CN192358

Overview
NameCN192358
Unique NameCN192358
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length726
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3714 contig Csv1_Contig3714:536..1261. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN192358 vs. ExPASy Swiss-Prot
Match: G3PC_CRAPL (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Craterostigma plantagineum GN=GAPC PE=2 SV=1)

HSP 1 Score: 341.658 bits (875), Expect = 2.465e-93
Identity = 174/242 (71.90%), Postives = 196/242 (80.99%), Query Frame = 1
Query:   10 HH---VVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSADAPMFVVGVNEKTYKPNMNIVSNASCTTNCLAPLAKVVHEEFGILEGLMXXXXXXXXXXXXXDGPSMKDWRGGRGASQNIIPSSTGAAKAVGKVLPDLNGKLTGMAFRVPTPNVSVVDLTCRLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDA 726
            HH   V D+ TL    K + VF  R+P EIPW + G +YVVES+GVFT   KA+AH+KGGAKKV+ISAPS DAPMFVVGVNEKTY P++++VSNASCTTNCLAPLAKV+H+ FGI+EGLM             DGPS KDWRGGR AS NIIPSSTGAAKAVGKVLPDLNGKLTGMAFRVPT +VSVVDLT  LAK ASY+++KAAIK  SEG LKGILGYT+EDVVS+DFVGDSRSSIFDA
Sbjct:   58 HHELKVKDEKTLLFGDKPVAVFGLRNPEEIPWAETGAEYVVESTGVFTEKEKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEKTYTPDIDVVSNASCTTNCLAPLAKVIHDRFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPDLNGKLTGMAFRVPTVDVSVVDLTVTLAKEASYDEIKAAIKEESEGKLKGILGYTEEDVVSSDFVGDSRSSIFDA 299          
BLAST of CN192358 vs. ExPASy Swiss-Prot
Match: G3P_PODAN (Glyceraldehyde-3-phosphate dehydrogenase OS=Podospora anserina GN=GPD PE=3 SV=1)

HSP 1 Score: 337.035 bits (863), Expect = 6.071e-92
Identity = 164/236 (69.49%), Postives = 196/236 (83.05%), Query Frame = 1
Query:   19 VDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSADAPMFVVGVNEKTYKPNMNIVSNASCTTNCLAPLAKVVHEEFGILEGLMXXXXXXXXXXXXXDGPSMKDWRGGRGASQNIIPSSTGAAKAVGKVLPDLNGKLTGMAFRVPTPNVSVVDLTCRLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDA 726
            V  S L +NGK +K +++RDP+ IPW D G +Y+VES+GVFTT  KASAH+KGGAK+V+ISAPSADAPM+V+GVNEKTY     ++SNASCTTNCLAPLAKVV+++FGI+EGLM             DGPS KDWRGGRGA+QNIIPSSTGAAKAVGKV+P+LNGKLTGMAFRVPT NVSVVDLTCRL K ASYE +KAA+K ASEG LKGILGYT++++VS+D  G++ SSIFDA
Sbjct:   61 VSGSDLIVNGKTVKFYTERDPSAIPWKDTGAEYIVESTGVFTTTEKASAHLKGGAKRVIISAPSADAPMYVMGVNEKTYDGKAAVISNASCTTNCLAPLAKVVNDKFGIVEGLMTTVHSYTATQKTVDGPSAKDWRGGRGAAQNIIPSSTGAAKAVGKVIPELNGKLTGMAFRVPTSNVSVVDLTCRLEKPASYETIKAALKEASEGELKGILGYTEDEIVSSDLNGNANSSIFDA 296          
BLAST of CN192358 vs. ExPASy Swiss-Prot
Match: G3PC_GINBI (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Ginkgo biloba PE=2 SV=1)

HSP 1 Score: 335.88 bits (860), Expect = 1.352e-91
Identity = 170/237 (71.73%), Postives = 193/237 (81.43%), Query Frame = 1
Query:   16 VVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSADAPMFVVGVNEKTYKPNMNIVSNASCTTNCLAPLAKVVHEEFGILEGLMXXXXXXXXXXXXXDGPSMKDWRGGRGASQNIIPSSTGAAKAVGKVLPDLNGKLTGMAFRVPTPNVSVVDLTCRLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDA 726
            V D +TL    K + VF  R+P EIPWG+ GV+YVVES+GVFT   KA+AH+KGGAKKVVI+APS DAPMFVVGVNE  YKP++ IVSNASCTTNCLAPLAKV+++ FGI+EGLM             DGPS KDWRGGRGA  NIIPSSTGAAKAVGKVLP LNGKLTGMAFRVPTP+VSVVDLT RL K ASY+++KAAIK  SEG LKGILGYT++DVVS DF+GD+RSSIFDA
Sbjct:   66 VKDSNTLLFGEKAVTVFGCRNPEEIPWGETGVEYVVESTGVFTDKEKAAAHIKGGAKKVVITAPSKDAPMFVVGVNEHEYKPDLAIVSNASCTTNCLAPLAKVINDRFGIVEGLMTTVHSITATQKTVDGPSNKDWRGGRGAGFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTPDVSVVDLTVRLEKPASYDEIKAAIKEESEGKLKGILGYTEDDVVSTDFIGDNRSSIFDA 302          
BLAST of CN192358 vs. ExPASy Swiss-Prot
Match: G3PC_DIACA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Dianthus caryophyllus GN=GAPC PE=3 SV=1)

HSP 1 Score: 335.88 bits (860), Expect = 1.352e-91
Identity = 172/242 (71.07%), Postives = 192/242 (79.34%), Query Frame = 1
Query:   10 HH---VVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSADAPMFVVGVNEKTYKPNMNIVSNASCTTNCLAPLAKVVHEEFGILEGLMXXXXXXXXXXXXXDGPSMKDWRGGRGASQNIIPSSTGAAKAVGKVLPDLNGKLTGMAFRVPTPNVSVVDLTCRLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDA 726
            HH   V D+ TL    K + VF  R+P EIPWG  G DYVVES+GVFT   KA+AH+KGGAKKV+ISAPS DAPMFVVGVNE  YKP ++IVSNASCTTNCLAPLAKV+++ FGI+EGLM             DGPSMKDWRGGR AS NIIPSSTGAAKAVGKVLP LNGKLTGM+FRVPT +VSVVDLT R+ K A+YE VKAAIK  SEG LKGILGYT++DVVS DFVGD+RSSIFDA
Sbjct:   58 HHDIKVKDEKTLLFGEKAVTVFGNRNPEEIPWGGTGADYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEHEYKPELDIVSNASCTTNCLAPLAKVINDRFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPSLNGKLTGMSFRVPTVDVSVVDLTVRIEKPATYEQVKAAIKEESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDA 299          
BLAST of CN192358 vs. ExPASy Swiss-Prot
Match: G3PC_TOBAC (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic (Fragment) OS=Nicotiana tabacum GN=GAPC PE=2 SV=1)

HSP 1 Score: 335.495 bits (859), Expect = 1.766e-91
Identity = 173/242 (71.49%), Postives = 193/242 (79.75%), Query Frame = 1
Query:   10 HH---VVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSADAPMFVVGVNEKTYKPNMNIVSNASCTTNCLAPLAKVVHEEFGILEGLMXXXXXXXXXXXXXDGPSMKDWRGGRGASQNIIPSSTGAAKAVGKVLPDLNGKLTGMAFRVPTPNVSVVDLTCRLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDA 726
            HH   V D+ TL    K ++VF  R+P EIPW + G D+VVES+GVFT   KA+AH+KGGAKKVVISAPS DAPMFVVGVNEK YKP  +IVSNASCTTNCLAPLAKV+++ FGI+EGLM             DGPSMKDWRGGR  S NIIPSSTGAAKAVGKVLP LNGKLTGMAFRVPT +VSVVDLT RL K ASY+D+KAAIK  SEG LKGILG+T++DVVS DFVGDSRSSIFDA
Sbjct:   47 HHELKVKDEKTLLFGEKSVRVFGIRNPEEIPWAEAGADFVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEKEYKPEYDIVSNASCTTNCLAPLAKVINDRFGIVEGLMTTVHSLTATQKTVDGPSMKDWRGGRATSFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVSVVDLTVRLEKEASYDDIKAAIKEESEGKLKGILGFTEDDVVSTDFVGDSRSSIFDA 288          
BLAST of CN192358 vs. ExPASy Swiss-Prot
Match: G3PC_MAIZE (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 1 OS=Zea mays GN=GAPC1 PE=2 SV=2)

HSP 1 Score: 334.339 bits (856), Expect = 3.935e-91
Identity = 169/235 (71.91%), Postives = 189/235 (80.43%), Query Frame = 1
Query:   22 DDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSADAPMFVVGVNEKTYKPNMNIVSNASCTTNCLAPLAKVVHEEFGILEGLMXXXXXXXXXXXXXDGPSMKDWRGGRGASQNIIPSSTGAAKAVGKVLPDLNGKLTGMAFRVPTPNVSVVDLTCRLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDA 726
            D  TL    K + VF  R+P EIPWG+ G +YVVES+GVFT   KA+AH+KGGAKKVVISAPS DAPMFVVGVNE  Y  ++NIVSNASCTTNCLAPLAKV+H+ FGI+EGLM             DGPS KDWRGGR AS NIIPSSTGAAKAVGKVLPDLNGKLTGM+FRVPT +VSVVDLT R+ KGASYED+K AIK ASEG LKGI+GY +ED+VS DF+GDSRSSIFDA
Sbjct:   65 DSKTLLFGDKPVTVFGIRNPEEIPWGEAGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEDKYTSDVNIVSNASCTTNCLAPLAKVIHDNFGIVEGLMTTVHAITATQKTVDGPSAKDWRGGRAASFNIIPSSTGAAKAVGKVLPDLNGKLTGMSFRVPTVDVSVVDLTVRIEKGASYEDIKKAIKAASEGPLKGIMGYVEEDLVSTDFLGDSRSSIFDA 299          
BLAST of CN192358 vs. ExPASy Swiss-Prot
Match: G3PC_PINSY (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Pinus sylvestris GN=GAPC PE=2 SV=1)

HSP 1 Score: 333.183 bits (853), Expect = 8.766e-91
Identity = 171/242 (70.66%), Postives = 193/242 (79.75%), Query Frame = 1
Query:   10 HHVV---DDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSADAPMFVVGVNEKTYKPNMNIVSNASCTTNCLAPLAKVVHEEFGILEGLMXXXXXXXXXXXXXDGPSMKDWRGGRGASQNIIPSSTGAAKAVGKVLPDLNGKLTGMAFRVPTPNVSVVDLTCRLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDA 726
            HH V   D  TL    K + VF  R+P EIPWG+ G +YVVES+GVFT   KASAH+K GAKKVVISAPS DAPMFVVGVNE  YK ++NIVSNASCTTNCLAPLAKV++++FGI+EGLM             DGPS KDWRGGRGA  NIIPSSTGAAKAVGKVLP LNGKLTGMAFRVPTP+VSVVDLT RL K A+Y+++KAAIK  SEG+LKGILGYT++ VVS DF+GDSRSSIFDA
Sbjct:   61 HHEVNVKDSKTLLFGEKSVAVFGCRNPEEIPWGEVGAEYVVESTGVFTDKEKASAHLKAGAKKVVISAPSKDAPMFVVGVNEHQYKSDVNIVSNASCTTNCLAPLAKVINDKFGIVEGLMTTVHSITATQKTVDGPSNKDWRGGRGAGFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTPDVSVVDLTVRLEKSATYDEIKAAIKAESEGNLKGILGYTEDAVVSTDFIGDSRSSIFDA 302          
BLAST of CN192358 vs. ExPASy Swiss-Prot
Match: G3P_USTMA (Glyceraldehyde-3-phosphate dehydrogenase OS=Ustilago maydis GN=GAPD PE=3 SV=2)

HSP 1 Score: 332.798 bits (852), Expect = 1.145e-90
Identity = 165/234 (70.51%), Postives = 188/234 (80.34%), Query Frame = 1
Query:   25 DSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSADAPMFVVGVNEKTYKPNMNIVSNASCTTNCLAPLAKVVHEEFGILEGLMXXXXXXXXXXXXXDGPSMKDWRGGRGASQNIIPSSTGAAKAVGKVLPDLNGKLTGMAFRVPTPNVSVVDLTCRLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDA 726
            D  L +NGK I VF+++DP+ IPWG  G  YVVES+GVFTTI KASAH+KGGAKKVVISAPSADAPM+V GVN   Y P   +VSNASCTTNCLAPLAKV+H++FGI+EGLM             DGPS KDWRGGR A+ NIIPSSTGAAKAVGKV+P LNGKLTGMAFRVPT NVSVVDLT RL KGASY+++KA +K ASE  LKGILGYT++ VVS DF+G+S SSIFDA
Sbjct:   64 DGKLIVNGKSIAVFAEKDPSNIPWGQAGAHYVVESTGVFTTIDKASAHIKGGAKKVVISAPSADAPMYVCGVNLDAYDPKAQVVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHATTATQKTVDGPSAKDWRGGRAAAANIIPSSTGAAKAVGKVIPSLNGKLTGMAFRVPTTNVSVVDLTARLEKGASYDEIKAEVKRASENELKGILGYTEDAVVSQDFIGNSHSSIFDA 297          
BLAST of CN192358 vs. ExPASy Swiss-Prot
Match: G3P_TRISI (Glyceraldehyde-3-phosphate dehydrogenase OS=Trionyx sinensis GN=GAPDH PE=2 SV=1)

HSP 1 Score: 332.413 bits (851), Expect = 1.495e-90
Identity = 163/235 (69.36%), Postives = 192/235 (81.70%), Query Frame = 1
Query:   22 DDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSADAPMFVVGVNEKTYKPNMNIVSNASCTTNCLAPLAKVVHEEFGILEGLMXXXXXXXXXXXXXDGPSMKDWRGGRGASQNIIPSSTGAAKAVGKVLPDLNGKLTGMAFRVPTPNVSVVDLTCRLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDA 726
            ++  L ING+ I +F +RDPA I WGD G +YVVES+GVFTT  KASAH+KGGAK+VVISAPSADAPMFV+GVN + Y  ++ +VSNASCTTNCLAPLAKV+H+ +G++EGLM             DGPS K WR GRGA+QNIIP+STGAAKAVGKV+P+LNGKLTGMAFRVPTPNVSVVDLTCRL K A Y+D+K  +K ASEG LKGILGYT++ VVS+DF GDSRSSIFDA
Sbjct:   61 ENGKLVINGQAITIFQERDPANIKWGDAGAEYVVESTGVFTTTEKASAHLKGGAKRVVISAPSADAPMFVMGVNHEKYDNSLKVVSNASCTTNCLAPLAKVIHDNYGMVEGLMTTVHAITATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVVDLTCRLQKPAKYDDIKKVMKAASEGPLKGILGYTEDQVVSSDFNGDSRSSIFDA 295          
BLAST of CN192358 vs. ExPASy Swiss-Prot
Match: G3P_CRYCU (Glyceraldehyde-3-phosphate dehydrogenase OS=Cryptococcus curvatus GN=GPD PE=3 SV=1)

HSP 1 Score: 332.413 bits (851), Expect = 1.495e-90
Identity = 163/234 (69.66%), Postives = 186/234 (79.49%), Query Frame = 1
Query:   25 DSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSADAPMFVVGVNEKTYKPNMNIVSNASCTTNCLAPLAKVVHEEFGILEGLMXXXXXXXXXXXXXDGPSMKDWRGGRGASQNIIPSSTGAAKAVGKVLPDLNGKLTGMAFRVPTPNVSVVDLTCRLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDA 726
            D  L I GK I VF +RDPA IPWG  G DYVVES+GVFTTI KAS H+KGGAKKV+ISAPSADAPMFV GVN + YKP   ++SNASCTTNCLAPLAKV+H+ FGI+EGLM             DGPS KDWRGGRGA+ NIIPSSTGAAKAVGKV+P LNGKLTGM+FR+PT +VSVVDL  RL KGASY+ +K  IK ASEG LKGILGYT+++VVS DF+G + SS+FDA
Sbjct:   63 DGKLVIEGKPISVFGERDPAAIPWGKAGADYVVESTGVFTTIEKASLHLKGGAKKVIISAPSADAPMFVCGVNLEAYKPEYEVISNASCTTNCLAPLAKVIHDNFGIVEGLMTTVHATTATQKTVDGPSHKDWRGGRGAAANIIPSSTGAAKAVGKVIPSLNGKLTGMSFRIPTSDVSVVDLVVRLEKGASYDQIKEVIKKASEGELKGILGYTEDEVVSTDFLGSTESSVFDA 296          
The following BLAST results are available for this feature:
BLAST of CN192358 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 349
Match NameE-valueIdentityDescription
G3PC_CRAPL2.465e-9371.90Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_PODAN6.071e-9269.49Glyceraldehyde-3-phosphate dehydrogenase OS=Podosp... [more]
G3PC_GINBI1.352e-9171.73Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_DIACA1.352e-9171.07Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_TOBAC1.766e-9171.49Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_MAIZE3.935e-9171.91Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_PINSY8.766e-9170.66Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_USTMA1.145e-9070.51Glyceraldehyde-3-phosphate dehydrogenase OS=Ustila... [more]
G3P_TRISI1.495e-9069.36Glyceraldehyde-3-phosphate dehydrogenase OS=Triony... [more]
G3P_CRYCU1.495e-9069.66Glyceraldehyde-3-phosphate dehydrogenase OS=Crypto... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0006M05_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0006M05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN192358 ID=CN192358; Name=CN192358; organism=Citrus sinensis; type=EST; length=726bp
TTTAGGGACCATCATGTCGTGGATGACTCCACCTTAGAAATTAATGGGAA
GCTGATTAAAGTTTTCAGCAAAAGGGACCCGGCAGAGATCCCTTGGGGTG
ACTATGGGGTTGATTATGTTGTTGAATCTTCTGGAGTCTTTACAACAATT
GCGAAGGCTTCAGCTCACATGAAGGGTGGTGCAAAAAAGGTGGTAATATC
AGCTCCATCAGCTGATGCACCAATGTTTGTGGTAGGAGTGAATGAAAAGA
CATACAAGCCAAACATGAACATTGTTTCTAATGCAAGTTGTACTACCAAT
TGTCTTGCTCCTCTTGCTAAGGTGGTTCATGAGGAGTTTGGAATTCTTGA
AGGCTTAATGACCACTGTTCATGCAACTACAGCTACACAAAAGACTGTAG
ATGGTCCTTCGATGAAGGATTGGAGAGGAGGGCGTGGAGCTTCACAAAAT
ATCATTCCTAGTTCAACTGGTGCTGCCAAGGCTGTTGGTAAAGTTCTTCC
AGATCTCAACGGAAAGCTTACTGGCATGGCCTTCCGTGTCCCAACTCCTA
ATGTGTCTGTTGTGGACTTGACTTGTCGACTTGCAAAGGGTGCTTCCTAT
GAAGATGTCAAAGCCGCCATAAAGTATGCATCGGAGGGTTCACTGAAAGG
CATTCTTGGATACACAGATGAAGATGTTGTCTCTAATGACTTTGTTGGAG
ACTCGAGGTCAAGTATATTTGATGCG
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