CN192333

Overview
NameCN192333
Unique NameCN192333
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length707
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig799 contig Csv1_Contig799:27..733. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN192333 vs. ExPASy Swiss-Prot
Match: THOC1_MOUSE (THO complex subunit 1 OS=Mus musculus GN=Thoc1 PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.155e-23
Identity = 67/197 (34.01%), Postives = 96/197 (48.73%), Query Frame = 2 
Query:    5 LQLKDPSFRRHVLVQCLILFDYLKAPGK--NDKDLPXXXXXXXXXXXXXRVKKLLETTPPKGKDFLHSIEHILEREKNWVWWKRDGCPPFEKQS---------MEKKAVQD-----GPKKRRPRWRLGNKELSQLWKWADQNPNALTDPQRVRTPAITEYWKPLADDMDPSAGIEAEYHHKNSRVYCWKGLRFSARQ 547
            LQL D +FRRH+L+Q LILF YLK   K  +   +               V +LL   PP G+ F   +EHIL  E+NW  WK +GCP F K+          + K+A  +     GP K   +  +GN+EL++LW     N  A     R   P + E+++   +  DP   +E+EY   N+  Y W+ LR  AR+
Sbjct:  310 LQLSDSNFRRHILLQYLILFQYLKGQVKFKSSNYVLTDEQSLWIEDTTKSVYQLLSENPPDGERFSKMVEHILNTEENWNSWKNEGCPSFVKERASDTKPTRVVRKRAAPEDFLGKGPNK---KILIGNEELTRLWNLCPDNMEACKSETREYMPTLEEFFEEAIEQADPENMVESEYKAVNNSNYGWRALRLLARR 503
[Close]
BLAST of CN192333 vs. ExPASy Swiss-Prot
Match: THOC1_HUMAN (THO complex subunit 1 OS=Homo sapiens GN=THOC1 PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.361e-23
Identity = 67/197 (34.01%), Postives = 95/197 (48.22%), Query Frame = 2 
Query:    5 LQLKDPSFRRHVLVQCLILFDYLKAPGK--NDKDLPXXXXXXXXXXXXXRVKKLLETTPPKGKDFLHSIEHILEREKNWVWWKRDGCPPFEKQS----------MEKKAVQD----GPKKRRPRWRLGNKELSQLWKWADQNPNALTDPQRVRTPAITEYWKPLADDMDPSAGIEAEYHHKNSRVYCWKGLRFSARQ 547
            LQL D +FRRH+L+Q LILF YLK   K  +   +               V +LL   PP G+ F   +EHIL  E+NW  WK +GCP F K+            ++ A +D    GP K   +  +GN+EL++LW     N  A     R   P + E+++   +  DP   +E EY   N+  Y W+ LR  AR+
Sbjct:  310 LQLSDSNFRRHILLQYLILFQYLKGQVKFKSSNYVLTDEQSLWIEDTTKSVYQLLSENPPDGERFSKMVEHILNTEENWNSWKNEGCPSFVKERTSDTKPTRIIRKRTAPEDFLGKGPTK---KILMGNEELTRLWNLCPDNMEACKSETREHMPTLEEFFEEAIEQADPENMVENEYKAVNNSNYGWRALRLLARR 503
The following BLAST results are available for this feature:
BLAST of CN192333 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
THOC1_MOUSE1.155e-2334.01THO complex subunit 1 OS=Mus musculus GN=Thoc1 PE=... [more]
THOC1_HUMAN3.361e-2334.01THO complex subunit 1 OS=Homo sapiens GN=THOC1 PE=... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0006L15_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0006L15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN192333 ID=CN192333; Name=CN192333; organism=Citrus sinensis; type=EST; length=707bp
GAGGCTGCAGTTGAAAGATCCGAGCTTTAGACGACATGTTCTTGTGCAGT
GCCTCATATTGTTTGATTATCTAAAGGCCCCTGGAAAAAATGACAAAGAT
TTGCCATCTGAAAGCATGAAAGAAGAAATGAAGTCTTGTGAAGAGCGAGT
AAAGAAACTGCTTGAAACGACCCCGCCTAAAGGGAAGGATTTTCTTCATA
GTATTGAGCATATATTGGAACGTGAAAAGAATTGGGTGTGGTGGAAACGT
GATGGCTGTCCACCTTTTGAAAAGCAATCTATGGAGAAGAAAGCAGTTCA
AGATGGACCTAAAAAACGTAGGCCAAGGTGGAGACTTGGAAATAAAGAAC
TCTCTCAGTTGTGGAAATGGGCAGATCAAAATCCGAATGCTTTGACCGAT
CCTCAACGTGTTAGAACTCCTGCCATCACTGAATATTGGAAACCTTTGGC
TGACGATATGGACCCATCTGCAGGAATAGAAGCTGAATATCACCACAAAA
ACAGCCGAGTTTATTGCTGGAAAGGTCTCCGATTTTCAGCTCGCCAGGAC
TTGGATGGGTTTTCTAGATTTACTGACCATGGTATTGAAGGAGTTGTGCC
ACTAGAACTTTTGCCGCCACATGTCCGGTCCAGATACGAAGGTAAAGCAA
ATGACAGATCCAAACGTGCTAAAAAGGAAGATTCAAAGGTTGCTCCATCT
CAAGCTG
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