CN192374

Overview
NameCN192374
Unique NameCN192374
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length415
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1496 contig Csv1_Contig1496:5..418. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN192374 vs. ExPASy Swiss-Prot
Match: RD19A_ARATH (Cysteine proteinase RD19a OS=Arabidopsis thaliana GN=RD19A PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.160e-20
Identity = 50/83 (60.24%), Postives = 57/83 (68.67%), Query Frame = 2
Query:  110 DDVDQLIRQVTDGGDEILSHHESTNNDLLGAEHHFSLFKKKFNKAYASQEEHDRRFTIFKANLRRAARRQKLDPSATHGVTQF 358
            D  D +IRQV  G +            +L +E HFSLFK+KF K YAS EEHD RF++FKANLRRA R QKLDPSATHGVTQF
Sbjct:   27 DGDDLVIRQVVGGAEP----------QVLTSEDHFSLFKRKFGKVYASNEEHDYRFSVFKANLRRARRHQKLDPSATHGVTQF 99          
BLAST of CN192374 vs. ExPASy Swiss-Prot
Match: CYSP1_MAIZE (Cysteine proteinase 1 OS=Zea mays GN=CCP1 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.160e-18
Identity = 44/85 (51.76%), Postives = 53/85 (62.35%), Query Frame = 2
Query:  107 IDDVDQLIRQVTDGGDEILSHHESTNNDL-LGAEHHFSLFKKKFNKAYASQEEHDRRFTIFKANLRRAARRQKLDPSATHGVTQF 358
            +D  D LIRQV  GGD+         NDL L AE HF  F ++F K+Y   +EH  R ++FK NLRRA R Q LDPSA HGVT+F
Sbjct:   21 VDAEDPLIRQVVPGGDD---------NDLELNAESHFLSFVQRFGKSYKDADEHAYRLSVFKDNLRRARRHQLLDPSAEHGVTKF 96          

HSP 2 Score: 32.7278 bits (73), Expect = 1.160e-18
Identity = 14/14 (100.00%), Postives = 14/14 (100.00%), Query Frame = 3
Query:  363 DLTPAEFRRTYLGL 404
            DLTPAEFRRTYLGL
Sbjct:   98 DLTPAEFRRTYLGL 111          
BLAST of CN192374 vs. ExPASy Swiss-Prot
Match: A494_ARATH (Probable cysteine proteinase A494 OS=Arabidopsis thaliana GN=At2g21430 PE=2 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 4.314e-18
Identity = 47/82 (57.32%), Postives = 53/82 (64.63%), Query Frame = 2
Query:  113 DVDQLIRQVTDGGDEILSHHESTNNDLLGAEHHFSLFKKKFNKAYASQEEHDRRFTIFKANLRRAARRQKLDPSATHGVTQF 358
            D D LIRQV D           T   +L +E HF+LFKKKF K Y S EEH  RF++FKANL RA R QK+DPSA HGVTQF
Sbjct:   25 DEDVLIRQVVD----------ETEPKVLSSEDHFTLFKKKFGKVYGSIEEHYYRFSVFKANLLRAMRHQKMDPSARHGVTQF 96          

HSP 2 Score: 22.7126 bits (47), Expect = 4.314e-18
Identity = 9/14 (64.29%), Postives = 12/14 (85.71%), Query Frame = 3
Query:  363 DLTPAEFRRTYLGL 404
            DLT +EFRR +LG+
Sbjct:   98 DLTRSEFRRKHLGV 111          
BLAST of CN192374 vs. ExPASy Swiss-Prot
Match: CYSP_PEA (Cysteine proteinase 15A OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.871e-16
Identity = 39/80 (48.75%), Postives = 53/80 (66.25%), Query Frame = 2
Query:  119 DQLIRQVTDGGDEILSHHESTNNDLLGAEHHFSLFKKKFNKAYASQEEHDRRFTIFKANLRRAARRQKLDPSATHGVTQF 358
            D +IRQV D  ++           LL AEHHF+ FK KF+K+YA++EEHD RF +FK+NL +A   Q  DP+A HG+T+F
Sbjct:   27 DFIIRQVVDNEED----------HLLNAEHHFTSFKSKFSKSYATKEEHDYRFGVFKSNLIKAKLHQNRDPTAEHGITKF 96          

HSP 2 Score: 25.0238 bits (53), Expect = 2.871e-16
Identity = 10/17 (58.82%), Postives = 14/17 (82.35%), Query Frame = 3
Query:  363 DLTPAEFRRTYLGLWRK 413
            DLT +EFRR +LGL ++
Sbjct:   98 DLTASEFRRQFLGLKKR 114          
The following BLAST results are available for this feature:
BLAST of CN192374 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
RD19A_ARATH5.160e-2060.24Cysteine proteinase RD19a OS=Arabidopsis thaliana ... [more]
CYSP1_MAIZE1.160e-1851.76Cysteine proteinase 1 OS=Zea mays GN=CCP1 PE=2 SV=... [more]
A494_ARATH4.314e-1857.32Probable cysteine proteinase A494 OS=Arabidopsis t... [more]
CYSP_PEA2.871e-1648.75Cysteine proteinase 15A OS=Pisum sativum PE=2 SV=1[more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0006M16_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0006M16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN192374 ID=CN192374; Name=CN192374; organism=Citrus sinensis; type=EST; length=415bp
GAGGCTTCTATTGATATCAGCATTGTCTAAAAACATGGGATCTAAAACAG
TAGTTTTCTTTCTGGTCTCTCTCGTCGTCGTCTCCGCCGTTTCATCAGGG
ACGTTGATCGACGATGTTGATCAGCTGATCAGGCAAGTAACGGACGGCGG
TGACGAGATCCTAAGCCACCACGAGAGCACCAACAACGACCTCTTGGGCG
CAGAGCACCACTTCTCCCTATTCAAGAAGAAGTTCAATAAAGCGTACGCT
TCGCAGGAGGAGCACGACCGTAGGTTCACTATTTTCAAGGCCAACTTGCG
ACGCGCCGCGCGTCGCCAGAAGCTCGACCCGAGCGCCACCCACGGCGTCA
CTCAGTTCTGGGGACTTGACTCCGGCCGAGTTCCGCCGGACGTACCTTGG
CCTCTGGAGGAAGCT
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