CN192372

Overview
NameCN192372
Unique NameCN192372
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length639
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN192372_ssr53 microsatellite CN192372_ssr53:53..64. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig12479 contig Csv1_Contig12479:144..782. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN192372 vs. ExPASy Swiss-Prot
Match: TT12_ARATH (Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.382e-21
Identity = 52/142 (36.62%), Postives = 86/142 (60.56%), Query Frame = 3
Query:  213 ESKKLWIVAAPAIFTRFSSFGINVVSQAFIGHVGATQLAAYSLVFTVLLRFANGILLGMASALETLCGQAFGAKQYHMLGIYLQRSWIVLTICAILLLPLFFFTKPILVALGQEENIAEVAGTISLMLIPVLFAFIISFTCQ 638
            ESK LW ++  +I     ++ ++ V+  F GH+G+ QLA  S+    +   A GI+LGMASA++T+CGQA+GA+QY  +GI  QR+ ++    A+ L  L++++ PIL  +GQ   IA      +  +IP ++AF ++   Q
Sbjct:   51 ESKLLWTLSGASIVVSVLNYMLSFVTVMFTGHLGSLQLAGASIATVGIQGLAYGIMLGMASAVQTVCGQAYGARQYSSMGIICQRAMVLHLAAAVFLTFLYWYSGPILKTMGQSVAIAHEGQIFARGMIPQIYAFALACPMQ 192          
BLAST of CN192372 vs. ExPASy Swiss-Prot
Match: S47A1_XENTR (Multidrug and toxin extrusion protein 1 OS=Xenopus tropicalis GN=slc47a1 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.347e-14
Identity = 42/136 (30.88%), Postives = 73/136 (53.68%), Query Frame = 3
Query:  201 KLWVESKKLWIVAAPAIFTRFSSFGINVVSQAFIGHVGATQLAAYSLVFTVLLRFANGILLGMASALETLCGQAFGAKQYHMLGIYLQRSWIVLTICAILLLPLFFFTKPILVALGQEENIAEVAGTISLMLIPVL 608
            ++W E+++L  +AAPA  ++   F I++VS  F GH+G  +L A SL  T++      +  G+A A +TL  Q FG     ++GI LQR  ++L +       L   T+ IL+   Q+  ++++     L+ +P L
Sbjct:   44 EVWQEAQQLLALAAPAFLSQLMIFLISIVSSIFCGHLGKVELDAVSLAITIINITGVAVGTGLAGACDTLISQTFGGSNLKLVGIILQRGILILLLFCFPCWALLINTESILLLFRQDPEVSKLTQIYVLIFLPAL 179          
BLAST of CN192372 vs. ExPASy Swiss-Prot
Match: S47A2_MOUSE (Multidrug and toxin extrusion protein 2 OS=Mus musculus GN=Slc47a2 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.830e-14
Identity = 42/132 (31.82%), Postives = 71/132 (53.79%), Query Frame = 3
Query:  213 ESKKLWIVAAPAIFTRFSSFGINVVSQAFIGHVGATQLAAYSLVFTVLLRFANGILLGMASALETLCGQAFGAKQYHMLGIYLQRSWIVLTICAILLLPLFFFTKPILVALGQEENIAEVAGTISLMLIPVL 608
            E+  L  +A P    +   F I++VS  F GH+G  +L A +L  +V+      +  G+ASA +TL  Q+FG K    +G+ LQR  ++L +C      +F  T+ +L+ L Q+ ++A +A    ++ IP L
Sbjct:   43 EAAALVALAGPVFLAQLMIFLISIVSSIFCGHLGKVELDAVTLAVSVVNVTGISVGTGLASACDTLMSQSFGGKNLKRVGVILQRGILILLLCCFPCWAIFLNTERLLLLLRQDPDVARLAQVYVMICIPAL 174          
BLAST of CN192372 vs. ExPASy Swiss-Prot
Match: S47A1_DANRE (Multidrug and toxin extrusion protein 1 OS=Danio rerio GN=slc47a1 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 9.863e-13
Identity = 43/132 (32.58%), Postives = 68/132 (51.52%), Query Frame = 3
Query:  213 ESKKLWIVAAPAIFTRFSSFGINVVSQAFIGHVGATQLAAYSLVFTVLLRFANGILLGMASALETLCGQAFGAKQYHMLGIYLQRSWIVLTICAILLLPLFFFTKPILVALGQEENIAEVAGTISLMLIPVL 608
            E  +L  +A P   ++   F I+ VS  F GH+G T+LA  +L   V+      I  G+ASA +TL  Q FG+     +G+ LQR  ++L +       L   T+PIL+A+ Q  N+A ++     + +P L
Sbjct:   52 EIVELLKLAGPVFISQLMIFLISFVSTVFCGHLGKTELAGVALAIAVINVTGISIGSGLASACDTLISQTFGSNNLKRVGVILQRGILILLLACFPCWALLINTEPILLAVRQSPNVASLSQLYVKIFMPAL 183          
BLAST of CN192372 vs. ExPASy Swiss-Prot
Match: S47A2_RABIT (Multidrug and toxin extrusion protein 2 OS=Oryctolagus cuniculus GN=SLC47A2 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.090e-11
Identity = 38/139 (27.34%), Postives = 73/139 (52.52%), Query Frame = 3
Query:  207 WVESKKLWIVAAPAIFTRFSSFGINVVSQAFIGHVGATQLAAYSLVFTVLLRFANGILLGMASALETLCGQAFGAKQYHMLGIYLQRSWIVLTICAILLLPLFFFTKPILVALGQEENIAEVAGTISLMLIPVLFAFII 623
            W E++ L++++ P    +  +F   VV   F GH+G  +LA+ +L    +      +  G++SA +TL  Q+FG+     +G+ LQR  ++L +C +    LF  T+ IL+   Q+  ++ +    +++ IP L A  +
Sbjct:   57 WDEARALFVLSGPLFLFQVLNFLTYVVGTVFCGHLGKVELASVTLGVAFVNVCGVSVGAGLSSACDTLMSQSFGSPNKKHVGVILQRGSLILLLCCLPCWALFLNTQHILLLFRQDPAVSRLTQDYAMIFIPGLPAIFL 195          
BLAST of CN192372 vs. ExPASy Swiss-Prot
Match: YJ2D_SCHPO (Uncharacterized transporter C4B3.13 OS=Schizosaccharomyces pombe GN=SPCC4B3.13 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.860e-11
Identity = 51/150 (34.00%), Postives = 74/150 (49.33%), Query Frame = 3
Query:   84 TTDERKAFFLEVRMAGEIKEKLLGNTEEND-----VDGQVKFRHKLWVESKKLWI-VAAPAIFTRFSSFGINVVSQAFIGHVGATQLAAYSLVFTVLLRFANGILLGMASALETLCGQAFGAKQYHMLGIYLQRSWIVLTICAILLLPLF 515
            TT  RK      R A ++    L  TEEN+     +  Q  F  K W +   L I  A P + T    +G  V +   +GH+G T+LAA SL        A  I  G+ SAL+T+  Q+FG+  Y M+G++LQR   +L I  ++  P+F
Sbjct:   47 TTSLRKPTPRVQRPATDVSYGALEETEENESIASGLSVQEDFNSKAWWKELTLLIKFATPVVLTSLLQYGEVVTTVFSLGHLGKTELAAASLSNMTATITAFAIYQGIVSALDTVGTQSFGSGNYEMVGLHLQR---ILAILLLIQFPIF 193          
BLAST of CN192372 vs. ExPASy Swiss-Prot
Match: S47A2_HUMAN (Multidrug and toxin extrusion protein 2 OS=Homo sapiens GN=SLC47A2 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.144e-11
Identity = 39/139 (28.06%), Postives = 73/139 (52.52%), Query Frame = 3
Query:  192 FRHKLWVESKKLWIVAAPAIFTRFSSFGINVVSQAFIGHVGATQLAAYSLVFTVLLRFANGILLGMASALETLCGQAFGAKQYHMLGIYLQRSWIVLTICAILLLPLFFFTKPILVALGQEENIAEVAGTISLMLIPVL 608
            F  ++W     L+ ++ P    +  +F I +VS  F GH+G  +LA+ +L    +      + +G++SA +TL  Q+FG+     +G+ LQR  +VL +C +    LF  T+ IL+   Q+ +++ +     ++ IP L
Sbjct:   27 FGTEMWT----LFALSGPLFLFQVLTFMIYIVSTVFCGHLGKVELASVTLAVAFVNVCGVSVGVGLSSACDTLMSQSFGSPNKKHVGVILQRGALVLLLCCLPCWALFLNTQHILLLFRQDPDVSRLTQDYVMIFIPGL 161          
BLAST of CN192372 vs. ExPASy Swiss-Prot
Match: S47A2_PONAB (Multidrug and toxin extrusion protein 2 OS=Pongo abelii GN=SLC47A2 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.412e-11
Identity = 39/139 (28.06%), Postives = 72/139 (51.80%), Query Frame = 3
Query:  192 FRHKLWVESKKLWIVAAPAIFTRFSSFGINVVSQAFIGHVGATQLAAYSLVFTVLLRFANGILLGMASALETLCGQAFGAKQYHMLGIYLQRSWIVLTICAILLLPLFFFTKPILVALGQEENIAEVAGTISLMLIPVL 608
            F  ++W     L+ ++ P    +  +F I +VS  F GH+G  +LA+ +L    +      + +G++SA +TL  Q+FG+     +G+ LQR  +VL +C +    LF  T+ IL+   Q+  ++ +     ++ IP L
Sbjct:   27 FGTEMWT----LFALSGPLFLFQVLTFMIYIVSTVFCGHLGKVELASVTLAVAFVNVCGVSVGVGLSSACDTLMSQSFGSPNKKHVGVILQRGALVLLLCCLPCWALFLNTQHILLLFRQDPEVSRLTQDYVMIFIPGL 161          
The following BLAST results are available for this feature:
BLAST of CN192372 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
TT12_ARATH3.382e-2136.62Protein TRANSPARENT TESTA 12 OS=Arabidopsis thalia... [more]
S47A1_XENTR2.347e-1430.88Multidrug and toxin extrusion protein 1 OS=Xenopus... [more]
S47A2_MOUSE6.830e-1431.82Multidrug and toxin extrusion protein 2 OS=Mus mus... [more]
S47A1_DANRE9.863e-1332.58Multidrug and toxin extrusion protein 1 OS=Danio r... [more]
S47A2_RABIT1.090e-1127.34Multidrug and toxin extrusion protein 2 OS=Oryctol... [more]
YJ2D_SCHPO1.860e-1134.00Uncharacterized transporter C4B3.13 OS=Schizosacch... [more]
S47A2_HUMAN4.144e-1128.06Multidrug and toxin extrusion protein 2 OS=Homo sa... [more]
S47A2_PONAB5.412e-1128.06Multidrug and toxin extrusion protein 2 OS=Pongo a... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS06_0006M13_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0006M13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN192372 ID=CN192372; Name=CN192372; organism=Citrus sinensis; type=EST; length=639bp
GAGGTTCTATTTGTTTTTTTTTTTAAATCTTCTTAAAAAATCTGGTGATT
TCAAGAAGAAGAAGCTGCACTTGTTTTATGAATACAACTGATGAAAGAAA
AGCTTTTTTTCTGGAAGTGAGAATGGCAGGAGAGATCAAAGAGAAGCTAT
TAGGAAACACAGAGGAAAATGATGTTGATGGGCAAGTGAAATTCAGGCAC
AAGCTGTGGGTGGAGTCCAAAAAGTTATGGATTGTAGCAGCTCCCGCTAT
TTTCACAAGATTTTCTTCATTTGGGATCAACGTAGTTAGTCAGGCATTTA
TTGGGCACGTTGGCGCGACCCAACTAGCTGCCTACTCACTTGTGTTTACT
GTTCTCTTGAGGTTTGCAAATGGCATCCTGTTGGGCATGGCTAGTGCATT
AGAGACGCTCTGTGGGCAAGCTTTTGGGGCGAAACAATACCACATGCTAG
GAATATATCTTCAAAGATCATGGATAGTCTTAACCATTTGTGCTATCCTT
CTCTTACCTCTGTTCTTCTTCACTAAACCAATTTTGGTGGCTTTGGGCCA
AGAAGAAAATATTGCTGAAGTGGCGGGAACTATTTCTCTCATGCTAATCC
CTGTGTTGTTCGCCTTCATCATATCCTTTACCTGCCAAA
back to top