CN192368

Overview
NameCN192368
Unique NameCN192368
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length354
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2200 contig Csv1_Contig2200:21..374. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN192368 vs. ExPASy Swiss-Prot
Match: RD21A_ARATH (Cysteine proteinase RD21a OS=Arabidopsis thaliana GN=RD21A PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 3.985e-28
Identity = 58/100 (58.00%), Postives = 79/100 (79.00%), Query Frame = 1
Query:   61 FRSPTMAMFLLFLFTVSSALDMSIVSYDKTHEAKSSTWRTDYEVMAMFQAWLVKHGKA--YNALGEKEKRFEIFKENLRFIDEHNSKNRTYKVGLNRFAD 354
            F  PTMA+  L +  VSSA+DMSI+SYD+ H   ++  R++ EVM++++AWLVKHGKA   N+L EK++RFEIFK+NLRF+DEHN KN +Y++GL RFAD
Sbjct:    3 FLKPTMAILFLAMVAVSSAVDMSIISYDEKHGVSTTGGRSEAEVMSIYEAWLVKHGKAQSQNSLVEKDRRFEIFKDNLRFVDEHNEKNLSYRLGLTRFAD 102          
BLAST of CN192368 vs. ExPASy Swiss-Prot
Match: ACTN_ACTDE (Actinidain OS=Actinidia deliciosa PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.793e-20
Identity = 53/94 (56.38%), Postives = 71/94 (75.53%), Query Frame = 1
Query:   76 MAMFLLFLFTVSSALDMSIVSYDKTHEAKSSTWRTDYEVMAMFQAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNS-KNRTYKVGLNRFAD 354
            ++M LLF  T+   L +S+        AK+ T RT+ EV AM+++WL+K+GK+YN+LGE E+RFEIFKE LRFIDEHN+  NR+YKVGLN+FAD
Sbjct:    8 VSMSLLFFSTL---LILSLA-----FNAKNLTQRTNDEVKAMYESWLIKYGKSYNSLGEWERRFEIFKETLRFIDEHNADTNRSYKVGLNQFAD 93          
BLAST of CN192368 vs. ExPASy Swiss-Prot
Match: ACTN_ACTCH (Actinidain OS=Actinidia chinensis PE=1 SV=4)

HSP 1 Score: 97.8265 bits (242), Expect = 1.793e-20
Identity = 53/94 (56.38%), Postives = 71/94 (75.53%), Query Frame = 1
Query:   76 MAMFLLFLFTVSSALDMSIVSYDKTHEAKSSTWRTDYEVMAMFQAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNS-KNRTYKVGLNRFAD 354
            ++M LLF  T+   L +S+        AK+ T RT+ EV AM+++WL+K+GK+YN+LGE E+RFEIFKE LRFIDEHN+  NR+YKVGLN+FAD
Sbjct:    8 VSMSLLFFSTL---LILSLA-----FNAKNLTQRTNDEVKAMYESWLIKYGKSYNSLGEWERRFEIFKETLRFIDEHNADTNRSYKVGLNQFAD 93          
BLAST of CN192368 vs. ExPASy Swiss-Prot
Match: CPR4_ARATH (Probable cysteine proteinase At4g11320 OS=Arabidopsis thaliana GN=At4g11320 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.285e-18
Identity = 46/104 (44.23%), Postives = 67/104 (64.42%), Query Frame = 1
Query:   61 FRSPTMAMFLLFLFTVS--SALDMSIVSYDKTHEAKSSTWRT----DYEVMAMFQAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSKNRTYKVGLNRFAD 354
            +    M +FLL L   S  +A+DMS+VS +  H   +   R     D E   MF++W+VKHGK Y+++ EKE+R  IF++NLRFI   N++N +Y++GLNRFAD
Sbjct:    3 YAKSAMLIFLLALVIASCATAMDMSVVSSNDNHHVTAGPGRRQGIFDAEATLMFESWMVKHGKVYDSVAEKERRLTIFEDNLRFITNRNAENLSYRLGLNRFAD 106          
BLAST of CN192368 vs. ExPASy Swiss-Prot
Match: CPR3_ARATH (Probable cysteine proteinase At4g11310 OS=Arabidopsis thaliana GN=At4g11310 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.571e-16
Identity = 43/100 (43.00%), Postives = 65/100 (65.00%), Query Frame = 1
Query:   67 SPTMAMFLLFLFTV----SSALDMSIVSYDKTHEAKSSTWRTDYEVMAMFQAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSKNRTYKVGLNRFAD 354
            S   AM +L +  V    ++A+DMS+VSYD  +   S     D E   +F++W+VKHGK Y ++ EKE+R  IF++NLRFI+  N++N +Y++GL  FAD
Sbjct:    3 SAKSAMLILLVAMVIASCATAIDMSVVSYDDNNRLHSVF---DAEASLIFESWMVKHGKVYGSVAEKERRLTIFEDNLRFINNRNAENLSYRLGLTGFAD 99          
BLAST of CN192368 vs. ExPASy Swiss-Prot
Match: CPR1_ARATH (Probable cysteine proteinase At3g19400 OS=Arabidopsis thaliana GN=At3g19400 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.018e-15
Identity = 42/93 (45.16%), Postives = 64/93 (68.82%), Query Frame = 1
Query:   79 AMFLLFLFTVSSALDMSIVSYDKTHEAKSSTWRTDYEVMAMFQAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNS-KNRTYKVGLNRFAD 354
            A+ +L +  +SS+L ++          ++   R + EV  M++ WLV++ K YN LGEKE+RF+IFK+NL+F+DEHNS  +RT++VGL RFAD
Sbjct:   12 ALVILSVLLLSSSLGVA---------TETEIERNETEVRLMYEQWLVENRKNYNGLGEKERRFKIFKDNLKFVDEHNSVPDRTFEVGLTRFAD 95          
BLAST of CN192368 vs. ExPASy Swiss-Prot
Match: CPR2_ARATH (Probable cysteine proteinase At3g43960 OS=Arabidopsis thaliana GN=At3g43960 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.268e-15
Identity = 41/95 (43.16%), Postives = 64/95 (67.37%), Query Frame = 1
Query:   73 TMAMFLLFLFTVSSALDMSIVSYDKTHEAKSSTWRTDYEVMAMFQAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNS-KNRTYKVGLNRFAD 354
            T+A+  L +  +S +L +   +  + +E          EV+ M++ WLV++GK YN LGEKE+RF+IFK+NL+ I+EHNS  NR+Y+ GLN+F+D
Sbjct:    7 TLALLTLSVLLISISLGVVTATESQRNEG---------EVLTMYEQWLVENGKNYNGLGEKERRFKIFKDNLKRIEEHNSDPNRSYERGLNKFSD 92          
BLAST of CN192368 vs. ExPASy Swiss-Prot
Match: ORYA_ORYSJ (Oryzain alpha chain OS=Oryza sativa subsp. japonica GN=Os04g0650000 PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 6.599e-15
Identity = 41/100 (41.00%), Postives = 62/100 (62.00%), Query Frame = 1
Query:   67 SPTMAMFLLFLFTVSSALDMSIVSYDKTHEAKSSTWRTDYEVMAMFQAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSKN----RTYKVGLNRFAD 354
            S  +A   L L    +A DMSIVSY +         R++ E   ++  W  +HGK+YNA+GE+E+R+  F++NLR+IDEHN+       ++++GLNRFAD
Sbjct:    4 SMALAAAALLLLLSLAAADMSIVSYGE---------RSEEEARRLYAEWKAEHGKSYNAVGEEERRYAAFRDNLRYIDEHNAAADAGVHSFRLGLNRFAD 94          
BLAST of CN192368 vs. ExPASy Swiss-Prot
Match: GCP1_ARATH (Germination-specific cysteine protease 1 OS=Arabidopsis thaliana GN=GCP1 PE=2 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 4.277e-14
Identity = 40/99 (40.40%), Postives = 61/99 (61.62%), Query Frame = 1
Query:   76 MAMFLLFLFTVSSALDMSIVSYDKTHEAKSSTWRTDYEVMAMFQAWLVKHGKAYN----ALGEKEKRFEIFKENLRFIDEHN--SKNRTYKVGLNRFAD 354
            +++ LL++    ++ D SI++ D         WRTD EV +++  W  +HGK  N     + +++KRF IFK+NLRFID HN  +KN TYK+GL +F D
Sbjct:    8 LSLLLLYVVVSLASGDESIIN-DHLQLPSDGKWRTDEEVRSIYLQWSAEHGKTNNNNNGIINDQDKRFNIFKDNLRFIDLHNEDNKNATYKLGLTKFTD 105          
BLAST of CN192368 vs. ExPASy Swiss-Prot
Match: PAPA1_CARPA (Papain OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.772e-13
Identity = 40/88 (45.45%), Postives = 57/88 (64.77%), Query Frame = 1
Query:   91 LFLFTVSSALDMSIVSYDKTHEAKSSTWRTDYEVMAMFQAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSKNRTYKVGLNRFAD 354
            LF++   S  D SIV Y +     +ST R    ++ +F++W++KH K Y  + EK  RFEIFK+NL++IDE N KN +Y +GLN FAD
Sbjct:   17 LFVYMGLSFGDFSIVGYSQND--LTSTER----LIQLFESWMLKHNKIYKNIDEKIYRFEIFKDNLKYIDETNKKNNSYWLGLNVFAD 98          
The following BLAST results are available for this feature:
BLAST of CN192368 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
RD21A_ARATH3.985e-2858.00Cysteine proteinase RD21a OS=Arabidopsis thaliana ... [more]
ACTN_ACTDE1.793e-2056.38Actinidain OS=Actinidia deliciosa PE=1 SV=1[more]
ACTN_ACTCH1.793e-2056.38Actinidain OS=Actinidia chinensis PE=1 SV=4[more]
CPR4_ARATH1.285e-1844.23Probable cysteine proteinase At4g11320 OS=Arabidop... [more]
CPR3_ARATH1.571e-1643.00Probable cysteine proteinase At4g11310 OS=Arabidop... [more]
CPR1_ARATH1.018e-1545.16Probable cysteine proteinase At3g19400 OS=Arabidop... [more]
CPR2_ARATH2.268e-1543.16Probable cysteine proteinase At3g43960 OS=Arabidop... [more]
ORYA_ORYSJ6.599e-1541.00Oryzain alpha chain OS=Oryza sativa subsp. japonic... [more]
GCP1_ARATH4.277e-1440.40Germination-specific cysteine protease 1 OS=Arabid... [more]
PAPA1_CARPA2.772e-1345.45Papain OS=Carica papaya PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0006M10_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0006M10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN192368 ID=CN192368; Name=CN192368; organism=Citrus sinensis; type=EST; length=354bp
GAGGGCTTCTTCTCCCAAAAAGAAAAAAAAAAAGTTCCTTTTCTCAAAAG
ATAGGGTTTGTTTAGATCACCAACCATGGCCATGTTTTTACTTTTTCTCT
TCACTGTTTCATCTGCCTTGGACATGTCGATTGTATCTTATGATAAAACC
CATGAGGCAAAATCTAGCACCTGGAGGACCGACTATGAGGTTATGGCTAT
GTTCCAGGCCTGGCTCGTGAAGCATGGCAAGGCTTATAACGCTTTGGGTG
AAAAAGAGAAAAGGTTTGAGATCTTTAAGGAAAATCTTAGGTTTATTGAT
GAACATAACTCAAAGAACCGGACCTACAAGGTTGGGTTGAACCGGTTTGC
TGAT
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