CX302225

Overview
NameCX302225
Unique NameCX302225
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length314
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX302225 vs. ExPASy Swiss-Prot
Match: NFS1_DICDI (Probable cysteine desulfurase, mitochondrial OS=Dictyostelium discoideum GN=nfs1 PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.880e-22
Identity = 45/61 (73.77%), Postives = 58/61 (95.08%), Query Frame = 3
Query:   15 GTRDEMAHSSIRFGIGRFTTEKEVDFAIELLEKHVKRLREMSPLWEMVQEGIDLKTIQWTQ 197
            G  ++MAHSSIRFGIGRFTTE+E+D+ IE+L+K+V+RLR+MSPLWEMVQEGID+KTI+W+Q
Sbjct:  389 GVEEDMAHSSIRFGIGRFTTEQEIDYTIEILKKNVQRLRDMSPLWEMVQEGIDIKTIEWSQ 449          
BLAST of CX302225 vs. ExPASy Swiss-Prot
Match: NFS1_HUMAN (Cysteine desulfurase, mitochondrial OS=Homo sapiens GN=NFS1 PE=1 SV=3)

HSP 1 Score: 102.449 bits (254), Expect = 7.145e-22
Identity = 46/61 (75.41%), Postives = 56/61 (91.80%), Query Frame = 3
Query:   15 GTRDEMAHSSIRFGIGRFTTEKEVDFAIELLEKHVKRLREMSPLWEMVQEGIDLKTIQWTQ 197
            GT +++AHSSIRFGIGRFTTE+EVD+ +E   +HVKRLREMSPLWEMVQ+GIDLK+I+WTQ
Sbjct:  396 GTDEDLAHSSIRFGIGRFTTEEEVDYTVEKCIQHVKRLREMSPLWEMVQDGIDLKSIKWTQ 456          
BLAST of CX302225 vs. ExPASy Swiss-Prot
Match: NFS1_PONAB (Cysteine desulfurase, mitochondrial OS=Pongo abelii GN=NFS1 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.332e-22
Identity = 45/61 (73.77%), Postives = 56/61 (91.80%), Query Frame = 3
Query:   15 GTRDEMAHSSIRFGIGRFTTEKEVDFAIELLEKHVKRLREMSPLWEMVQEGIDLKTIQWTQ 197
            GT +++AHSSIRFG+GRFTTE+EVD+ +E   +HVKRLREMSPLWEMVQ+GIDLK+I+WTQ
Sbjct:  396 GTDEDLAHSSIRFGVGRFTTEEEVDYTVEKCIQHVKRLREMSPLWEMVQDGIDLKSIKWTQ 456          
BLAST of CX302225 vs. ExPASy Swiss-Prot
Match: NFS1_RAT (Cysteine desulfurase, mitochondrial OS=Rattus norvegicus GN=Nfs1 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.715e-21
Identity = 45/61 (73.77%), Postives = 55/61 (90.16%), Query Frame = 3
Query:   15 GTRDEMAHSSIRFGIGRFTTEKEVDFAIELLEKHVKRLREMSPLWEMVQEGIDLKTIQWTQ 197
            GT +++AHSSIRFGIGRFTTE+EVD+ ++    HVKRLREMSPLWEMVQ+GIDLK+I+WTQ
Sbjct:  390 GTDEDLAHSSIRFGIGRFTTEEEVDYTVQKCIHHVKRLREMSPLWEMVQDGIDLKSIKWTQ 450          
BLAST of CX302225 vs. ExPASy Swiss-Prot
Match: NFS1_MOUSE (Cysteine desulfurase, mitochondrial OS=Mus musculus GN=Nfs1 PE=2 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 3.546e-21
Identity = 46/61 (75.41%), Postives = 54/61 (88.52%), Query Frame = 3
Query:   15 GTRDEMAHSSIRFGIGRFTTEKEVDFAIELLEKHVKRLREMSPLWEMVQEGIDLKTIQWTQ 197
            GT +++AHSSIRFGIGRFTTE+EVD+  E    HVKRLREMSPLWEMVQ+GIDLK+I+WTQ
Sbjct:  390 GTDEDLAHSSIRFGIGRFTTEEEVDYTAEKCIHHVKRLREMSPLWEMVQDGIDLKSIKWTQ 450          
BLAST of CX302225 vs. ExPASy Swiss-Prot
Match: NFS1_DROME (Probable cysteine desulfurase, mitochondrial OS=Drosophila melanogaster GN=CG12264 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.632e-21
Identity = 46/61 (75.41%), Postives = 54/61 (88.52%), Query Frame = 3
Query:   15 GTRDEMAHSSIRFGIGRFTTEKEVDFAIELLEKHVKRLREMSPLWEMVQEGIDLKTIQWTQ 197
            GT +++AHSSIRFGIGRFTT +EVD+  +   KHV+RLREMSPLWEMVQEGIDLKTIQW+Q
Sbjct:  401 GTDEDLAHSSIRFGIGRFTTVEEVDYTADKCIKHVERLREMSPLWEMVQEGIDLKTIQWSQ 461          
BLAST of CX302225 vs. ExPASy Swiss-Prot
Match: ISCS_PHOLL (Cysteine desulfurase OS=Photorhabdus luminescens subsp. laumondii GN=iscS PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.261e-18
Identity = 38/60 (63.33%), Postives = 52/60 (86.67%), Query Frame = 3
Query:   15 GTRDEMAHSSIRFGIGRFTTEKEVDFAIELLEKHVKRLREMSPLWEMVQEGIDLKTIQWT 194
            G  DE+AHSSIRF +GRFTTE+E+D+AIEL+ K + RLRE+SPLWEM ++G+DL +I+W+
Sbjct:  343 GMNDELAHSSIRFSLGRFTTEEEIDYAIELIHKSIGRLRELSPLWEMFRQGVDLNSIEWS 402          
BLAST of CX302225 vs. ExPASy Swiss-Prot
Match: NFS1_SCHPO (Probable cysteine desulfurase, mitochondrial OS=Schizosaccharomyces pombe GN=SPBC21D10.11c PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.647e-18
Identity = 41/61 (67.21%), Postives = 50/61 (81.97%), Query Frame = 3
Query:   15 GTRDEMAHSSIRFGIGRFTTEKEVDFAIELLEKHVKRLREMSPLWEMVQEGIDLKTIQWTQ 197
            G  DE AHSSIRFGIGRFTTE E+D+AIE + + V  LR MSPLW++VQEG+DL TI+W+Q
Sbjct:  437 GQSDENAHSSIRFGIGRFTTEAEIDYAIENVSRQVSFLRNMSPLWDLVQEGVDLSTIEWSQ 497          
BLAST of CX302225 vs. ExPASy Swiss-Prot
Match: NFS1_ARATH (Cysteine desulfurase 1, mitochondrial OS=Arabidopsis thaliana GN=NIFS PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.647e-18
Identity = 41/61 (67.21%), Postives = 54/61 (88.52%), Query Frame = 3
Query:   15 GTRDEMAHSSIRFGIGRFTTEKEVDFAIELLEKHVKRLREMSPLWEMVQEGIDLKTIQWTQ 197
            G  ++MAH+SIRFGIGRFTT++E+D A+EL  K V++LREMSPL+EMV+EGID+K IQW+Q
Sbjct:  392 GVDEDMAHTSIRFGIGRFTTKEEIDKAVELTVKQVEKLREMSPLYEMVKEGIDIKNIQWSQ 452          
BLAST of CX302225 vs. ExPASy Swiss-Prot
Match: ISCS_RICFE (Cysteine desulfurase OS=Rickettsia felis GN=iscS PE=3 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 1.647e-18
Identity = 40/59 (67.80%), Postives = 52/59 (88.14%), Query Frame = 3
Query:   15 GTRDEMAHSSIRFGIGRFTTEKEVDFAIELLEKHVKRLREMSPLWEMVQEGIDLKTIQW 191
            G  +E+AH+SIRFGIGRFTTE+EVD+A++L+   + +LRE+SPLWEMVQEGIDLK I+W
Sbjct:  349 GIGEELAHTSIRFGIGRFTTEQEVDYAVDLICSKIDKLRELSPLWEMVQEGIDLKKIKW 407          
The following BLAST results are available for this feature:
BLAST of CX302225 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 165
Match NameE-valueIdentityDescription
NFS1_DICDI1.880e-2273.77Probable cysteine desulfurase, mitochondrial OS=Di... [more]
NFS1_HUMAN7.145e-2275.41Cysteine desulfurase, mitochondrial OS=Homo sapien... [more]
NFS1_PONAB9.332e-2273.77Cysteine desulfurase, mitochondrial OS=Pongo abeli... [more]
NFS1_RAT2.715e-2173.77Cysteine desulfurase, mitochondrial OS=Rattus norv... [more]
NFS1_MOUSE3.546e-2175.41Cysteine desulfurase, mitochondrial OS=Mus musculu... [more]
NFS1_DROME4.632e-2175.41Probable cysteine desulfurase, mitochondrial OS=Dr... [more]
ISCS_PHOLL1.261e-1863.33Cysteine desulfurase OS=Photorhabdus luminescens s... [more]
NFS1_SCHPO1.647e-1867.21Probable cysteine desulfurase, mitochondrial OS=Sc... [more]
NFS1_ARATH1.647e-1867.21Cysteine desulfurase 1, mitochondrial OS=Arabidops... [more]
ISCS_RICFE1.647e-1867.80Cysteine desulfurase OS=Rickettsia felis GN=iscS P... [more]

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Properties
Property NameValue
Genbank descriptionC08018E02SK PhyRootSw1 Citrus sinensis cDNA clone C08018E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX302225 ID=CX302225; Name=CX302225; organism=Citrus sinensis; type=EST; length=314bp
CTCGTGCCGAATTCGGCACGAGGGACGAGATGGCGCACTCTTCTATCCGC
TTCGGGATTGGTCGATTCACGACAGAGAAGGAGGTGGACTTCGCGATCGA
GTTGTTGGAGAAACATGTGAAAAGGTTGAGAGAGATGTCGCCGCTGTGGG
AAATGGTTCAGGAAGGAATCGATCTCAAGACGATTCAATGGACACAGGAT
GCGTCTCACCATTAGTCGAGTAGATCCCTCTAGACGTTGTTGTACATAAC
CGATAAGCCACCGATAATCCAATTAACAATAAACCTTCCAAAAAAAAAAA
AAAAAAAAAAAAAA
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