CN192385
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CN192385 vs. ExPASy Swiss-Prot
Match: CNGC2_ARATH (Cyclic nucleotide-gated ion channel 2 OS=Arabidopsis thaliana GN=CNGC2 PE=1 SV=1) HSP 1 Score: 283.878 bits (725), Expect = 5.885e-76 Identity = 144/182 (79.12%), Postives = 151/182 (82.97%), Query Frame = 2 Query: 5 LECYACTQVGVPVFHSTSCDQAHQPEWEASAGSSLVPIQARSKILGPKDGR--PASATFAHVFDPRSKRVQRLNRAFLLARGMSLAVDPLFFYALSIGRGGAP-CLYMDGALAAIVTVLRTCVDAVHLFHLWLQFRLAYVSRESLVVGCGKLVWDPRAIASHYVRSLKGFWFDVFVILPVPQ 541 +ECYACTQVGVP FHSTSCDQAH PEW ASAGSSLVPIQ S + P R F V DPRSKRVQR NRA LLARGM+LAVDPLFFYALSIGR P CLYMDGA AA+VTVLRTC+DAVHL+H+WLQFRLAYVSRESLVVGCGKLVWDPRAIASHY RSL GFWFDV VILPVPQ Sbjct: 53 VECYACTQVGVPAFHSTSCDQAHAPEWRASAGSSLVPIQEGS-VPNPARTRFRRLKGPFGEVLDPRSKRVQRWNRALLLARGMALAVDPLFFYALSIGRTTGPACLYMDGAFAAVVTVLRTCLDAVHLWHVWLQFRLAYVSRESLVVGCGKLVWDPRAIASHYARSLTGFWFDVIVILPVPQ 233
BLAST of CN192385 vs. ExPASy Swiss-Prot
Match: CNG18_ARATH (Putative cyclic nucleotide-gated ion channel 18 OS=Arabidopsis thaliana GN=CNGC18 PE=2 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 2.273e-19 Identity = 55/133 (41.35%), Postives = 78/133 (58.65%), Query Frame = 2 Query: 149 DGRPASATFAH-VFDPRSKRVQRLNRAFLLARGMSLAVDPLFFYALSIGRGGAPCLYMDGALAAIVTVLRTCVDAVHLFHLWLQFRLAYVSRESLVVGCGKLVWDPRAIASHYVRSLKGFWFDVFVILPVPQV 544 DG S + H + DP S V N FL+ ++L +DP +FY +G G CL +D +LAA VT RT D HL H++++FR A+V+R S V G G+LV D R IA Y+++ F DV +LP+PQ+ Sbjct: 28 DGSQFSVLWRHQILDPDSNIVTYWNHVFLITSILALFLDPFYFYVPYVG--GPACLSIDISLAATVTFFRTVADIFHLLHIFMKFRTAFVARSSRVFGRGELVMDSREIAMRYLKT--DFLIDVAAMLPLPQL 156
BLAST of CN192385 vs. ExPASy Swiss-Prot
Match: CNGC7_ARATH (Putative cyclic nucleotide-gated ion channel 7 OS=Arabidopsis thaliana GN=CNGC7 PE=2 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 2.969e-19 Identity = 53/133 (39.85%), Postives = 80/133 (60.15%), Query Frame = 2 Query: 182 VFDPRSKRVQRLNRAFLLARGMSLAVDPLFFYALSIGRGGAPCLYMDGALAAIVTVLRTCVDAVHLFHLWLQFRLAYVSRESLVVGCGKLVWDPRAIASHYVRSLKGFWFDVFVILPVPQVSSAESLKVHGSE 580 +FDP+ K + NR F+++ ++++VDPLFFY + G+ C+ +D LA T LRT VD +L + LQFR AY++ S V G G+LV DP IA Y+ + F D +LP+PQ++ + L HGS+ Sbjct: 90 IFDPQDKTLLVWNRLFVISCILAVSVDPLFFYLPIVDNSGSSCIGIDTKLAVTTTTLRTIVDVFYLTRMALQFRTAYIAPSSRVFGRGELVIDPAKIAERYL--TRYFVVDFLAVLPLPQIAVWKFL--HGSK 218
BLAST of CN192385 vs. ExPASy Swiss-Prot
Match: CNG13_ARATH (Putative cyclic nucleotide-gated ion channel 13 OS=Arabidopsis thaliana GN=CNGC13 PE=2 SV=2) HSP 1 Score: 95.5153 bits (236), Expect = 2.969e-19 Identity = 54/133 (40.60%), Postives = 80/133 (60.15%), Query Frame = 2 Query: 146 KDGRPASATFAHVFDPRSKRVQRLNRAFLLARGMSLAVDPLFFYALSIGRGGAPCLYMDGALAAIVTVLRTCVDAVHLFHLWLQFRLAYVSRESLVVGCGKLVWDPRAIASHYVRSLKGFWFDVFVILPVPQV 544 +D ++ T ++ +P+ +Q N+ FL A ++LA+DPLFFY + I G CL + L +VLRT +DA ++ H+ QFR AY+S S V G G+LV DP+AIA Y+ S F D+ ILP+PQ+ Sbjct: 56 RDSNSSTTTQKNIINPQGSFLQNWNKIFLFASVIALAIDPLFFY-IPIVDGERHCLNLHRNLEIAASVLRTFIDAFYIIHIVFQFRTAYISPSSRVFGRGELVDDPKAIAIKYLSSY--FIIDLLSILPLPQL 185
BLAST of CN192385 vs. ExPASy Swiss-Prot
Match: CNG14_ARATH (Probable cyclic nucleotide-gated ion channel 14 OS=Arabidopsis thaliana GN=CNGC14 PE=2 SV=2) HSP 1 Score: 93.9745 bits (232), Expect = 8.638e-19 Identity = 63/179 (35.20%), Postives = 96/179 (53.63%), Query Frame = 2 Query: 35 VPVFHSTSCDQAHQPEWEASAGSSLVPIQARSKILGPKDGR----PASATFAH--VFDPRSKRVQRLNRAFLLARGMSLAVDPLFFYALSIGR-GGAPCLYMDGALAAIVTVLRTCVDAVHLFHLWLQFRLAYVSRESLVVGCGKLVWDPRAIASHYVRSLKGFWFDVFVILPVPQVSS 550 VP+F ST+ Q ++P ++++++ P+ GR P + + DP V + NR FL ++L VDPLFF+ S+ R G + C+ D L ++T RT D ++ H+ ++FR AYVSR S V G G+LV DP+ IA Y+RS F D+ LP+PQ+ S Sbjct: 26 VPLFKSTTAPFMKQ---------EVLPKKSKTRLKIPRFGRFKVFPENFEIERDKILDPGGDAVLQWNRVFLFWCLVALYVDPLFFFLSSVKRIGRSSCMTTDLKLGIVITFFRTLADLFYVLHIVIKFRTAYVSRTSRVFGRGELVKDPKLIARRYLRS--DFIVDLIACLPLPQIVS 193
BLAST of CN192385 vs. ExPASy Swiss-Prot
Match: CNGC6_ARATH (Probable cyclic nucleotide-gated ion channel 6 OS=Arabidopsis thaliana GN=CNGC6 PE=1 SV=2) HSP 1 Score: 92.4337 bits (228), Expect = 2.513e-18 Identity = 51/121 (42.15%), Postives = 76/121 (62.81%), Query Frame = 2 Query: 182 VFDPRSKRVQRLNRAFLLARGMSLAVDPLFFYALSIGRGGAPCLYMDGALAAIVTVLRTCVDAVHLFHLWLQFRLAYVSRESLVVGCGKLVWDPRAIASHYVRSLKGFWFDVFVILPVPQV 544 +FDP+ K + N+ F+ + ++++VDPLF Y L A C+ +D LA IVT +RT +D+ +LFH+ L+FR AYV+ S V G G+LV DP IA Y++ F D+ +LPVPQ+ Sbjct: 103 IFDPQDKFLLLCNKLFVASCILAVSVDPLFLY-LPFINDKAKCVGIDRKLAIIVTTIRTVIDSFYLFHMALRFRTAYVAPSSRVFGRGELVIDPAQIAKRYLQQY--FIIDLLSVLPVPQI 220
BLAST of CN192385 vs. ExPASy Swiss-Prot
Match: CNG10_ARATH (Probable cyclic nucleotide-gated ion channel 10 OS=Arabidopsis thaliana GN=CNGC10 PE=2 SV=2) HSP 1 Score: 92.0485 bits (227), Expect = 3.282e-18 Identity = 52/134 (38.81%), Postives = 78/134 (58.21%), Query Frame = 2 Query: 143 PKDGRPASATFAHVFDPRSKRVQRLNRAFLLARGMSLAVDPLFFYALSIGRGGAPCLYMDGALAAIVTVLRTCVDAVHLFHLWLQFRLAYVSRESLVVGCGKLVWDPRAIASHYVRSLKGFWFDVFVILPVPQV 544 P +S T ++ +P+ +Q N+ FL A ++LA+DPLFFY + I CL +D L ++LRT +DA ++ H+ QFR AY++ S V G G+LV D +AIA Y+ S F D+ ILP+PQ+ Sbjct: 55 PDHKETSSVTRKNIINPQDSFLQNWNKIFLFACVVALAIDPLFFY-IPIVDSARHCLTLDSKLEIAASLLRTLIDAFYIIHIVFQFRTAYIAPSSRVFGRGELVDDAKAIALKYLSSY--FIIDLLSILPLPQI 185
BLAST of CN192385 vs. ExPASy Swiss-Prot
Match: CNG20_ARATH (Probable cyclic nucleotide-gated ion channel 20, chloroplastic OS=Arabidopsis thaliana GN=CNGC20 PE=2 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 5.599e-18 Identity = 46/122 (37.70%), Postives = 76/122 (62.30%), Query Frame = 2 Query: 182 VFDPRSKRVQRLNRAFLLARGMSLAVDPLFFYALSIGRGGAPCLYMDGALAAIVTVLRTCVDAVHLFHLWLQFRLAYVSRESLVVGCGKLVWDPRAIASHYVRSLKG-FWFDVFVILPVPQV 544 + +P +K VQ + F L+ +++ +DPLFF+ + + C+ +D + +R+ D + ++ LQFRLAYV+RES VVG G+LV P+ IA HY LKG F+ D+F+++P+PQ+ Sbjct: 192 IMNPHAKEVQTWTKFFALSCLLAIFIDPLFFFLIKVQEQNK-CIMIDWPMTKAFVAVRSVTDVIFTMNILLQFRLAYVARESTVVGAGQLVSHPKKIALHY---LKGKFFLDLFIVMPLPQI 309
BLAST of CN192385 vs. ExPASy Swiss-Prot
Match: CNGC8_ARATH (Putative cyclic nucleotide-gated ion channel 8 OS=Arabidopsis thaliana GN=CNGC8 PE=2 SV=2) HSP 1 Score: 90.5077 bits (223), Expect = 9.550e-18 Identity = 53/133 (39.85%), Postives = 79/133 (59.40%), Query Frame = 2 Query: 182 VFDPRSKRVQRLNRAFLLARGMSLAVDPLFFYALSIGRGGAPCLYMDGALAAIVTVLRTCVDAVHLFHLWLQFRLAYVSRESLVVGCGKLVWDPRAIASHYVRSLKGFWFDVFVILPVPQVSSAESLKVHGSE 580 +FDP+ K + NR F+++ ++++VDPLFFY L I C+ +D LA T LRT +D +L + LQFR AY++ S V G G+LV DP IA Y+ + F D +LP+PQ++ + L HGS+ Sbjct: 97 IFDPQDKTLLLWNRMFVISCILAVSVDPLFFY-LPIVDNSKNCIGIDSKLAVTTTTLRTIIDVFYLTRMALQFRTAYIAPSSRVFGRGELVIDPAKIAERYL--TRYFIVDFLAVLPLPQIAVWKFL--HGSK 224
BLAST of CN192385 vs. ExPASy Swiss-Prot
Match: CNGC9_ARATH (Putative cyclic nucleotide-gated ion channel 9 OS=Arabidopsis thaliana GN=CNGC9 PE=1 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 1.629e-17 Identity = 49/121 (40.50%), Postives = 74/121 (61.16%), Query Frame = 2 Query: 182 VFDPRSKRVQRLNRAFLLARGMSLAVDPLFFYALSIGRGGAPCLYMDGALAAIVTVLRTCVDAVHLFHLWLQFRLAYVSRESLVVGCGKLVWDPRAIASHYVRSLKGFWFDVFVILPVPQV 544 +FDP+ K + N+ F+ + ++++VDPLF Y L + C+ +D LA I T LRT +DA +LFH+ L+FR A+V+ S V G G+LV DP IA Y++ F D +LP+PQ+ Sbjct: 103 IFDPQDKFLLLCNKLFVTSCILAVSVDPLFLY-LPFVKDNEKCIGIDRKLAIIATTLRTVIDAFYLFHMALRFRTAFVAPSSRVFGRGELVIDPAQIAKRYLQQY--FIIDFLSVLPLPQI 220 The following BLAST results are available for this feature:
BLAST of CN192385 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 18
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Sequences
The
following sequences are available for this feature:
EST sequence >CN192385 ID=CN192385; Name=CN192385; organism=Citrus sinensis; type=EST; length=711bpback to top |