CN192371

Overview
NameCN192371
Unique NameCN192371
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length645
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN192371 vs. ExPASy Swiss-Prot
Match: APL_ARATH (Myb family transcription factor APL OS=Arabidopsis thaliana GN=APL PE=2 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 2.407e-30
Identity = 66/133 (49.62%), Postives = 94/133 (70.68%), Query Frame = 1
Query:   34 KPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTARYRPDSSEGSSE----KRLTPLEEISSLDLKTGIEITEALRLQMEVQKRLHEQLEIQRNLQLRIEEQGKYLQMMFEK 420
            KPR+RWT ELHE FV+AV QLGG ++ATPK ++++M V+GLT+YH+KSHLQK+R  + +P    G        R + ++   ++   +G+       +QMEVQ+RLHEQLE+QR+LQLRIE QGKY+Q + E+
Sbjct:   34 KPRLRWTVELHERFVDAVAQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGK-QPHKEYGDHSTKEGSRASAMDIQRNVASSSGMMSRNMNEMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILER 165          
BLAST of CN192371 vs. ExPASy Swiss-Prot
Match: MYBF_ARATH (Putative Myb family transcription factor At1g14600 OS=Arabidopsis thaliana GN=At1g14600 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.160e-16
Identity = 43/73 (58.90%), Postives = 53/73 (72.60%), Query Frame = 1
Query:   37 PRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTARY----RPDSSEGSSEKR 243
            PR+RWTPELH +FV AV+ LGG  +ATPK VLK+M V+GLTI HVKSHLQ YR +R     +P+ S   S +R
Sbjct:   24 PRLRWTPELHRSFVHAVDLLGGQYKATPKLVLKIMDVKGLTISHVKSHLQMYRGSRITLLGKPEESSSPSSRR 96          
BLAST of CN192371 vs. ExPASy Swiss-Prot
Match: ARR20_ARATH (Putative two-component response regulator ARR20 OS=Arabidopsis thaliana GN=ARR20 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.280e-11
Identity = 39/79 (49.37%), Postives = 48/79 (60.76%), Query Frame = 1
Query:   34 KPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMK----VEGLTIYHVKSHLQKYRTARYRPDSSEGSSEKRLTPLE 258
            KPRM+WTPELH  F  AV ++G  E+A PK +LK M+    V+GLT  +V SHLQKYR           SS+K  TP E
Sbjct:  211 KPRMQWTPELHHKFEVAVEKMGSLEKAFPKTILKYMQEELNVQGLTRNNVASHLQKYRQ----------SSKKTCTPQE 279          
The following BLAST results are available for this feature:
BLAST of CN192371 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
APL_ARATH2.407e-3049.62Myb family transcription factor APL OS=Arabidopsis... [more]
MYBF_ARATH1.160e-1658.90Putative Myb family transcription factor At1g14600... [more]
ARR20_ARATH7.280e-1149.37Putative two-component response regulator ARR20 OS... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0006M12_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0006M12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN192371 ID=CN192371; Name=CN192371; organism=Citrus sinensis; type=EST; length=645bp
AGAGGCTCTGCCTCAGCAAATAATGCCCCAGCCAAGCCACGAATGCGTTG
GACGCCAGAACTTCATGAGGCCTTTGTGGAGGCTGTAAACCAACTTGGTG
GTAGTGAAAGAGCTACTCCTAAGGGTGTGCTGAAACTCATGAAAGTTGAA
GGCTTGACTATTTACCATGTGAAAAGCCACTTGCAGAAGTATAGGACAGC
TAGGTACAGGCCAGATTCATCAGAAGGGTCCTCTGAGAAAAGATTGACTC
CTCTTGAAGAAATATCTTCTCTCGATTTGAAAACGGGTATTGAGATCACT
GAAGCACTTCGACTACAAATGGAAGTTCAAAAGCGGCTGCACGAACAGCT
TGAGATACAAAGAAATTTGCAGTTGCGAATAGAAGAGCAAGGGAAGTACC
TGCAAATGATGTTTGAGAAGCAAAAGTCTGGCATTGACATGCTGAAGGGA
TCTTCATCAAACCAGGAGAATTCCTCTACTTCCCTAACAAAAAGTGAATT
AGAAGGTACACAGGTGGACCATGACAAGAAAGGACCTGACACAGCTAATG
CCAACTCTACAAACGAGGAAAGTTCACAGCCAAAGGAGCTGGATGGGAAA
CAAAAGGCACCAGAAACAGAAGCTCCGGAGAATGCTGAGCTAAAT
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