CX302178

Overview
NameCX302178
Unique NameCX302178
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length695
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX302178 vs. ExPASy Swiss-Prot
Match: KC1D_ARATH (Casein kinase I isoform delta-like OS=Arabidopsis thaliana GN=At4g26100 PE=2 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 1.556e-33
Identity = 64/87 (73.56%), Postives = 78/87 (89.66%), Query Frame = 2
Query:  434 MDHVIGGKFKLGRKIGSGSFGELYLGVNVQTGEEVAVKLESVKTKHPQLHYESKLYMLLQGGTGVPHLXWFGVEGEYNVMVIDLLGP 694
            M+  +G KF+LGRKIGSGSFGE+YLG N+ T EE+A+KLE+VKTKHPQL YESKLY +LQGGTGVP++ WFGVEG+YNV+V+DLLGP
Sbjct:    1 MEPRVGNKFRLGRKIGSGSFGEIYLGTNIHTNEELAIKLENVKTKHPQLLYESKLYRILQGGTGVPNVKWFGVEGDYNVLVMDLLGP 87          
BLAST of CX302178 vs. ExPASy Swiss-Prot
Match: KC1_TOXGO (Casein kinase I OS=Toxoplasma gondii PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.004e-32
Identity = 60/87 (68.97%), Postives = 77/87 (88.51%), Query Frame = 2
Query:  434 MDHVIGGKFKLGRKIGSGSFGELYLGVNVQTGEEVAVKLESVKTKHPQLHYESKLYMLLQGGTGVPHLXWFGVEGEYNVMVIDLLGP 694
            M+  +GGK++LGRKIGSGSFG++Y+G N+ TG+EVA+KLES+K+KHPQL YESKLY LL GG G+P + W+G+EG+YNVMVIDLLGP
Sbjct:    1 MEVRVGGKYRLGRKIGSGSFGDIYIGANILTGDEVAIKLESIKSKHPQLLYESKLYKLLAGGIGIPMVHWYGIEGDYNVMVIDLLGP 87          
BLAST of CX302178 vs. ExPASy Swiss-Prot
Match: KC1_EIMTE (Casein kinase I OS=Eimeria tenella PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.535e-32
Identity = 59/87 (67.82%), Postives = 77/87 (88.51%), Query Frame = 2
Query:  434 MDHVIGGKFKLGRKIGSGSFGELYLGVNVQTGEEVAVKLESVKTKHPQLHYESKLYMLLQGGTGVPHLXWFGVEGEYNVMVIDLLGP 694
            MD  +GGK++LGRKIGSGSFG++YLG N+ TG+EVA+KLESV+++HPQL YESKLY +L GG G+P L W+G+EG+YNVM+I+LLGP
Sbjct:    1 MDVRVGGKYRLGRKIGSGSFGDIYLGTNISTGDEVAIKLESVRSRHPQLIYESKLYKILTGGIGIPTLYWYGIEGDYNVMIIELLGP 87          
BLAST of CX302178 vs. ExPASy Swiss-Prot
Match: KC1E_CHICK (Casein kinase I isoform epsilon OS=Gallus gallus GN=CSNK1E PE=2 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 9.437e-31
Identity = 58/87 (66.67%), Postives = 73/87 (83.91%), Query Frame = 2
Query:  434 MDHVIGGKFKLGRKIGSGSFGELYLGVNVQTGEEVAVKLESVKTKHPQLHYESKLYMLLQGGTGVPHLXWFGVEGEYNVMVIDLLGP 694
            M+  +G K++LGRKIGSGSFG++YLG N+ TGEEVA+KLE VKTKHPQLH ESK Y ++QGG G+P + W G EG+YNVMV++LLGP
Sbjct:    1 MELRVGNKYRLGRKIGSGSFGDIYLGANIATGEEVAIKLECVKTKHPQLHIESKFYKMMQGGVGIPSIKWCGAEGDYNVMVMELLGP 87          
BLAST of CX302178 vs. ExPASy Swiss-Prot
Match: KC1E_MOUSE (Casein kinase I isoform epsilon OS=Mus musculus GN=Csnk1e PE=1 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 2.746e-30
Identity = 57/87 (65.52%), Postives = 73/87 (83.91%), Query Frame = 2
Query:  434 MDHVIGGKFKLGRKIGSGSFGELYLGVNVQTGEEVAVKLESVKTKHPQLHYESKLYMLLQGGTGVPHLXWFGVEGEYNVMVIDLLGP 694
            M+  +G K++LGRKIGSGSFG++YLG N+ +GEEVA+KLE VKTKHPQLH ESK Y ++QGG G+P + W G EG+YNVMV++LLGP
Sbjct:    1 MELRVGNKYRLGRKIGSGSFGDIYLGANIASGEEVAIKLECVKTKHPQLHIESKFYKMMQGGVGIPSIKWCGAEGDYNVMVMELLGP 87          
BLAST of CX302178 vs. ExPASy Swiss-Prot
Match: KC1E_HUMAN (Casein kinase I isoform epsilon OS=Homo sapiens GN=CSNK1E PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.746e-30
Identity = 57/87 (65.52%), Postives = 73/87 (83.91%), Query Frame = 2
Query:  434 MDHVIGGKFKLGRKIGSGSFGELYLGVNVQTGEEVAVKLESVKTKHPQLHYESKLYMLLQGGTGVPHLXWFGVEGEYNVMVIDLLGP 694
            M+  +G K++LGRKIGSGSFG++YLG N+ +GEEVA+KLE VKTKHPQLH ESK Y ++QGG G+P + W G EG+YNVMV++LLGP
Sbjct:    1 MELRVGNKYRLGRKIGSGSFGDIYLGANIASGEEVAIKLECVKTKHPQLHIESKFYKMMQGGVGIPSIKWCGAEGDYNVMVMELLGP 87          
BLAST of CX302178 vs. ExPASy Swiss-Prot
Match: KC1A_XENLA (Casein kinase I isoform alpha OS=Xenopus laevis GN=csnk1a1 PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.586e-30
Identity = 57/86 (66.28%), Postives = 73/86 (84.88%), Query Frame = 2
Query:  437 DHVIGGKFKLGRKIGSGSFGELYLGVNVQTGEEVAVKLESVKTKHPQLHYESKLYMLLQGGTGVPHLXWFGVEGEYNVMVIDLLGP 694
            + ++GGK+KL RKIGSGSFG++YL +N+  GEEVAVKLES K +HPQL YESKLY +LQGG G+PH+ W+G E +YNV+V+DLLGP
Sbjct:   10 EFIVGGKYKLVRKIGSGSFGDIYLAINITNGEEVAVKLESQKARHPQLLYESKLYKILQGGVGIPHIRWYGQEKDYNVLVMDLLGP 95          
BLAST of CX302178 vs. ExPASy Swiss-Prot
Match: KC1A_SHEEP (Casein kinase I isoform alpha OS=Ovis aries GN=CSNK1A1 PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.586e-30
Identity = 57/86 (66.28%), Postives = 73/86 (84.88%), Query Frame = 2
Query:  437 DHVIGGKFKLGRKIGSGSFGELYLGVNVQTGEEVAVKLESVKTKHPQLHYESKLYMLLQGGTGVPHLXWFGVEGEYNVMVIDLLGP 694
            + ++GGK+KL RKIGSGSFG++YL +N+  GEEVAVKLES K +HPQL YESKLY +LQGG G+PH+ W+G E +YNV+V+DLLGP
Sbjct:   10 EFIVGGKYKLVRKIGSGSFGDIYLAINITNGEEVAVKLESQKARHPQLLYESKLYKILQGGVGIPHIRWYGQEKDYNVLVMDLLGP 95          
BLAST of CX302178 vs. ExPASy Swiss-Prot
Match: KC1A_RABIT (Casein kinase I isoform alpha OS=Oryctolagus cuniculus GN=CSNK1A1 PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.586e-30
Identity = 57/86 (66.28%), Postives = 73/86 (84.88%), Query Frame = 2
Query:  437 DHVIGGKFKLGRKIGSGSFGELYLGVNVQTGEEVAVKLESVKTKHPQLHYESKLYMLLQGGTGVPHLXWFGVEGEYNVMVIDLLGP 694
            + ++GGK+KL RKIGSGSFG++YL +N+  GEEVAVKLES K +HPQL YESKLY +LQGG G+PH+ W+G E +YNV+V+DLLGP
Sbjct:   10 EFIVGGKYKLVRKIGSGSFGDIYLAINITNGEEVAVKLESQKARHPQLLYESKLYKILQGGVGIPHIRWYGQEKDYNVLVMDLLGP 95          
BLAST of CX302178 vs. ExPASy Swiss-Prot
Match: KC1A_MOUSE (Casein kinase I isoform alpha OS=Mus musculus GN=Csnk1a1 PE=2 SV=2)

HSP 1 Score: 131.724 bits (330), Expect = 3.586e-30
Identity = 57/86 (66.28%), Postives = 73/86 (84.88%), Query Frame = 2
Query:  437 DHVIGGKFKLGRKIGSGSFGELYLGVNVQTGEEVAVKLESVKTKHPQLHYESKLYMLLQGGTGVPHLXWFGVEGEYNVMVIDLLGP 694
            + ++GGK+KL RKIGSGSFG++YL +N+  GEEVAVKLES K +HPQL YESKLY +LQGG G+PH+ W+G E +YNV+V+DLLGP
Sbjct:   10 EFIVGGKYKLVRKIGSGSFGDIYLAINITNGEEVAVKLESQKARHPQLLYESKLYKILQGGVGIPHIRWYGQEKDYNVLVMDLLGP 95          
The following BLAST results are available for this feature:
BLAST of CX302178 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
KC1D_ARATH1.556e-3373.56Casein kinase I isoform delta-like OS=Arabidopsis ... [more]
KC1_TOXGO5.004e-3268.97Casein kinase I OS=Toxoplasma gondii PE=2 SV=1[more]
KC1_EIMTE6.535e-3267.82Casein kinase I OS=Eimeria tenella PE=2 SV=1[more]
KC1E_CHICK9.437e-3166.67Casein kinase I isoform epsilon OS=Gallus gallus G... [more]
KC1E_MOUSE2.746e-3065.52Casein kinase I isoform epsilon OS=Mus musculus GN... [more]
KC1E_HUMAN2.746e-3065.52Casein kinase I isoform epsilon OS=Homo sapiens GN... [more]
KC1A_XENLA3.586e-3066.28Casein kinase I isoform alpha OS=Xenopus laevis GN... [more]
KC1A_SHEEP3.586e-3066.28Casein kinase I isoform alpha OS=Ovis aries GN=CSN... [more]
KC1A_RABIT3.586e-3066.28Casein kinase I isoform alpha OS=Oryctolagus cunic... [more]
KC1A_MOUSE3.586e-3066.28Casein kinase I isoform alpha OS=Mus musculus GN=C... [more]

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Properties
Property NameValue
Genbank descriptionC08018A02SK PhyRootSw1 Citrus sinensis cDNA clone C08018A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX302178 ID=CX302178; Name=CX302178; organism=Citrus sinensis; type=EST; length=695bp
GAATTCGGCACGAGGTTTCGCTCTGTATTTTTCGCTCTGAAAGAATTAAT
TTAAGGAAAAAAAAAACACCATTTCTAACCATTATTTTCTCTTCAAAATC
CCACTTTTTTCTCTTCAAAATTTTCCCAGAAAATGCATTATTGTGATCGC
TCAACAATATTAACAAATGGGTATTGCTTGGTTTTTTAAGCAAACTCATG
TTTTGTTTTGTATAGTAACAGATAGATTGTAAAGGGTAATTTTTATTTTA
AGTTGCATTGTTTTTTTGGTTTATCAATAAATTTGATGGATCTAAAGATT
CTCTGACAAGGGAATCTTTTGTGGGTAGTTTCATGTTTGGTGAACAAATT
TGATTGTAATATAATTAATAGTGGAAAGAAAAAAAGTCCAAATTTGTTGT
ATTAATTTTTTTGTTCGGGTCAAAAGTAGATCCATGGATCATGTAATTGG
AGGCAAGTTCAAGCTGGGGAGGAAGATCGGGAGTGGATCGTTTGGTGAGC
TTTATTTAGGGGTTAACGTGCAAACTGGCGAGGAAGTTGCTGTGAAGCTG
GAATCTGTGAAGACGAAGCATCCTCAGCTTCACTATGAATCAAAATTGTA
CATGCTTCTTCAAGGAGGAACGGGTGTTCCCCATCTCANATGGTTTGGAG
TGGAGGGTGAATACAATGTCATGGTTATTGATCTTCTTGGACCAA
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