CN192323

Overview
NameCN192323
Unique NameCN192323
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length769
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2522 contig Csv1_Contig2522:15..783. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN192323 vs. ExPASy Swiss-Prot
Match: PAO_ARATH (Pheophorbide a oxygenase, chloroplastic OS=Arabidopsis thaliana GN=PAO PE=1 SV=1)

HSP 1 Score: 357.836 bits (917), Expect = 3.661e-98
Identity = 176/256 (68.75%), Postives = 194/256 (75.78%), Query Frame = 3
Query:    9 SPRKTLPFFATGTPKRQITVKSLQKRSKNL-SPLRVXXXXXXXXXXXEETVRKDEKEDYGSLVDDEYG--KESSDSKFSWRDHWYPVSLVEDLDPNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDGCGSCTRIPQAASEGPEARAIQSPRACATRFPTMVSQGLLFVWPDEYGQERANATKPPMLPDAFDKPEFSSVTIQRDLFYGYDTLMENVSDPSHIDFAHHKV 767
            S  K +PF +  T K  + V     RSK   +PLRV            E  R          +++EYG  KE   S+F WRDHWYPVSLVEDLDPN+PT FQLLGRDLVLWFD N  KW AFDD CPHRLAPLSEGR+DENGHLQCSYHGWSF GCGSCTRIPQAA+ GPEARA++SPRACA +FPTMVSQGLLFVWPDE G +RAN+ +PP LPD FDKPEFS+VTIQRDLFYGYDTLMENVSDPSHIDFAHHKV
Sbjct:   16 SQSKKIPFLSP-TTKFPLKVSISPSRSKLFHNPLRVAAPPSVPTSDSTEEKR----------IEEEYGGDKEEEGSEFKWRDHWYPVSLVEDLDPNVPTPFQLLGRDLVLWFDRNDQKWAAFDDLCPHRLAPLSEGRLDENGHLQCSYHGWSFGGCGSCTRIPQAATSGPEARAVKSPRACAIKFPTMVSQGLLFVWPDENGWDRANSIEPPRLPDDFDKPEFSTVTIQRDLFYGYDTLMENVSDPSHIDFAHHKV 260          
BLAST of CN192323 vs. ExPASy Swiss-Prot
Match: CAO_DUNSA (Chlorophyllide a oxygenase, chloroplastic OS=Dunaliella salina GN=CAO PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.347e-20
Identity = 61/180 (33.89%), Postives = 81/180 (45.00%), Query Frame = 3
Query:  240 RDHWYPVSLVEDLDPNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDGCGSCTRIPQAASEGPEARAIQSPRAC----ATRFPTMVSQGLLFVWPDEYGQERANATKPPMLPDAFDKPEFS---SVTIQRDLFYGYDTLMENVSDPSHIDFAH 758
            R+ WYP    + L+P +   F L G   VL+ D +S       D C HR  PLS G++  NGH+QC YHGW FDG G+CT++P             S R C        P +   G ++VWP +          PP LP  F  P         I  D+   +  LMEN+ D +H  F H
Sbjct:  131 RNFWYPTEFAKKLEPGMMVPFDLFGVPWVLFRDEHSAP-TCIKDSCAHRACPLSLGKVI-NGHVQCPYHGWEFDGSGACTKMP-------------STRMCHGVGVAALPCVEKDGFVWVWPGD--------GPPPDLPPDFTAPPAGYDVHAEIMVDVPVEHGLLMENLLDLAHAPFTH 287          
BLAST of CN192323 vs. ExPASy Swiss-Prot
Match: CAO_CHLRE (Chlorophyllide a oxygenase, chloroplastic OS=Chlamydomonas reinhardtii GN=CAO PE=2 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 4.287e-14
Identity = 56/187 (29.95%), Postives = 80/187 (42.78%), Query Frame = 3
Query:  207 GKESS-DSKFSWRDHWYPVSLVEDLDPNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDGCGSCTRIPQAASEGPEARAIQSPRACATRFPTMVSQGLLFVWPDEYGQERANATKPPMLPDAFDKPE--FSSVTIQRDLFYGYDTLMENVSDPSHIDFAH 758
            G ESS + +   R+ WYP      L  +    F+L G   V++ D          D+C HR  PLS G++ E G + C YHGW F+G G+CT++P      P  R +          P     G ++VWP        +      LPD    PE       I  D+   +  L+EN+ D +H  F H
Sbjct:  290 GLESSMEIEEGLRNFWYPAEFSARLPKDTLVPFELFGEPWVMFRDEKGQP-SCIRDECAHRGCPLSLGKVVE-GQVMCPYHGWEFNGDGACTKMPST----PFCRNVG-----VAALPCAEKDGFIWVWP-------GDGLPAETLPDFAQPPEGFLIHAEIMVDVPVEHGLLIENLLDLAHAPFTH 458          
BLAST of CN192323 vs. ExPASy Swiss-Prot
Match: CAO_ORYSJ (Chlorophyllide a oxygenase, chloroplastic OS=Oryza sativa subsp. japonica GN=CAO PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.525e-11
Identity = 49/189 (25.93%), Postives = 78/189 (41.27%), Query Frame = 3
Query:  234 SWRDHWYPVSLVEDLDPNLPTAFQLLGRDLVLWFDNNSNKWVAFDDK----------CPHRLAPLSEGRIDENGHLQCSYHGWSFDGCGSCTRIPQAASEGPEARAIQSPRACATRFPTMVSQGLLFVWPDEYGQERANATKPPMLPDAFDKPEFSSVTIQRDLF----YGYDTLMENVSDPSHIDFAH 758
            S ++ WYPV+   DL             D ++  D    +WV F  K          C HR  PL  G ++E G +QC YHGW +   G C ++P         R++          P    +G++++WP   G +   +T P +LP        S  TI  ++       +  L++N+ D +H  F H
Sbjct:  215 SLKNFWYPVAFSSDLKD-----------DTMVPIDCFEEQWVIFRGKDGRPGCVMNTCAHRACPLHLGSVNE-GRIQCPYHGWEYSTDGKCEKMPSTKMLNVRIRSL----------PCFEQEGMVWIWP---GNDPPKSTIPSLLPP-------SGFTIHAEIVMELPVEHGLLLDNLLDLAHAPFTH 371          
The following BLAST results are available for this feature:
BLAST of CN192323 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
PAO_ARATH3.661e-9868.75Pheophorbide a oxygenase, chloroplastic OS=Arabido... [more]
CAO_DUNSA2.347e-2033.89Chlorophyllide a oxygenase, chloroplastic OS=Dunal... [more]
CAO_CHLRE4.287e-1429.95Chlorophyllide a oxygenase, chloroplastic OS=Chlam... [more]
CAO_ORYSJ1.525e-1125.93Chlorophyllide a oxygenase, chloroplastic OS=Oryza... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0006L09_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0006L09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN192323 ID=CN192323; Name=CN192323; organism=Citrus sinensis; type=EST; length=769bp
TATTCACATCACCAAGAAAAACCCTTCCATTTTTTGCCACAGGAACCCCG
AAGCGACAAATCACGGTAAAAAGCTTGCAAAAAAGAAGCAAGAATTTGTC
TCCACTGCGAGTGGCAGCTCCTCCTTCAGACCCTGCAGCATCAGATGAAG
AAACGGTGAGAAAAGATGAGAAAGAAGATTATGGATCATTAGTCGATGAT
GAGTATGGTAAAGAGAGTTCGGATTCTAAGTTTTCTTGGAGGGATCATTG
GTACCCAGTTTCTTTAGTTGAAGATTTGGACCCGAACTTGCCAACAGCGT
TTCAGCTTCTTGGGAGAGACTTAGTTCTTTGGTTTGATAACAATTCTAAT
AAATGGGTTGCATTTGATGACAAATGCCCTCATAGACTCGCCCCATTATC
GGAAGGGCGGATCGATGAAAATGGGCATTTGCAGTGTTCATACCATGGAT
GGTCTTTTGACGGGTGTGGATCTTGCACTCGCATTCCCCAAGCAGCATCT
GAAGGTCCTGAAGCTCGTGCAATTCAGTCTCCCAGAGCGTGTGCTACGAG
GTTTCCTACAATGGTGTCTCAAGGTCTGCTATTCGTTTGGCCAGATGAGT
ATGGTCAGGAAAGAGCCAATGCCACCAAGCCACCAATGTTGCCTGATGCC
TTTGACAAACCTGAGTTCTCATCGGTCACAATTCAGCGGGATCTATTTTA
TGGCTATGACACTCTCATGGAAAATGTCTCAGATCCTTCCCACATTGATT
TTGCACATCACAAGGTTAC
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