTACATGGACGGTGCCTTGGCGGCGATTGTAACCGTTC
TTCGCACGTGCGTTGACGCCGTCCATTTGTTTCACTTGTGGCTTCAGTTC
AGGCTGGCGTACGTCTCGAGGGAGTCGCTTGTTGTCGGATGCGGCAAGCT
CGTGTGGGACCCACGTGCCATCGCTTCTCATTACGTGCGGTCTCTCAAAG
GATTTTGGTTCGACGTTTTCGTAATTCTCCCCGTTCCTCAGGTCAGTTCT
GCTGAAAGTTTAAAGGTTCATGGGTCGGAAAAAATAATTTCTGGAGAAAA
CAGAGGTTTTTCTAAAATTTGTTACATTTCACCCCCTGAGATTCACCTTA
GTTTTATGGTATGACCCTAATATTTCGAAGAAGCTTTTAATTCTTTTAAT
AATTTCTTGAA
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