CN192284

Overview
NameCN192284
Unique NameCN192284
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length500
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN192284 vs. ExPASy Swiss-Prot
Match: PLDG1_ARATH (Phospholipase D gamma 1 OS=Arabidopsis thaliana GN=PLDGAMMA1 PE=1 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 8.003e-63
Identity = 120/164 (73.17%), Postives = 135/164 (82.32%), Query Frame = 1
Query:   10 MAAHPAYAETMSFGG-SNHGQGQVAVPFETHQGSLKVLLLHGNLDVWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVWMQHFNVPVAHSAAEVHFVVKDNDFVGSQIMGAVGIPVEKLCSGDKIEG 498
            MA HPAY ETMS GG S+HG GQ  VPF T  GSL+V LLHGNLD+WVKEAK+LPNMD FH ++G +   L  K   K+E   S KITSDPYVTVSI GAVIGRTFVISNSE+PVWMQHF+VPVAHSAAEVHFVVKD+D +GSQIMGAVGIP E+LCSG++IEG
Sbjct:    1 MAYHPAYTETMSMGGGSSHGGGQQYVPFATSSGSLRVELLHGNLDIWVKEAKHLPNMDGFHNRLGGMLSGLGRK---KVEGEKSSKITSDPYVTVSISGAVIGRTFVISNSENPVWMQHFDVPVAHSAAEVHFVVKDSDIIGSQIMGAVGIPTEQLCSGNRIEG 161          
BLAST of CN192284 vs. ExPASy Swiss-Prot
Match: PLDG3_ARATH (Phospholipase D gamma 3 OS=Arabidopsis thaliana GN=PLDGAMMA3 PE=2 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 2.757e-55
Identity = 110/169 (65.09%), Postives = 131/169 (77.51%), Query Frame = 1
Query:   10 MAAHPAYAETMSFGGSNHGQ-----GQVAVPFETHQGSLKVLLLHGNLDVWVKEAKNLPNMDMFHKK-IGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVWMQHFNVPVAHSAAEVHFVVKDNDFVGSQIMGAVGIPVEKLCSGDKIEG 498
            MA HP Y ETMS GG +  +      +  VPF+T  GSL+V LLHGNLD+WVKEAK+LPNMD FH   +G +F  L  +   K++   S KITSDPYVTVSI GAVIGRTFVISNSE+PVWMQHF+VPVAHSAA+VHFVVKD+D +GSQI+GAV IP E+LCSG++IEG
Sbjct:    1 MAYHPVYNETMSMGGGSSNEFGQWLDKQLVPFDTSSGSLRVELLHGNLDIWVKEAKHLPNMDGFHNTLVGGMFFGLGRR-NHKVDGENSSKITSDPYVTVSISGAVIGRTFVISNSENPVWMQHFDVPVAHSAAKVHFVVKDSDIIGSQIIGAVEIPTEQLCSGNRIEG 168          
BLAST of CN192284 vs. ExPASy Swiss-Prot
Match: PLDG2_ARATH (Phospholipase D gamma 2 OS=Arabidopsis thaliana GN=PLDGAMMA2 PE=1 SV=3)

HSP 1 Score: 196.052 bits (497), Expect = 7.770e-50
Identity = 102/156 (65.38%), Postives = 120/156 (76.92%), Query Frame = 1
Query:   49 GGSNHGQGQ----VAVPFETHQGSLKVLLLHGNLDVWVKEAKNLPNMDMFHKKI--GDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVWMQHFNVPVAHSAAEVHFVVKDNDFVGSQIMGAVGIPVEKLCSGDKIEG 498
            GGSNH  GQ      VP  T  GSL V LLHGNLD+WVKEAK+LPNM  +  K+  G  F +L  ++  K++   S K TSDPYVTVSI GAVIGRTFVISNSE+PVWMQHF+VPVAHSAAEVHFVVKDND +GS+I+G VGIP ++LCSG++IEG
Sbjct:    5 GGSNHEFGQWLDQQLVPLATSSGSLMVELLHGNLDIWVKEAKHLPNMICYRNKLVGGISFSELGRRIR-KVDGEKSSKFTSDPYVTVSISGAVIGRTFVISNSENPVWMQHFDVPVAHSAAEVHFVVKDNDPIGSKIIGVVGIPTKQLCSGNRIEG 159          
BLAST of CN192284 vs. ExPASy Swiss-Prot
Match: PLDB1_ARATH (Phospholipase D beta 1 OS=Arabidopsis thaliana GN=PLDBETA1 PE=2 SV=3)

HSP 1 Score: 196.052 bits (497), Expect = 7.770e-50
Identity = 95/133 (71.43%), Postives = 112/133 (84.21%), Query Frame = 1
Query:  100 QGSLKVLLLHGNLDVWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVWMQHFNVPVAHSAAEVHFVVKDNDFVGSQIMGAVGIPVEKLCSGDKIEG 498
            +GSLKVLL HGNLD+W+  AKNLPNMDMFHK +GD+FG+L      KIE  L+ KITSDPYV+VS+ GAVIGRT+V+SNSE+PVWMQHF VPVAH AAEVHFVVKD+D VGSQ++G V IPVE++ SG KIEG
Sbjct:  146 KGSLKVLLSHGNLDIWIYHAKNLPNMDMFHKTLGDMFGRL----PGKIEGQLTSKITSDPYVSVSVAGAVIGRTYVMSNSENPVWMQHFYVPVAHHAAEVHFVVKDSDVVGSQLIGLVTIPVEQIYSGAKIEG 274          
BLAST of CN192284 vs. ExPASy Swiss-Prot
Match: PLDB2_ARATH (Phospholipase D beta 2 OS=Arabidopsis thaliana GN=PLDBETA2 PE=2 SV=2)

HSP 1 Score: 190.274 bits (482), Expect = 4.263e-48
Identity = 97/148 (65.54%), Postives = 115/148 (77.70%), Query Frame = 1
Query:   55 SNHGQGQVAVPFETHQGSLKVLLLHGNLDVWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVWMQHFNVPVAHSAAEVHFVVKDNDFVGSQIMGAVGIPVEKLCSGDKIEG 498
            S H  G   VPF   + SLKVLLLHGNLD+WV  A NLPN+D+FHK +G VFG +    T+ IE  LS KITSDPYV++S+ GAVIGRT+VISNSE+PVW QHF VPVAH AAEVHFVVKD+D VGSQ++G V IPVE++ SG +IEG
Sbjct:   94 SPHSPGMHIVPFG--KASLKVLLLHGNLDIWVSCANNLPNLDLFHKTLGVVFGGM----TNMIEGQLSKKITSDPYVSISVAGAVIGRTYVISNSENPVWQQHFYVPVAHHAAEVHFVVKDSDAVGSQLIGIVTIPVEQIYSGARIEG 235          
BLAST of CN192284 vs. ExPASy Swiss-Prot
Match: PLDD1_ARATH (Phospholipase D delta OS=Arabidopsis thaliana GN=PLDDELTA PE=1 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 2.783e-23
Identity = 58/144 (40.28%), Postives = 84/144 (58.33%), Query Frame = 1
Query:  115 VLLLHGNLDVWVKEAKNLPNMDMFHKKIGDVFGKLNV--------KVTSKIESHLSDK--------ITSDPYVTVSICGAVIGRTFVISNSESPVWMQHFNVPVAHSAAEVHFVVKDNDFVGSQIMGAVGIPVEKLCSGDKIEG 498
            V+LLHG+LD+ + +A+ LPNMDMF + +  +F   N          V  + +    DK        ITSDPYVTV +  A + RT V+ NS+ P+W + FN+ +AH  A + F VKD+D  G+QI+G   IPV  + SG++I G
Sbjct:    9 VMLLHGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVPQATLARTRVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDDDVFGAQIIGTAKIPVRDIASGERISG 152          
BLAST of CN192284 vs. ExPASy Swiss-Prot
Match: PLDA1_TOBAC (Phospholipase D alpha 1 OS=Nicotiana tabacum GN=PLD1 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 4.168e-11
Identity = 46/132 (34.85%), Postives = 70/132 (53.03%), Query Frame = 1
Query:  118 LLLHGNLDVWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKI-----TSDPYVTVSICGAVIGRTFVISNS-ESPVWMQHFNVPVAHSAAEVHFVVKDNDFVGSQIMGAVGIPVEKLCSGDKIE 495
            +LLHG L V + E  NL       K+ G  F        SKI+ H+ + I     T   Y TV +  A +GRT  I N   +P W + F++  AH A+ V F VKD++ +G+ ++G   +PVE+L  G++I+
Sbjct:    4 ILLHGTLHVTIYEVDNL------QKEGGGHF-------FSKIKEHVEETIGFGKGTPAIYATVDLEKARVGRTRKIKNEPNNPRWYESFHIYCAHMASNVIFTVKDDNPIGATLIGRAYVPVEELLEGEEID 122          
The following BLAST results are available for this feature:
BLAST of CN192284 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
PLDG1_ARATH8.003e-6373.17Phospholipase D gamma 1 OS=Arabidopsis thaliana GN... [more]
PLDG3_ARATH2.757e-5565.09Phospholipase D gamma 3 OS=Arabidopsis thaliana GN... [more]
PLDG2_ARATH7.770e-5065.38Phospholipase D gamma 2 OS=Arabidopsis thaliana GN... [more]
PLDB1_ARATH7.770e-5071.43Phospholipase D beta 1 OS=Arabidopsis thaliana GN=... [more]
PLDB2_ARATH4.263e-4865.54Phospholipase D beta 2 OS=Arabidopsis thaliana GN=... [more]
PLDD1_ARATH2.783e-2340.28Phospholipase D delta OS=Arabidopsis thaliana GN=P... [more]
PLDA1_TOBAC4.168e-1134.85Phospholipase D alpha 1 OS=Nicotiana tabacum GN=PL... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0006K08_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0006K08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN192284 ID=CN192284; Name=CN192284; organism=Citrus sinensis; type=EST; length=500bp
GAGGGTTTGATGGCAGCACATCCGGCTTATGCCGAAACGATGTCGTTTGG
GGGATCAAATCATGGTCAGGGCCAAGTAGCTGTTCCTTTTGAGACCCATC
AAGGGTCTTTAAAAGTTCTGCTCTTGCATGGGAATTTAGATGTCTGGGTC
AAGGAGGCCAAAAACCTCCCTAATATGGACATGTTTCACAAGAAGATAGG
TGACGTCTTTGGTAAGTTAAATGTAAAAGTAACCAGCAAAATTGAGAGTC
ACTTGTCTGATAAGATAACCAGTGACCCTTACGTCACTGTTTCTATTTGT
GGTGCTGTAATTGGGAGGACTTTTGTGATTAGTAATAGCGAAAGCCCCGT
CTGGATGCAGCATTTCAATGTGCCTGTTGCACACTCTGCTGCTGAAGTTC
ACTTTGTTGTTAAAGATAATGATTTTGTTGGCTCCCAAATTATGGGTGCT
GTGGGGATACCCGTTGAGAAATTATGCTCAGGAGACAAAATTGAGGGAGC
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