CX302184

Overview
NameCX302184
Unique NameCX302184
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length679
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX302184 vs. ExPASy Swiss-Prot
Match: RS15_PODAN (40S ribosomal protein S15 OS=Podospora anserina GN=RPS15 PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 8.936e-39
Identity = 77/150 (51.33%), Postives = 104/150 (69.33%), Query Frame = 3
Query:   24 EEIDIEAVAALRKKRQFKKFTYRGLELEKLLDMTQEEFANVVHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGPLDKPEPVKTHVRDMIILPELVGAVVAVYNGKVFNLVEIKAEMVGYYLGEFSITYRPVRHGRPGIGSTNSSRFIPLK 473
            +E + E  A L+KKR F+KF+YRG++L+ LLD+T +E  +VVH                              P +KP+ VKTH+RDMI++PE++G+VV +Y+GK FN VEIK EMVG+YLGEFSI+Y+PV+HGRPGIG+T+SSRFIPLK
Sbjct:    3 DEYNAEEAAELKKKRTFRKFSYRGVDLDALLDLTSDELRDVVHARARRKINRGLKRRPMGLIKKLRKAKQEAKPNEKPDLVKTHLRDMIVVPEMIGSVVGIYSGKEFNQVEIKPEMVGHYLGEFSISYKPVKHGRPGIGATHSSRFIPLK 152          
BLAST of CX302184 vs. ExPASy Swiss-Prot
Match: RS15_CAEEL (40S ribosomal protein S15 OS=Caenorhabditis elegans GN=rps-15 PE=1 SV=3)

HSP 1 Score: 158.303 bits (399), Expect = 3.396e-38
Identity = 76/143 (53.15%), Postives = 100/143 (69.93%), Query Frame = 3
Query:   45 VAALRKKRQFKKFTYRGLELEKLLDMTQEEFANVVHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGPLDKPEPVKTHVRDMIILPELVGAVVAVYNGKVFNLVEIKAEMVGYYLGEFSITYRPVRHGRPGIGSTNSSRFIPLK 473
            +A L+KKR F+KF YRG++L++LLDM++E+F  ++                              G L+KP  VKTH+RDMIILPELVG V+ +YNGKVFN  EIK EM+G+YLGEF+I+Y+PV+HGRPGIG+T+SSRFIPLK
Sbjct:    9 LAELKKKRTFRKFMYRGVDLDQLLDMSREQFTKLLPCRMRRRLDRGLKRKHLALIAKVQKAKKAAGVLEKPATVKTHLRDMIILPELVGGVIGIYNGKVFNQTEIKPEMIGFYLGEFAISYKPVKHGRPGIGATHSSRFIPLK 151          
BLAST of CX302184 vs. ExPASy Swiss-Prot
Match: RS15_RAT (40S ribosomal protein S15 OS=Rattus norvegicus GN=Rps15 PE=1 SV=2)

HSP 1 Score: 156.762 bits (395), Expect = 9.880e-38
Identity = 76/139 (54.68%), Postives = 97/139 (69.78%), Query Frame = 3
Query:   57 RKKRQFKKFTYRGLELEKLLDMTQEEFANVVHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGPLDKPEPVKTHVRDMIILPELVGAVVAVYNGKVFNLVEIKAEMVGYYLGEFSITYRPVRHGRPGIGSTNSSRFIPLK 473
            +KKR F+KFTYRG++L++LLDM+ E+   +                                P++KPE VKTH+RDMIILPE+VG++V VYNGK FN VEIK EM+G+YLGEFSITY+PV+HGRPGIG+T+SSRFIPLK
Sbjct:    7 KKKRTFRKFTYRGVDLDQLLDMSYEQLMQLYSARQRRRLNRGLRRKQHSLLKRLRKAKKEAPPMEKPEVVKTHLRDMIILPEMVGSMVGVYNGKTFNQVEIKPEMIGHYLGEFSITYKPVKHGRPGIGATHSSRFIPLK 145          
BLAST of CX302184 vs. ExPASy Swiss-Prot
Match: RS15_PONAB (40S ribosomal protein S15 OS=Pongo abelii GN=RPS15 PE=2 SV=3)

HSP 1 Score: 156.762 bits (395), Expect = 9.880e-38
Identity = 76/139 (54.68%), Postives = 97/139 (69.78%), Query Frame = 3
Query:   57 RKKRQFKKFTYRGLELEKLLDMTQEEFANVVHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGPLDKPEPVKTHVRDMIILPELVGAVVAVYNGKVFNLVEIKAEMVGYYLGEFSITYRPVRHGRPGIGSTNSSRFIPLK 473
            +KKR F+KFTYRG++L++LLDM+ E+   +                                P++KPE VKTH+RDMIILPE+VG++V VYNGK FN VEIK EM+G+YLGEFSITY+PV+HGRPGIG+T+SSRFIPLK
Sbjct:    7 KKKRTFRKFTYRGVDLDQLLDMSYEQLMQLYSARQRRRLNRGLRRKQHSLLKRLRKAKKEAPPMEKPEVVKTHLRDMIILPEMVGSMVGVYNGKTFNQVEIKPEMIGHYLGEFSITYKPVKHGRPGIGATHSSRFIPLK 145          
BLAST of CX302184 vs. ExPASy Swiss-Prot
Match: RS15_PIG (40S ribosomal protein S15 OS=Sus scrofa GN=RPS15 PE=2 SV=2)

HSP 1 Score: 156.762 bits (395), Expect = 9.880e-38
Identity = 76/139 (54.68%), Postives = 97/139 (69.78%), Query Frame = 3
Query:   57 RKKRQFKKFTYRGLELEKLLDMTQEEFANVVHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGPLDKPEPVKTHVRDMIILPELVGAVVAVYNGKVFNLVEIKAEMVGYYLGEFSITYRPVRHGRPGIGSTNSSRFIPLK 473
            +KKR F+KFTYRG++L++LLDM+ E+   +                                P++KPE VKTH+RDMIILPE+VG++V VYNGK FN VEIK EM+G+YLGEFSITY+PV+HGRPGIG+T+SSRFIPLK
Sbjct:    7 KKKRTFRKFTYRGVDLDQLLDMSYEQLMQLYSARQRRRLNRGLRRKQHSLLKRLRKAKKEAPPMEKPEVVKTHLRDMIILPEMVGSMVGVYNGKTFNQVEIKPEMIGHYLGEFSITYKPVKHGRPGIGATHSSRFIPLK 145          
BLAST of CX302184 vs. ExPASy Swiss-Prot
Match: RS15_MOUSE (40S ribosomal protein S15 OS=Mus musculus GN=Rps15 PE=2 SV=2)

HSP 1 Score: 156.762 bits (395), Expect = 9.880e-38
Identity = 76/139 (54.68%), Postives = 97/139 (69.78%), Query Frame = 3
Query:   57 RKKRQFKKFTYRGLELEKLLDMTQEEFANVVHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGPLDKPEPVKTHVRDMIILPELVGAVVAVYNGKVFNLVEIKAEMVGYYLGEFSITYRPVRHGRPGIGSTNSSRFIPLK 473
            +KKR F+KFTYRG++L++LLDM+ E+   +                                P++KPE VKTH+RDMIILPE+VG++V VYNGK FN VEIK EM+G+YLGEFSITY+PV+HGRPGIG+T+SSRFIPLK
Sbjct:    7 KKKRTFRKFTYRGVDLDQLLDMSYEQLMQLYSARQRRRLNRGLRRKQHSLLKRLRKAKKEAPPMEKPEVVKTHLRDMIILPEMVGSMVGVYNGKTFNQVEIKPEMIGHYLGEFSITYKPVKHGRPGIGATHSSRFIPLK 145          
BLAST of CX302184 vs. ExPASy Swiss-Prot
Match: RS15_MESAU (40S ribosomal protein S15 OS=Mesocricetus auratus GN=RPS15 PE=2 SV=2)

HSP 1 Score: 156.762 bits (395), Expect = 9.880e-38
Identity = 76/139 (54.68%), Postives = 97/139 (69.78%), Query Frame = 3
Query:   57 RKKRQFKKFTYRGLELEKLLDMTQEEFANVVHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGPLDKPEPVKTHVRDMIILPELVGAVVAVYNGKVFNLVEIKAEMVGYYLGEFSITYRPVRHGRPGIGSTNSSRFIPLK 473
            +KKR F+KFTYRG++L++LLDM+ E+   +                                P++KPE VKTH+RDMIILPE+VG++V VYNGK FN VEIK EM+G+YLGEFSITY+PV+HGRPGIG+T+SSRFIPLK
Sbjct:    7 KKKRTFRKFTYRGVDLDQLLDMSYEQLMQLYSARQRRRLNRGLRRKQHSLLKRLRKAKKEAPPMEKPEVVKTHLRDMIILPEMVGSMVGVYNGKTFNQVEIKPEMIGHYLGEFSITYKPVKHGRPGIGATHSSRFIPLK 145          
BLAST of CX302184 vs. ExPASy Swiss-Prot
Match: RS15_HUMAN (40S ribosomal protein S15 OS=Homo sapiens GN=RPS15 PE=1 SV=2)

HSP 1 Score: 156.762 bits (395), Expect = 9.880e-38
Identity = 76/139 (54.68%), Postives = 97/139 (69.78%), Query Frame = 3
Query:   57 RKKRQFKKFTYRGLELEKLLDMTQEEFANVVHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGPLDKPEPVKTHVRDMIILPELVGAVVAVYNGKVFNLVEIKAEMVGYYLGEFSITYRPVRHGRPGIGSTNSSRFIPLK 473
            +KKR F+KFTYRG++L++LLDM+ E+   +                                P++KPE VKTH+RDMIILPE+VG++V VYNGK FN VEIK EM+G+YLGEFSITY+PV+HGRPGIG+T+SSRFIPLK
Sbjct:    7 KKKRTFRKFTYRGVDLDQLLDMSYEQLMQLYSARQRRRLNRGLRRKQHSLLKRLRKAKKEAPPMEKPEVVKTHLRDMIILPEMVGSMVGVYNGKTFNQVEIKPEMIGHYLGEFSITYKPVKHGRPGIGATHSSRFIPLK 145          
BLAST of CX302184 vs. ExPASy Swiss-Prot
Match: RS15_CHICK (40S ribosomal protein S15 OS=Gallus gallus GN=RPS15 PE=2 SV=2)

HSP 1 Score: 156.762 bits (395), Expect = 9.880e-38
Identity = 76/139 (54.68%), Postives = 97/139 (69.78%), Query Frame = 3
Query:   57 RKKRQFKKFTYRGLELEKLLDMTQEEFANVVHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGPLDKPEPVKTHVRDMIILPELVGAVVAVYNGKVFNLVEIKAEMVGYYLGEFSITYRPVRHGRPGIGSTNSSRFIPLK 473
            +KKR F+KFTYRG++L++LLDM+ E+   +                                P++KPE VKTH+RDMIILPE+VG++V VYNGK FN VEIK EM+G+YLGEFSITY+PV+HGRPGIG+T+SSRFIPLK
Sbjct:    7 KKKRTFRKFTYRGVDLDQLLDMSYEQLMQLYSARQRRRLNRGLRRKQHSLLKRLRKAKKEAPPMEKPEVVKTHLRDMIILPEMVGSMVGVYNGKTFNQVEIKPEMIGHYLGEFSITYKPVKHGRPGIGATHSSRFIPLK 145          
BLAST of CX302184 vs. ExPASy Swiss-Prot
Match: RS15_BOVIN (40S ribosomal protein S15 OS=Bos taurus GN=RPS15 PE=2 SV=3)

HSP 1 Score: 156.762 bits (395), Expect = 9.880e-38
Identity = 76/139 (54.68%), Postives = 97/139 (69.78%), Query Frame = 3
Query:   57 RKKRQFKKFTYRGLELEKLLDMTQEEFANVVHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGPLDKPEPVKTHVRDMIILPELVGAVVAVYNGKVFNLVEIKAEMVGYYLGEFSITYRPVRHGRPGIGSTNSSRFIPLK 473
            +KKR F+KFTYRG++L++LLDM+ E+   +                                P++KPE VKTH+RDMIILPE+VG++V VYNGK FN VEIK EM+G+YLGEFSITY+PV+HGRPGIG+T+SSRFIPLK
Sbjct:    7 KKKRTFRKFTYRGVDLDQLLDMSYEQLMQLYSARQRRRLNRGLRRKQHSLLKRLRKAKKDAPPMEKPEVVKTHLRDMIILPEMVGSMVGVYNGKTFNQVEIKPEMIGHYLGEFSITYKPVKHGRPGIGATHSSRFIPLK 145          
The following BLAST results are available for this feature:
BLAST of CX302184 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
RS15_PODAN8.936e-3951.3340S ribosomal protein S15 OS=Podospora anserina GN... [more]
RS15_CAEEL3.396e-3853.1540S ribosomal protein S15 OS=Caenorhabditis elegan... [more]
RS15_RAT9.880e-3854.6840S ribosomal protein S15 OS=Rattus norvegicus GN=... [more]
RS15_PONAB9.880e-3854.6840S ribosomal protein S15 OS=Pongo abelii GN=RPS15... [more]
RS15_PIG9.880e-3854.6840S ribosomal protein S15 OS=Sus scrofa GN=RPS15 P... [more]
RS15_MOUSE9.880e-3854.6840S ribosomal protein S15 OS=Mus musculus GN=Rps15... [more]
RS15_MESAU9.880e-3854.6840S ribosomal protein S15 OS=Mesocricetus auratus ... [more]
RS15_HUMAN9.880e-3854.6840S ribosomal protein S15 OS=Homo sapiens GN=RPS15... [more]
RS15_CHICK9.880e-3854.6840S ribosomal protein S15 OS=Gallus gallus GN=RPS1... [more]
RS15_BOVIN9.880e-3854.6840S ribosomal protein S15 OS=Bos taurus GN=RPS15 P... [more]

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Properties
Property NameValue
Genbank descriptionC08018A08SK PhyRootSw1 Citrus sinensis cDNA clone C08018A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX302184 ID=CX302184; Name=CX302184; organism=Citrus sinensis; type=EST; length=679bp
GGAATTCGGCACGAGGGTCAACTGAAGAAATTGATATTGAAGCTGTTGCT
GCTCTTCGTAAGAAGAGACAATTCAAGAAGTTCACCTACCGTGGACTTGA
ATTGGAAAAGTTATTGGACATGACTCAGGAGGAATTCGCCAATGTTGTCC
ATGCTCGTGCTCGCAGGAGATTACAACGTGGTTTGAAGAGAAAGCATTTA
GCTTTGAAGAAGAAGCTTCTTAAGGCCAAGGCTGCTGCTGGTCCTTTGGA
CAAGCCAGAGCCTGTCAAGACTCATGTTCGTGACATGATCATCTTACCTG
AGTTGGTTGGTGCTGTTGTCGCTGTCTACAACGGTAAAGTGTTTAACTTA
GTCGAAATCAAGGCTGAAATGGTCGGATACTACTTGGGTGAGTTCTCCAT
CACTTACCGCCCAGTTCGTCACGGCCGTCCTGGTATTGGTTCCACCAACT
CTTCCAGATTCATCCCTCTCAAGTAAACGGATTGATGATCGCCTTTTCAT
TCTTCACTGCCCTTCCACCTGCCTTTCTCACCTCCTATCCGCTACTTCAC
ACACGTCGTCAGCCAGCATCTCTACACACGAGAGCATAATAATAGAATCG
GCAGANACAACACATCGAATGCCTGAGCTTCTCTTGTAAGTCTAAAATAA
ACCATTCATAAAAAAAAAAAAAAAAAAAA
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