CN192364

Overview
NameCN192364
Unique NameCN192364
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length433
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4218 contig Csv1_Contig4218:344..775. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN192364 vs. ExPASy Swiss-Prot
Match: UBC5_ARATH (Ubiquitin-conjugating enzyme E2 5 OS=Arabidopsis thaliana GN=UBC5 PE=2 SV=2)

HSP 1 Score: 191.815 bits (486), Expect = 9.974e-49
Identity = 84/101 (83.17%), Postives = 98/101 (97.03%), Query Frame = 2
Query:    2 RESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDVINQSWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVK 304
            ++S+YEGGVWKIRVELPDAYPYKSPS+GF+ KIYHPNVDEMSGSVCLDVINQ+WSPMFDL+N+FE+FLPQLLLYPNPSDPLNG+AA+LMM+DR  Y+Q+VK
Sbjct:   40 KDSIYEGGVWKIRVELPDAYPYKSPSVGFITKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFETFLPQLLLYPNPSDPLNGEAAALMMRDRPTYEQRVK 140          
BLAST of CN192364 vs. ExPASy Swiss-Prot
Match: UBC4_ARATH (Ubiquitin-conjugating enzyme E2 4 OS=Arabidopsis thaliana GN=UBC4 PE=2 SV=2)

HSP 1 Score: 190.274 bits (482), Expect = 2.902e-48
Identity = 83/101 (82.18%), Postives = 98/101 (97.03%), Query Frame = 2
Query:    2 RESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDVINQSWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVK 304
            ++SLY+GGVWKIRVELPDAYPYKSPS+GF+ KIYHPNVDE+SGSVCLDVINQ+WSPMFDL+N+FE+FLPQLLLYPNPSDPLNG+AA+LMM+DR  Y+Q+VK
Sbjct:   40 KDSLYQGGVWKIRVELPDAYPYKSPSVGFITKIYHPNVDELSGSVCLDVINQTWSPMFDLVNVFETFLPQLLLYPNPSDPLNGEAAALMMRDRPAYEQRVK 140          
BLAST of CN192364 vs. ExPASy Swiss-Prot
Match: UBC4_WHEAT (Ubiquitin-conjugating enzyme E2-23 kDa OS=Triticum aestivum GN=UBC4 PE=1 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 5.473e-47
Identity = 83/101 (82.18%), Postives = 95/101 (94.06%), Query Frame = 2
Query:    2 RESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDVINQSWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVK 304
            ++S+Y+GGVWK+RVEL +AYPYKSPSIGF NKIYHPNVDEMSGSVCLDVINQ+WSPMFDL+NIFE FLPQLLLYPNPSDPLNG+AASLMM+D+  Y+ KVK
Sbjct:   40 KDSIYQGGVWKVRVELTEAYPYKSPSIGFTNKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNIFEVFLPQLLLYPNPSDPLNGEAASLMMRDKNAYENKVK 140          
BLAST of CN192364 vs. ExPASy Swiss-Prot
Match: UBC6_ARATH (Ubiquitin-conjugating enzyme E2 6 OS=Arabidopsis thaliana GN=UBC6 PE=2 SV=2)

HSP 1 Score: 185.652 bits (470), Expect = 7.148e-47
Identity = 82/100 (82.00%), Postives = 95/100 (95.00%), Query Frame = 2
Query:    5 ESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDVINQSWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVK 304
            +SLY+GGVWKI+VELP+AYPYKSPS+GFVNKIYHPNVDE SG+VCLDVINQ+WSPMFDL+N+FESFLPQLLLYPNPSDP NG+AASL+M+DR  Y+ KVK
Sbjct:   41 DSLYQGGVWKIKVELPEAYPYKSPSVGFVNKIYHPNVDESSGAVCLDVINQTWSPMFDLINVFESFLPQLLLYPNPSDPFNGEAASLLMRDRAAYELKVK 140          
BLAST of CN192364 vs. ExPASy Swiss-Prot
Match: UBE2H_MOUSE (Ubiquitin-conjugating enzyme E2 H OS=Mus musculus GN=Ube2h PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 1.444e-39
Identity = 69/97 (71.13%), Postives = 86/97 (88.66%), Query Frame = 2
Query:   14 YEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDVINQSWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVK 304
            YEGGVWK+RV+LPD YP+KSPSIGF+NKI+HPN+DE SG+VCLDVINQ+W+ ++DL NIFESFLPQLL YPNP DPLNGDAA++ +   ++Y QK+K
Sbjct:   46 YEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQTWTALYDLTNIFESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIK 142          
BLAST of CN192364 vs. ExPASy Swiss-Prot
Match: UBE2H_HUMAN (Ubiquitin-conjugating enzyme E2 H OS=Homo sapiens GN=UBE2H PE=1 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 1.444e-39
Identity = 69/97 (71.13%), Postives = 86/97 (88.66%), Query Frame = 2
Query:   14 YEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDVINQSWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVK 304
            YEGGVWK+RV+LPD YP+KSPSIGF+NKI+HPN+DE SG+VCLDVINQ+W+ ++DL NIFESFLPQLL YPNP DPLNGDAA++ +   ++Y QK+K
Sbjct:   46 YEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQTWTALYDLTNIFESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIK 142          
BLAST of CN192364 vs. ExPASy Swiss-Prot
Match: UBE2H_BOVIN (Ubiquitin-conjugating enzyme E2 H OS=Bos taurus GN=UBE2H PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 1.444e-39
Identity = 69/97 (71.13%), Postives = 86/97 (88.66%), Query Frame = 2
Query:   14 YEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDVINQSWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVK 304
            YEGGVWK+RV+LPD YP+KSPSIGF+NKI+HPN+DE SG+VCLDVINQ+W+ ++DL NIFESFLPQLL YPNP DPLNGDAA++ +   ++Y QK+K
Sbjct:   46 YEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQTWTALYDLTNIFESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIK 142          
BLAST of CN192364 vs. ExPASy Swiss-Prot
Match: UBC8_SCHPO (Ubiquitin-conjugating enzyme E2 8 OS=Schizosaccharomyces pombe GN=ubc8 PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 3.216e-39
Identity = 69/100 (69.00%), Postives = 87/100 (87.00%), Query Frame = 2
Query:    5 ESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDVINQSWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVK 304
            E+ Y GG+WK+ VELP  YP+KSPSIGFVN+I+HPN+DE+SGSVCLDVINQ+WSPMFD++NIFE FLPQLL YPN SDPLNG+AA+L++++   Y  KV+
Sbjct:   41 ETPYSGGIWKVHVELPSEYPWKSPSIGFVNRIFHPNIDELSGSVCLDVINQTWSPMFDMINIFEVFLPQLLRYPNASDPLNGEAAALLLREPNTYYAKVR 140          
BLAST of CN192364 vs. ExPASy Swiss-Prot
Match: UBC8_YEAST (Ubiquitin-conjugating enzyme E2-24 kDa OS=Saccharomyces cerevisiae GN=UBC8 PE=1 SV=2)

HSP 1 Score: 147.902 bits (372), Expect = 1.652e-35
Identity = 63/101 (62.38%), Postives = 84/101 (83.17%), Query Frame = 2
Query:    2 RESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDVINQSWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVK 304
            +++ YE GVW++ VELPD YPYKSPSIGFVNKI+HPN+D  SGS+CLDVIN +WSP++DL+NI E  +P LL  PN SDPLN +AA+L ++D+K Y++K+K
Sbjct:   40 KDTPYENGVWRLHVELPDNYPYKSPSIGFVNKIFHPNIDIASGSICLDVINSTWSPLYDLINIVEWMIPGLLKEPNGSDPLNNEAATLQLRDKKLYEEKIK 140          
BLAST of CN192364 vs. ExPASy Swiss-Prot
Match: UBC2_DICDI (Ubiquitin-conjugating enzyme E2 2 OS=Dictyostelium discoideum GN=ubc2 PE=3 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 6.972e-18
Identity = 37/100 (37.00%), Postives = 69/100 (69.00%), Query Frame = 2
Query:    5 ESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDVINQSWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVK 304
            +S++EG  +K+ ++  + YP  +P++ F++K++HPNV    GS+CLD++   WSP++D+  I  S +  LL  PNP+ P N ++A L  +++++Y++KVK
Sbjct:   45 DSIWEGATFKLSLQFSEEYPNDAPTVKFLSKMFHPNV-YADGSICLDILQNQWSPIYDIAAILTS-IQSLLCDPNPNSPANSESARLFRENKREYNRKVK 142          
The following BLAST results are available for this feature:
BLAST of CN192364 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 152
Match NameE-valueIdentityDescription
UBC5_ARATH9.974e-4983.17Ubiquitin-conjugating enzyme E2 5 OS=Arabidopsis t... [more]
UBC4_ARATH2.902e-4882.18Ubiquitin-conjugating enzyme E2 4 OS=Arabidopsis t... [more]
UBC4_WHEAT5.473e-4782.18Ubiquitin-conjugating enzyme E2-23 kDa OS=Triticum... [more]
UBC6_ARATH7.148e-4782.00Ubiquitin-conjugating enzyme E2 6 OS=Arabidopsis t... [more]
UBE2H_MOUSE1.444e-3971.13Ubiquitin-conjugating enzyme E2 H OS=Mus musculus ... [more]
UBE2H_HUMAN1.444e-3971.13Ubiquitin-conjugating enzyme E2 H OS=Homo sapiens ... [more]
UBE2H_BOVIN1.444e-3971.13Ubiquitin-conjugating enzyme E2 H OS=Bos taurus GN... [more]
UBC8_SCHPO3.216e-3969.00Ubiquitin-conjugating enzyme E2 8 OS=Schizosacchar... [more]
UBC8_YEAST1.652e-3562.38Ubiquitin-conjugating enzyme E2-24 kDa OS=Saccharo... [more]
UBC2_DICDI6.972e-1837.00Ubiquitin-conjugating enzyme E2 2 OS=Dictyostelium... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0006M08_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0006M08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN192364 ID=CN192364; Name=CN192364; organism=Citrus sinensis; type=EST; length=433bp
GAGGGAAAGCCTTTATGAAGGTGGGGTTTGGAAAATTCGTGTTGAGCTTC
CTGATGCTTATCCATACAAGTCTCCTTCCATTGGGTTTGTGAACAAGATA
TACCACCCTAATGTAGATGAAATGTCTGGTTCTGTATGCTTGGATGTTAT
TAACCAATCATGGAGCCCGATGTTTGATCTATTAAACATTTTTGAATCTT
TTCTTCCTCAACTCCTTCTTTATCCCAATCCTTCAGACCCACTTAATGGT
GATGCAGCTTCACTGATGATGAAGGACCGAAAACAGTATGACCAAAAAGT
GAAAGAGTACTGTGAGAGATATTGCCAAGAAAGAGAATATTGTTAACTCC
ACAGCTGATGAGGAGAGTGGCGATGAGGAAATCAGTGAAGAAGAAAGCGA
ATCTAGTGATGATGACATTGCTGGGCATGCAGA
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