CN192288

Overview
NameCN192288
Unique NameCN192288
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length532
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11434 contig Csv1_Contig11434:1010..1541. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CN192288 vs. ExPASy Swiss-Prot
Match: YBDL_ECOLI (Aminotransferase ybdL OS=Escherichia coli (strain K12) GN=ybdL PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 5.664e-12
Identity = 39/98 (39.80%), Postives = 56/98 (57.14%), Query Frame = -3 
Query:  231 YYEELKRDYSAKKAILVEG*NAVGFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPTSVFYMNPEDGKNLVRFPFCKDEGTLRSAVDRM 524
            +Y  L   Y  K+ ILV   N    ++ P  GTYF++VD++      D+ FC++L +E GV AIP SVF  +P   K L+R  F K E TL +A +R+
Sbjct:  287 HYLALPDFYRQKRDILVNALNESRLEILPCEGTYFLLVDYSAVSTLDDVEFCQWLTQEHGVAAIPLSVFCADPFPHK-LIRLCFAKKESTLLAAAERL 383
The following BLAST results are available for this feature:
BLAST of CN192288 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
YBDL_ECOLI5.664e-1239.80Aminotransferase ybdL OS=Escherichia coli (strain ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0006K11_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0006K11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN192288 ID=CN192288; Name=CN192288; organism=Citrus sinensis; type=EST; length=532bp
TTTTTTTTTTTTTTTATTGCAAGCCCAGTTTCTGCCCTATTCATTAATTC
AAATAATTTGATTCATTCATAAGTTTGCTAGTTTGTCTTCAAATTGTTGG
GATAGTACCTACCATTTATCCCCACATGCTTAACATCACACTACTCAAAT
CTTTAATCCACTACATCAACTGATTCAAATAAAATAGCCTTTAGCACTCA
CTTTGATCATTTTCTCCTCAGCTTCTCCTTCATCCTGTCAACTGCAGACC
TCAAAGTTCCTTCATCTTTGCAAAAGGGAAATCTCACCAAATTCTTTCCA
TCCTCTGGATTCATGTAAAATACGCTGGTCGGAATTGCCACAACCCCAAC
TTCCTTGATCAGATATTCACAAAATGCAATATCAGTTTCGTGCCCAAATG
GGGTGTGATCTACAACCACAAAGTATGTCCCACTAGATGGGAATACCTTG
AAACCAACAGCATTCTATCCCTCCACCAAAATTGCCTTCTTTGCCGAGTA
ATCTCTCTTTAACTCCTCATAGTACGTCTCCG
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