CN192259

Overview
NameCN192259
Unique NameCN192259
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length707
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN192259_ssr165 microsatellite CN192259_ssr165:165..179. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5299 contig Csv1_Contig5299:348..1053. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN192259 vs. ExPASy Swiss-Prot
Match: CNGC2_ARATH (Cyclic nucleotide-gated ion channel 2 OS=Arabidopsis thaliana GN=CNGC2 PE=1 SV=1)

HSP 1 Score: 266.544 bits (680), Expect = 9.644e-71
Identity = 130/167 (77.84%), Postives = 145/167 (86.83%), Query Frame = -2
Query:  224 REGDPVPRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFVCMESIEAFGLDAKNLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRMRTRGPVIS-----VTENG-EGNESNRLMRYAAMFMSIRPHDHLE 706
            REGDPV RM+FI+RGR+KR QSLSKG++ATS LEPGG+LGDELLSWCLRRPF+DRLP SSATFVC+E+IEAF L +++LRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQ AWRR R RTRG  I      V+EN  EGN   RL++YAAMFMSIRPHDHLE
Sbjct:  560 REGDPVQRMIFIMRGRVKRIQSLSKGVLATSTLEPGGYLGDELLSWCLRRPFLDRLPPSSATFVCLENIEAFSLGSEDLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQMAWRRRRKRTRGENIGGSMSPVSENSIEGNSERRLLQYAAMFMSIRPHDHLE 726          
BLAST of CN192259 vs. ExPASy Swiss-Prot
Match: CNGC4_ARATH (Cyclic nucleotide-gated ion channel 4 OS=Arabidopsis thaliana GN=CNGC4 PE=2 SV=2)

HSP 1 Score: 174.481 bits (441), Expect = 4.988e-43
Identity = 85/167 (50.90%), Postives = 115/167 (68.86%), Query Frame = -2
Query:  236 REGDPVPRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFVCMESIEAFGLDAKNLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYR----------MRTRGPVISVTENGEGNESNRLMRYAAMFMSIRPH 706
            +EGD V RM+F+VRG ++  Q L  G+ +  +L PG F GDELLSWCLRRPF++RLP SS+T V +E+ EAFGLDA++++Y+T HFRY F NE++KR+ARYYS  WRTWAAV +Q AWRRY+          +R R P+      GE    ++L  YAA+  S +P+
Sbjct:  525 KEGDAVQRMLFVVRGHLQSSQLLRDGVKSCCMLGPGNFSGDELLSWCLRRPFVERLPPSSSTLVTLETTEAFGLDAEDVKYVTQHFRYTFVNEKVKRSARYYSPGWRTWAAVAVQLAWRRYKHRLTLTSLSFIRPRRPLSRCASLGE----DKLRLYAAILTSPKPN 687          
BLAST of CN192259 vs. ExPASy Swiss-Prot
Match: CNG14_ARATH (Probable cyclic nucleotide-gated ion channel 14 OS=Arabidopsis thaliana GN=CNGC14 PE=2 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 2.328e-24
Identity = 57/151 (37.75%), Postives = 88/151 (58.28%), Query Frame = -2
Query:  260 REGDPVPRMVFIVRGRIKRCQSLS--KGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFVCMESIEAFGLDAKNLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRMRTRGPVISVTENGEGNESNRLMRYAA 706
            REGDPV  M+FI+RG+++   +     G   +  L PG F G+ELL+W L       LP+S+ T   +E +EAF L A +L+++ + FR +  +++L+ T RYYS  WRTWAA  +Q AWRRY+ +     +S+ E+    +    +  AA
Sbjct:  510 REGDPVTEMLFIIRGKLESSTTNGGRTGFFNSITLRPGDFCGEELLAWALLPKSTVNLPSSTRTVRALEEVEAFALQAGDLKFVANQFR-RLHSKKLQHTFRYYSHQWRTWAACFVQVAWRRYKRKKLAKSLSLAESFSSYDEEEAVAVAA 659          
BLAST of CN192259 vs. ExPASy Swiss-Prot
Match: CNG17_ARATH (Probable cyclic nucleotide-gated ion channel 17 OS=Arabidopsis thaliana GN=CNGC17 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.733e-23
Identity = 56/142 (39.44%), Postives = 86/142 (60.56%), Query Frame = -2
Query:  287 REGDPVPRMVFIVRGRIKRCQSLS--KGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFVCMESIEAFGLDAKNLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRMRTRGPVISVTENGEGNE 706
            REGD +  M+FI+RGR++   +     G   + +L PG F G+ELLSW L       LP+S+ T   +  +EAF L A++L+++ + FR +  +++L+ T R+YS +WRTWAA  IQ AWRRY+ R     ++  E+ E  E
Sbjct:  510 REGDLISEMLFIIRGRLESSTTNGGRTGFFNSIILRPGDFCGEELLSWALLPKSTLNLPSSTRTVRALVEVEAFALRAEDLKFVANQFR-RLHSKKLQHTFRFYSHHWRTWAACFIQAAWRRYKRRVMENNLTAIESMENEE 650          
BLAST of CN192259 vs. ExPASy Swiss-Prot
Match: CNGC7_ARATH (Putative cyclic nucleotide-gated ion channel 7 OS=Arabidopsis thaliana GN=CNGC7 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.339e-22
Identity = 53/139 (38.13%), Postives = 81/139 (58.27%), Query Frame = -2
Query:  296 REGDPVPRMVFIVRGRIKRCQSLS--KGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFVCMESIEAFGLDAKNLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRMRTRGPVISVTENGE 706
            REGDPV  M+FI+RGR++   +     G     +L+ G F G+ELL+W L       LP+S+ T   +  +EAF L+A+ L+++   FR +  + ++++T R+YS  WRTWA+  IQ AWRRY  R    +  + E  E
Sbjct:  531 REGDPVNEMMFIIRGRLESVTTDGGRSGFFNRGLLKEGDFCGEELLTWALDPKAGSNLPSSTRTVKALTEVEAFALEAEELKFVASQFR-RLHSRQVQQTFRFYSQQWRTWASCFIQAAWRRYSRRKNAELRRIEEKEE 668          
BLAST of CN192259 vs. ExPASy Swiss-Prot
Match: CNGC9_ARATH (Putative cyclic nucleotide-gated ion channel 9 OS=Arabidopsis thaliana GN=CNGC9 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.412e-21
Identity = 56/142 (39.44%), Postives = 83/142 (58.45%), Query Frame = -2
Query:  290 REGDPVPRMVFIVRGRIKRCQSLS--KGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFVCMESIEAFGLDAKNLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRY-RMRTRGPVISVTENGEGN 706
            REGDPV  M+FI+RGR++   +     G    S+L+ G F G+ELL+W L       LP+S+ T   +  +EAF L A  L+++   FR +  + +++ T R+YS  WRTWAA+ IQ AWRRY + +    +    E GEG+
Sbjct:  542 REGDPVNEMLFIIRGRLESVTTDGGRSGFFNRSLLKEGDFCGEELLTWALDPKSGSNLPSSTRTAKALTEVEAFALIADELKFVASQFR-RLHSRQVQHTFRFYSQQWRTWAAIFIQAAWRRYVKKKKLEQLRKEEEEGEGS 682          
BLAST of CN192259 vs. ExPASy Swiss-Prot
Match: CNG18_ARATH (Putative cyclic nucleotide-gated ion channel 18 OS=Arabidopsis thaliana GN=CNGC18 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.844e-21
Identity = 50/137 (36.50%), Postives = 81/137 (59.12%), Query Frame = -2
Query:  302 REGDPVPRMVFIVRGRIKRCQSLS--KGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFVCMESIEAFGLDAKNLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRMRTRGPVISVTEN 706
            REGDPV  M+F++RG+I+   +     G   ++ L PG F G+ELL+W L       LP+S+ +   +  +EAF L A++L+++   F+ +  +++L+   RYYS  WR W A  +Q AWRRY+ R     +S+ E+
Sbjct:  478 REGDPVNEMLFVIRGQIESSTTNGGRSGFFNSTTLRPGDFCGEELLTWALMPNSTLNLPSSTRSVRALSEVEAFALSAEDLKFVAHQFK-RLQSKKLQHAFRYYSHQWRAWGACFVQSAWRRYKRRKLAKELSLHES 613          
BLAST of CN192259 vs. ExPASy Swiss-Prot
Match: CNGC6_ARATH (Probable cyclic nucleotide-gated ion channel 6 OS=Arabidopsis thaliana GN=CNGC6 PE=1 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 3.146e-21
Identity = 53/128 (41.41%), Postives = 76/128 (59.38%), Query Frame = -2
Query:  329 REGDPVPRMVFIVRGRIKRCQSLS--KGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFVCMESIEAFGLDAKNLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRMRTR 706
            REGDPV  M+FI+RGR++   +     G    S+L+ G F GDELL+W L       LP+S+ T   +  +EAF L A  L+++   FR +  + +++ T R+YS  WRTWAA  +Q AWRRY  R +
Sbjct:  543 REGDPVNEMLFIIRGRLESVTTDGGRSGFYNRSLLKEGDFCGDELLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFVASQFR-RLHSRQVQHTFRFYSQQWRTWAACFMQAAWRRYIKRKK 669          
BLAST of CN192259 vs. ExPASy Swiss-Prot
Match: CNGC8_ARATH (Putative cyclic nucleotide-gated ion channel 8 OS=Arabidopsis thaliana GN=CNGC8 PE=2 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 5.366e-21
Identity = 51/126 (40.48%), Postives = 77/126 (61.11%), Query Frame = -2
Query:  335 REGDPVPRMVFIVRGRIKRCQSLS--KGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFVCMESIEAFGLDAKNLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRMR 706
            REGDPV  M+FI+RGR++   +     G     +L+ G F G+ELL+W L       LP+S+ T   +  +EAF L+A+ L+++   FR +  + ++++T R+YS  WRTWAA  IQ AWRR+  R
Sbjct:  537 REGDPVNEMLFIIRGRLESVTTDGGRSGFFNRGLLKEGDFCGEELLTWALDPKAGSNLPSSTRTVKALTEVEAFALEAEELKFVASQFR-RLHSRQVQQTFRFYSQQWRTWAACFIQAAWRRHLRR 661          
BLAST of CN192259 vs. ExPASy Swiss-Prot
Match: CNGC5_ARATH (Probable cyclic nucleotide-gated ion channel 5 OS=Arabidopsis thaliana GN=CNGC5 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.153e-21
Identity = 52/128 (40.62%), Postives = 77/128 (60.16%), Query Frame = -2
Query:  329 REGDPVPRMVFIVRGRIKRCQSLS--KGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFVCMESIEAFGLDAKNLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRMRTR 706
            REGDPV  M+FI+RGR++   +     G    S+L+ G F G+ELL+W L       LP+S+ T   +  +EAF L ++ L+++   FR +  + +++ T R+YS  WRTWAA  IQ AWRRY  R +
Sbjct:  527 REGDPVDEMLFIIRGRLESVTTDGGRSGFFNRSLLKEGEFCGEELLTWALDPKSGVNLPSSTRTVKALTEVEAFALTSEELKFVASQFR-RLHSRQVQHTFRFYSHQWRTWAACFIQAAWRRYCKRKK 653          
The following BLAST results are available for this feature:
BLAST of CN192259 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
CNGC2_ARATH9.644e-7177.84Cyclic nucleotide-gated ion channel 2 OS=Arabidops... [more]
CNGC4_ARATH4.988e-4350.90Cyclic nucleotide-gated ion channel 4 OS=Arabidops... [more]
CNG14_ARATH2.328e-2437.75Probable cyclic nucleotide-gated ion channel 14 OS... [more]
CNG17_ARATH5.733e-2339.44Probable cyclic nucleotide-gated ion channel 17 OS... [more]
CNGC7_ARATH6.339e-2238.13Putative cyclic nucleotide-gated ion channel 7 OS=... [more]
CNGC9_ARATH1.412e-2139.44Putative cyclic nucleotide-gated ion channel 9 OS=... [more]
CNG18_ARATH1.844e-2136.50Putative cyclic nucleotide-gated ion channel 18 OS... [more]
CNGC6_ARATH3.146e-2141.41Probable cyclic nucleotide-gated ion channel 6 OS=... [more]
CNGC8_ARATH5.366e-2140.48Putative cyclic nucleotide-gated ion channel 8 OS=... [more]
CNGC5_ARATH9.153e-2140.63Probable cyclic nucleotide-gated ion channel 5 OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0006J16_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0006J16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN192259 ID=CN192259; Name=CN192259; organism=Citrus sinensis; type=EST; length=707bp
TTTTTTTTTTTTTTTTTGACTGAGAAATCTAGCTTGCTTTCTTATCATTC
ATCTGCTAGCAAAATCCTGAACTAGGAAAGAATTTCCCCCCCTTTTTCTT
TTATTTCAAATCCAATTGTCTAAATCGAGTGCAAGTTCGATGTTCCATGG
CTAAATTGCTACCCAAAGAAAAGAAAAGAAACTTTATTCATCAATGGAAG
AATTGCACGACACGGTGTGCTTATTCAAGGTGATCATGTGGTCTAATTGA
CATGAACATAGCAGCATATCTCATAAGTCTGTTGCTCTCATTGCCTTCTC
CATTTTCAGTTACAGAAATCACAGGACCTCTAGTCCTCATCCTGTATCTT
CTCCAAGCAAATTGAATATTCACAGCCGCCCATGTCCTCCAATTTGATGA
ATAATATCTCGCGGTTCTCTTCAGCCTTTCGTTGGCAAATTTGTACCGGA
AATGATCTGTGATGTATCGGAGATTCTTTGCATCTAACCCAAATGCTTCT
ATGGATTCCATACAAACAAATGTTGCTGATGATGCTGGCAGCCGATCGAT
AAACGGGCGGCGTAGGCACCAAGAAAGCAACTCATCACCCAGAAACCCTC
CTGGTTCAAGCACACTTGTTGCTACCATGCCTTTGCTTAGGCTTTGGCAA
CGTTTAATCCGTCCACGAACAATGAACACCATTCTTGGCACAGGATCCCC
TTCTCTG
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