CN192259
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CN192259 vs. ExPASy Swiss-Prot
Match: CNGC2_ARATH (Cyclic nucleotide-gated ion channel 2 OS=Arabidopsis thaliana GN=CNGC2 PE=1 SV=1) HSP 1 Score: 266.544 bits (680), Expect = 9.644e-71 Identity = 130/167 (77.84%), Postives = 145/167 (86.83%), Query Frame = -2 Query: 224 REGDPVPRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFVCMESIEAFGLDAKNLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRMRTRGPVIS-----VTENG-EGNESNRLMRYAAMFMSIRPHDHLE 706 REGDPV RM+FI+RGR+KR QSLSKG++ATS LEPGG+LGDELLSWCLRRPF+DRLP SSATFVC+E+IEAF L +++LRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQ AWRR R RTRG I V+EN EGN RL++YAAMFMSIRPHDHLE Sbjct: 560 REGDPVQRMIFIMRGRVKRIQSLSKGVLATSTLEPGGYLGDELLSWCLRRPFLDRLPPSSATFVCLENIEAFSLGSEDLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQMAWRRRRKRTRGENIGGSMSPVSENSIEGNSERRLLQYAAMFMSIRPHDHLE 726
BLAST of CN192259 vs. ExPASy Swiss-Prot
Match: CNGC4_ARATH (Cyclic nucleotide-gated ion channel 4 OS=Arabidopsis thaliana GN=CNGC4 PE=2 SV=2) HSP 1 Score: 174.481 bits (441), Expect = 4.988e-43 Identity = 85/167 (50.90%), Postives = 115/167 (68.86%), Query Frame = -2 Query: 236 REGDPVPRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFVCMESIEAFGLDAKNLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYR----------MRTRGPVISVTENGEGNESNRLMRYAAMFMSIRPH 706 +EGD V RM+F+VRG ++ Q L G+ + +L PG F GDELLSWCLRRPF++RLP SS+T V +E+ EAFGLDA++++Y+T HFRY F NE++KR+ARYYS WRTWAAV +Q AWRRY+ +R R P+ GE ++L YAA+ S +P+ Sbjct: 525 KEGDAVQRMLFVVRGHLQSSQLLRDGVKSCCMLGPGNFSGDELLSWCLRRPFVERLPPSSSTLVTLETTEAFGLDAEDVKYVTQHFRYTFVNEKVKRSARYYSPGWRTWAAVAVQLAWRRYKHRLTLTSLSFIRPRRPLSRCASLGE----DKLRLYAAILTSPKPN 687
BLAST of CN192259 vs. ExPASy Swiss-Prot
Match: CNG14_ARATH (Probable cyclic nucleotide-gated ion channel 14 OS=Arabidopsis thaliana GN=CNGC14 PE=2 SV=2) HSP 1 Score: 112.464 bits (280), Expect = 2.328e-24 Identity = 57/151 (37.75%), Postives = 88/151 (58.28%), Query Frame = -2 Query: 260 REGDPVPRMVFIVRGRIKRCQSLS--KGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFVCMESIEAFGLDAKNLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRMRTRGPVISVTENGEGNESNRLMRYAA 706 REGDPV M+FI+RG+++ + G + L PG F G+ELL+W L LP+S+ T +E +EAF L A +L+++ + FR + +++L+ T RYYS WRTWAA +Q AWRRY+ + +S+ E+ + + AA Sbjct: 510 REGDPVTEMLFIIRGKLESSTTNGGRTGFFNSITLRPGDFCGEELLAWALLPKSTVNLPSSTRTVRALEEVEAFALQAGDLKFVANQFR-RLHSKKLQHTFRYYSHQWRTWAACFVQVAWRRYKRKKLAKSLSLAESFSSYDEEEAVAVAA 659
BLAST of CN192259 vs. ExPASy Swiss-Prot
Match: CNG17_ARATH (Probable cyclic nucleotide-gated ion channel 17 OS=Arabidopsis thaliana GN=CNGC17 PE=2 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 5.733e-23 Identity = 56/142 (39.44%), Postives = 86/142 (60.56%), Query Frame = -2 Query: 287 REGDPVPRMVFIVRGRIKRCQSLS--KGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFVCMESIEAFGLDAKNLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRMRTRGPVISVTENGEGNE 706 REGD + M+FI+RGR++ + G + +L PG F G+ELLSW L LP+S+ T + +EAF L A++L+++ + FR + +++L+ T R+YS +WRTWAA IQ AWRRY+ R ++ E+ E E Sbjct: 510 REGDLISEMLFIIRGRLESSTTNGGRTGFFNSIILRPGDFCGEELLSWALLPKSTLNLPSSTRTVRALVEVEAFALRAEDLKFVANQFR-RLHSKKLQHTFRFYSHHWRTWAACFIQAAWRRYKRRVMENNLTAIESMENEE 650
BLAST of CN192259 vs. ExPASy Swiss-Prot
Match: CNGC7_ARATH (Putative cyclic nucleotide-gated ion channel 7 OS=Arabidopsis thaliana GN=CNGC7 PE=2 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 6.339e-22 Identity = 53/139 (38.13%), Postives = 81/139 (58.27%), Query Frame = -2 Query: 296 REGDPVPRMVFIVRGRIKRCQSLS--KGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFVCMESIEAFGLDAKNLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRMRTRGPVISVTENGE 706 REGDPV M+FI+RGR++ + G +L+ G F G+ELL+W L LP+S+ T + +EAF L+A+ L+++ FR + + ++++T R+YS WRTWA+ IQ AWRRY R + + E E Sbjct: 531 REGDPVNEMMFIIRGRLESVTTDGGRSGFFNRGLLKEGDFCGEELLTWALDPKAGSNLPSSTRTVKALTEVEAFALEAEELKFVASQFR-RLHSRQVQQTFRFYSQQWRTWASCFIQAAWRRYSRRKNAELRRIEEKEE 668
BLAST of CN192259 vs. ExPASy Swiss-Prot
Match: CNGC9_ARATH (Putative cyclic nucleotide-gated ion channel 9 OS=Arabidopsis thaliana GN=CNGC9 PE=1 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 1.412e-21 Identity = 56/142 (39.44%), Postives = 83/142 (58.45%), Query Frame = -2 Query: 290 REGDPVPRMVFIVRGRIKRCQSLS--KGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFVCMESIEAFGLDAKNLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRY-RMRTRGPVISVTENGEGN 706 REGDPV M+FI+RGR++ + G S+L+ G F G+ELL+W L LP+S+ T + +EAF L A L+++ FR + + +++ T R+YS WRTWAA+ IQ AWRRY + + + E GEG+ Sbjct: 542 REGDPVNEMLFIIRGRLESVTTDGGRSGFFNRSLLKEGDFCGEELLTWALDPKSGSNLPSSTRTAKALTEVEAFALIADELKFVASQFR-RLHSRQVQHTFRFYSQQWRTWAAIFIQAAWRRYVKKKKLEQLRKEEEEGEGS 682
BLAST of CN192259 vs. ExPASy Swiss-Prot
Match: CNG18_ARATH (Putative cyclic nucleotide-gated ion channel 18 OS=Arabidopsis thaliana GN=CNGC18 PE=2 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 1.844e-21 Identity = 50/137 (36.50%), Postives = 81/137 (59.12%), Query Frame = -2 Query: 302 REGDPVPRMVFIVRGRIKRCQSLS--KGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFVCMESIEAFGLDAKNLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRMRTRGPVISVTEN 706 REGDPV M+F++RG+I+ + G ++ L PG F G+ELL+W L LP+S+ + + +EAF L A++L+++ F+ + +++L+ RYYS WR W A +Q AWRRY+ R +S+ E+ Sbjct: 478 REGDPVNEMLFVIRGQIESSTTNGGRSGFFNSTTLRPGDFCGEELLTWALMPNSTLNLPSSTRSVRALSEVEAFALSAEDLKFVAHQFK-RLQSKKLQHAFRYYSHQWRAWGACFVQSAWRRYKRRKLAKELSLHES 613
BLAST of CN192259 vs. ExPASy Swiss-Prot
Match: CNGC6_ARATH (Probable cyclic nucleotide-gated ion channel 6 OS=Arabidopsis thaliana GN=CNGC6 PE=1 SV=2) HSP 1 Score: 102.064 bits (253), Expect = 3.146e-21 Identity = 53/128 (41.41%), Postives = 76/128 (59.38%), Query Frame = -2 Query: 329 REGDPVPRMVFIVRGRIKRCQSLS--KGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFVCMESIEAFGLDAKNLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRMRTR 706 REGDPV M+FI+RGR++ + G S+L+ G F GDELL+W L LP+S+ T + +EAF L A L+++ FR + + +++ T R+YS WRTWAA +Q AWRRY R + Sbjct: 543 REGDPVNEMLFIIRGRLESVTTDGGRSGFYNRSLLKEGDFCGDELLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFVASQFR-RLHSRQVQHTFRFYSQQWRTWAACFMQAAWRRYIKRKK 669
BLAST of CN192259 vs. ExPASy Swiss-Prot
Match: CNGC8_ARATH (Putative cyclic nucleotide-gated ion channel 8 OS=Arabidopsis thaliana GN=CNGC8 PE=2 SV=2) HSP 1 Score: 101.293 bits (251), Expect = 5.366e-21 Identity = 51/126 (40.48%), Postives = 77/126 (61.11%), Query Frame = -2 Query: 335 REGDPVPRMVFIVRGRIKRCQSLS--KGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFVCMESIEAFGLDAKNLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRMR 706 REGDPV M+FI+RGR++ + G +L+ G F G+ELL+W L LP+S+ T + +EAF L+A+ L+++ FR + + ++++T R+YS WRTWAA IQ AWRR+ R Sbjct: 537 REGDPVNEMLFIIRGRLESVTTDGGRSGFFNRGLLKEGDFCGEELLTWALDPKAGSNLPSSTRTVKALTEVEAFALEAEELKFVASQFR-RLHSRQVQQTFRFYSQQWRTWAACFIQAAWRRHLRR 661
BLAST of CN192259 vs. ExPASy Swiss-Prot
Match: CNGC5_ARATH (Probable cyclic nucleotide-gated ion channel 5 OS=Arabidopsis thaliana GN=CNGC5 PE=2 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 9.153e-21 Identity = 52/128 (40.62%), Postives = 77/128 (60.16%), Query Frame = -2 Query: 329 REGDPVPRMVFIVRGRIKRCQSLS--KGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFVCMESIEAFGLDAKNLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRMRTR 706 REGDPV M+FI+RGR++ + G S+L+ G F G+ELL+W L LP+S+ T + +EAF L ++ L+++ FR + + +++ T R+YS WRTWAA IQ AWRRY R + Sbjct: 527 REGDPVDEMLFIIRGRLESVTTDGGRSGFFNRSLLKEGEFCGEELLTWALDPKSGVNLPSSTRTVKALTEVEAFALTSEELKFVASQFR-RLHSRQVQHTFRFYSHQWRTWAACFIQAAWRRYCKRKK 653 The following BLAST results are available for this feature:
BLAST of CN192259 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 19
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Sequences
The
following sequences are available for this feature:
EST sequence >CN192259 ID=CN192259; Name=CN192259; organism=Citrus sinensis; type=EST; length=707bpback to top |