CN192265

Overview
NameCN192265
Unique NameCN192265
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length642
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN192265_ssr78 microsatellite CN192265_ssr78:78..89. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7034 contig Csv1_Contig7034:837..1476. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN192265 vs. ExPASy Swiss-Prot
Match: CYSP1_MAIZE (Cysteine proteinase 1 OS=Zea mays GN=CCP1 PE=2 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 2.796e-55
Identity = 97/129 (75.19%), Postives = 111/129 (86.05%), Query Frame = -1
Query:  265 CKFDKSKIAAAVSNFSVISSEEDQMAANLVKHGPLAVGINAVWMQTYFGGVSCPYICGKYLDHGGLIVGYGSSGFAPIRFKGKPYWIIKNSWGENWGENGYYKICMG---RNVCGVDSRVSFVGAIHTT 642
            CKFDKSKI A+V NFSV+S +E Q++ANL+KHGPLA+GINA +MQTY GGVSCPYICG++LDHG L+VGYG+SGFAPIR K KPYWIIKNSWGENWGENGYYKIC G   RN CGVDS VS V A+H +
Sbjct:  241 CKFDKSKIVASVQNFSVVSVDEAQISANLIKHGPLAIGINAAYMQTYIGGVSCPYICGRHLDHGVLLVGYGASGFAPIRLKDKPYWIIKNSWGENWGENGYYKICRGSNVRNKCGVDSMVSTVSAVHAS 369          
BLAST of CN192265 vs. ExPASy Swiss-Prot
Match: RD19A_ARATH (Cysteine proteinase RD19a OS=Arabidopsis thaliana GN=RD19A PE=2 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 8.418e-52
Identity = 93/128 (72.66%), Postives = 110/128 (85.94%), Query Frame = -1
Query:  259 CKFDKSKIAAAVSNFSVISSEEDQMAANLVKHGPLAVGINAVWMQTYFGGVSCPYICGKYLDHGGLIVGYGSSGFAPIRFKGKPYWIIKNSWGENWGENGYYKICMGRNVCGVDSRVSFVGAIHTTSS 642
            CK DKSKI A+VSNFSVIS +E+Q+AANLVK+GPLAV INA +MQTY GGVSCPYIC + L+HG L+VGYG++G+AP RFK KPYWIIKNSWGE WGENG+YKIC GRN+CGVDS VS V A  +T++
Sbjct:  240 CKLDKSKIVASVSNFSVISIDEEQIAANLVKNGPLAVAINAGYMQTYIGGVSCPYICTRRLNHGVLLVGYGAAGYAPARFKEKPYWIIKNSWGETWGENGFYKICKGRNICGVDSMVSTVAATVSTTA 367          
BLAST of CN192265 vs. ExPASy Swiss-Prot
Match: CYSP_PEA (Cysteine proteinase 15A OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 5.456e-51
Identity = 91/123 (73.98%), Postives = 103/123 (83.74%), Query Frame = -1
Query:  277 CKFDKSKIAAAVSNFSVISSEEDQMAANLVKHGPLAVGINAVWMQTYFGGVSCPYICGKY-LDHGGLIVGYGSSGFAPIRFKGKPYWIIKNSWGENWGENGYYKICMGRNVCGVDSRVSFVGA 642
            CKFDKSK+ A+VSNFSV++ +EDQ+AANLVK+GPLAV INA WMQTY  GVSCPY+C K  LDHG L+VG+G   +APIR K KPYWIIKNSWG+NWGE GYYKIC GRNVCGVDS VS V A
Sbjct:  236 CKFDKSKVVASVSNFSVVTLDEDQIAANLVKNGPLAVAINAAWMQTYMSGVSCPYVCAKSRLDHGVLLVGFGKGAYAPIRLKEKPYWIIKNSWGQNWGEQGYYKICRGRNVCGVDSMVSTVAA 358          
BLAST of CN192265 vs. ExPASy Swiss-Prot
Match: A494_ARATH (Probable cysteine proteinase A494 OS=Arabidopsis thaliana GN=At2g21430 PE=2 SV=2)

HSP 1 Score: 198.749 bits (504), Expect = 2.073e-50
Identity = 92/127 (72.44%), Postives = 107/127 (84.25%), Query Frame = -1
Query:  262 CKFDKSKIAAAVSNFSVISSEEDQMAANLVKHGPLAVGINAVWMQTYFGGVSCPYICGKYLDHGGLIVGYGSSGFAPIRFKGKPYWIIKNSWGENWGENGYYKICMGRNVCGVDSRVSFVGAIHTTS 642
            CK D+SKI A+VSNFSV+S  EDQ+AANL+K+GPLAV INA +MQTY GGVSCPYIC + L+HG L+VGYGS+GF+  R K KPYWIIKNSWGE+WGENG+YKIC GRN+CGVDS VS V A  TTS
Sbjct:  237 CKLDRSKIVASVSNFSVVSINEDQIAANLIKNGPLAVAINAAYMQTYIGGVSCPYICSRRLNHGVLLVGYGSAGFSQARLKEKPYWIIKNSWGESWGENGFYKICKGRNICGVDSLVSTVAA--TTS 361          
BLAST of CN192265 vs. ExPASy Swiss-Prot
Match: PAPA5_CARPA (Cysteine proteinase (Fragment) OS=Carica papaya PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 3.545e-42
Identity = 74/95 (77.89%), Postives = 83/95 (87.37%), Query Frame = -1
Query:  262 GPLAVGINAVWMQTYFGGVSCPYICGKYLDHGGLIVGYGSSGFAPIRFKGKPYWIIKNSWGENWGENGYYKICMGRNVCGVDSRVSFVGAIHTTS 546
            GPLAV INA +MQTY GGVSCPYIC + L+HG L+VGYGS+G+APIR K KPYW+IKNSWGENWGENGYYKIC GRN+CGVDS VS V A+HTTS
Sbjct:    1 GPLAVAINAAYMQTYIGGVSCPYICSRRLNHGVLLVGYGSAGYAPIRLKEKPYWVIKNSWGENWGENGYYKICRGRNICGVDSMVSTVAAVHTTS 95          
BLAST of CN192265 vs. ExPASy Swiss-Prot
Match: CYSP1_DICDI (Cysteine proteinase 1 OS=Dictyostelium discoideum GN=cprA PE=1 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 1.829e-22
Identity = 55/118 (46.61%), Postives = 69/118 (58.47%), Query Frame = -1
Query:  289 CKFDKSKIAAAVSNFSVISSEEDQMAANLVKHGPLAVGINAVWMQTYFGGVSCPYICGKYLDHGGLIVGYGSSGFAPIRFKGKPYWIIKNSWGENWGENGYYKICMGRNVCGVDSRVS 642
            C F+ + I A +SNF++I   E  MA  +V  GPLA+  +AV  Q Y GGV         LDHG LIVGY +     I  K  PYWI+KNSWG +WGE GY  +  G+N CGV + VS
Sbjct:  224 CNFNSANIGAKISNFTMIPKNETVMAGYIVSTGPLAIAADAVEWQFYIGGVFDIPCNPNSLDHGILIVGYSAKN--TIFRKNMPYWIVKNSWGADWGEQGYIYLRRGKNTCGVSNFVS 339          
BLAST of CN192265 vs. ExPASy Swiss-Prot
Match: CPR1_DROME (Putative cysteine proteinase CG12163 OS=Drosophila melanogaster GN=CG12163 PE=2 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 1.548e-21
Identity = 55/117 (47.01%), Postives = 72/117 (61.54%), Query Frame = -1
Query:  304 CKFDKSKIAAAVSNF-SVISSEEDQMAANLVKHGPLAVGINAVWMQTYFGGVSCPY--ICGKY-LDHGGLIVGYGSSGFAPIRFKGKPYWIIKNSWGENWGENGYYKICMGRNVCGV 642
            C F+++     V+ F  +    E  M   L+ +GP+++GINA  MQ Y GGVS P+  +C K  LDHG L+VGYG S + P   K  PYWI+KNSWG  WGE GYY++  G N CGV
Sbjct:  489 CHFNRTLSHVQVAGFVDLPKGNETAMQEWLLANGPISIGINANAMQFYRGGVSHPWKALCSKKNLDHGVLVVGYGVSDY-PNFHKTLPYWIVKNSWGPRWGEQGYYRVYRGDNTCGV 604          
BLAST of CN192265 vs. ExPASy Swiss-Prot
Match: CATF_HUMAN (Cathepsin F OS=Homo sapiens GN=CTSF PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 9.394e-19
Identity = 49/121 (40.50%), Postives = 67/121 (55.37%), Query Frame = -1
Query:  289 CKFDKSKIAAAVSNFSVISSEEDQMAANLVKHGPLAVGINAVWMQTYFGGVSCPY--ICGKYL-DHGGLIVGYGSSGFAPIRFKGKPYWIIKNSWGENWGENGYYKICMGRNVCGVDSRVS 642
            C F   K    +++   +S  E ++AA L K GP++V INA  MQ Y  G+S P   +C  +L DH  L+VGYG+    P       +W IKNSWG +WGE GYY +  G   CGV++  S
Sbjct:  366 CNFSAEKAKVYINDSVELSQNEQKLAAWLAKRGPISVAINAFGMQFYRHGISRPLRPLCSPWLIDHAVLLVGYGNRSDVP-------FWAIKNSWGTDWGEKGYYYLHRGSGACGVNTMAS 479          
BLAST of CN192265 vs. ExPASy Swiss-Prot
Match: CATL_SCHMA (Cathepsin L OS=Schistosoma mansoni GN=CL1 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.093e-18
Identity = 45/118 (38.14%), Postives = 72/118 (61.02%), Query Frame = -1
Query:  298 CKFDKSKIAAAVSNFSVISSEEDQMAANLVKHGPLAVGINAVWMQTYFGGVSCPY--ICGKYL-DHGGLIVGYGSSGFAPIRFKGKPYWIIKNSWGENWGENGYYKICMGRNVCGVDS 642
            C      +A  +++   ++ +E ++AA L  +  ++VG+NA+ +Q Y  G+S P+   C KYL DH  L+VGYG S       K +P+WI+KNSWG  WGENGY+++  G   CG+++
Sbjct:  200 CHLKTDGVAVYINSSVNLTQDETELAAWLYHNSTISVGMNALLLQFYQHGISHPWWIFCSKYLLDHAVLLVGYGVSE------KNEPFWIVKNSWGVEWGENGYFRMYRGDGSCGINT 311          
BLAST of CN192265 vs. ExPASy Swiss-Prot
Match: CATF_MOUSE (Cathepsin F OS=Mus musculus GN=Ctsf PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.662e-18
Identity = 46/121 (38.02%), Postives = 68/121 (56.20%), Query Frame = -1
Query:  289 CKFDKSKIAAAVSNFSVISSEEDQMAANLVKHGPLAVGINAVWMQTYFGGVSCPY--ICGK-YLDHGGLIVGYGSSGFAPIRFKGKPYWIIKNSWGENWGENGYYKICMGRNVCGVDSRVS 642
            C F        +++   +S  E+++AA L + GP++V INA  MQ Y  G++ P+  +C   ++DH  L+VGYG+           PYW IKNSWG +WGE GYY +  G   CGV++  S
Sbjct:  344 CNFSAQMAKVYINDSVELSRNENKIAAWLAQKGPISVAINAFGMQFYRHGIAHPFRPLCSPWFIDHAVLLVGYGNRS-------NIPYWAIKNSWGSDWGEEGYYYLYRGSGACGVNTMAS 457          
The following BLAST results are available for this feature:
BLAST of CN192265 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 91
Match NameE-valueIdentityDescription
CYSP1_MAIZE2.796e-5575.19Cysteine proteinase 1 OS=Zea mays GN=CCP1 PE=2 SV=... [more]
RD19A_ARATH8.418e-5272.66Cysteine proteinase RD19a OS=Arabidopsis thaliana ... [more]
CYSP_PEA5.456e-5173.98Cysteine proteinase 15A OS=Pisum sativum PE=2 SV=1[more]
A494_ARATH2.073e-5072.44Probable cysteine proteinase A494 OS=Arabidopsis t... [more]
PAPA5_CARPA3.545e-4277.89Cysteine proteinase (Fragment) OS=Carica papaya PE... [more]
CYSP1_DICDI1.829e-2246.61Cysteine proteinase 1 OS=Dictyostelium discoideum ... [more]
CPR1_DROME1.548e-2147.01Putative cysteine proteinase CG12163 OS=Drosophila... [more]
CATF_HUMAN9.394e-1940.50Cathepsin F OS=Homo sapiens GN=CTSF PE=1 SV=1[more]
CATL_SCHMA2.093e-1838.14Cathepsin L OS=Schistosoma mansoni GN=CL1 PE=2 SV=... [more]
CATF_MOUSE4.662e-1838.02Cathepsin F OS=Mus musculus GN=Ctsf PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0006J19_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0006J19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN192265 ID=CN192265; Name=CN192265; organism=Citrus sinensis; type=EST; length=642bp
TTTTTTTTTTTTTTTTTCCAAAAAAAAAAAATATTAATACCCTCTTCAAT
AACAATTCCGTAGCAGGGGTAACTATAAAATAAATAAATATTACCTTCTG
ACATGACATATGCTTAAATATTACAAGAGCATAAAAAGTTCATGCCCCCC
CCCAGGCATGTAGGCATCGTTATAATTGCAAACGGATTTTTAAAAGGATA
TCCTATAATATCTAGGTACAAAAGCTCCCCTTGCCTAGCACAACCTCCAT
AATGTCTAGCTTGAGGTTGTATGGATAGCACCTACAAATGAAACCCTGGA
GTCCACCCCACAAACATTGCGACCCATGCAAATTTTATAATATCCATTCT
CTCCCCAGTTCTCTCCCCAGGAGTTCTTTATGATCCAGTAAGGCTTCCCC
TTGAATCTGATCGGGGCGAAACCTGAGGATCCATAGCCCACGATAAGCCC
TCCATGATCCAAATACTTCCCGCAAATGTATGGGCATGAAACCCCCCCAA
AATATGTTTGCATCCAAACGGCATTGATACCCACTGCCAAAGGGCCATGT
TTCACCAAATTTGCAGCCATTTGATCTTCCTCAGAAGAAATAACACTGAA
ATTAGATACAGCTGCCGCAATTTTGCTTTTGTCAAATTTGCA
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