CX302186

Overview
NameCX302186
Unique NameCX302186
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length697
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX302186 vs. ExPASy Swiss-Prot
Match: VP321_ARATH (Vacuolar protein sorting-associated protein 32 homolog 1 OS=Arabidopsis thaliana GN=VPS32.1 PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 4.712e-38
Identity = 79/83 (95.18%), Postives = 80/83 (96.39%), Query Frame = 1
Query:   25 KRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPIG 273
            KRLYEQQ+EQLGNFQLRIHDQMIMLEGAKATTETVDALRTGAS MKAMQKATNIDDVDKTMDEINEQTENMKQIQEALS P G
Sbjct:   67 KRLYEQQVEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASAMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSAPFG 149          
BLAST of CX302186 vs. ExPASy Swiss-Prot
Match: VP322_ARATH (Vacuolar protein sorting-associated protein 32 homolog 2 OS=Arabidopsis thaliana GN=VPS32.2 PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 3.989e-37
Identity = 77/83 (92.77%), Postives = 81/83 (97.59%), Query Frame = 1
Query:   25 KRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPIG 273
            KRLYE Q+EQLGNFQLRIHDQMIMLEGAKATTETVDALR+GAS MKAMQKATNIDDVDKTMDEINEQTENMKQIQEAL+TP+G
Sbjct:   66 KRLYEGQVEQLGNFQLRIHDQMIMLEGAKATTETVDALRSGASAMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALATPMG 148          
BLAST of CX302186 vs. ExPASy Swiss-Prot
Match: SNF7_KLULA (Vacuolar-sorting protein SNF7 OS=Kluyveromyces lactis GN=SNF7 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.760e-11
Identity = 34/82 (41.46%), Postives = 52/82 (63.41%), Query Frame = 1
Query:   25 KRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPI 270
            K+LYE Q+++L +    +  Q+  +E A    ET+ A++ GAS MK + K  ++D VD TMDEI EQ E  ++I EA+S P+
Sbjct:   67 KKLYESQLDKLQSQIDSLDQQLYSIENANLNLETLKAMKQGASAMKNIHKGLDLDKVDDTMDEIREQVELNQEISEAISKPL 148          
The following BLAST results are available for this feature:
BLAST of CX302186 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
VP321_ARATH4.712e-3895.18Vacuolar protein sorting-associated protein 32 hom... [more]
VP322_ARATH3.989e-3792.77Vacuolar protein sorting-associated protein 32 hom... [more]
SNF7_KLULA3.760e-1141.46Vacuolar-sorting protein SNF7 OS=Kluyveromyces lac... [more]
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Properties
Property NameValue
Genbank descriptionC08018A10SK PhyRootSw1 Citrus sinensis cDNA clone C08018A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX302186 ID=CX302186; Name=CX302186; organism=Citrus sinensis; type=EST; length=697bp
CTCGTGCCGAATTCGGCACGAGGGAAGAGGCTATACGAACAGCAAATAGA
GCAGCTTGGGAATTTCCAATTGCGCATTCATGATCAGATGATAATGCTAG
AAGGTGCTAAAGCCACAACTGAGACTGTAGATGCATTGAGGACGGGAGCA
TCGACAATGAAGGCTATGCAGAAAGCAACGAACATAGATGATGTGGATAA
GACCATGGATGAGATCAATGAGCAGACCGAGAACATGAAGCAGATTCAAG
AAGCATTATCAACTCCTATTGGTGCTGCTGCTGATTTCGATGAGGATGAA
TTGGAAGCAGAACTTGAAGAACTGGAAGGTGCTGAGTTGGAAGAGCAGCT
TCTACAGCCAGCTACAACAGCTCCTGCTGCTCCGGTTCAGGTCCCTGCTG
GCAGGCAACAAGCCCGTCCTGTTCCCCAAAAGCAGCGAACAGCTGAGGAA
GATGAGCTTGCTGCTTTACAAGCTGAGATGGCTCTTTAAGCAGGTTTTAC
CGCCATAATGAAGATATTATTTAAATAGCTGGCCGTATAATGTGGAGATT
TATGCCTACTTGGATTACCTTCAAGATTTCTGTGTGCATTCAATGAACAG
ACTGTATATAAAGTTTGCGTAAACTAGTCCTGTTTGAAATATGTATCCTG
TATTCTGTCTTATAGACCTTTTAATTGAGTTCATCATCTTTGATGTG
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