CN192238

Overview
NameCN192238
Unique NameCN192238
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length698
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig403 contig Csv1_Contig403:293..990. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN192238 vs. ExPASy Swiss-Prot
Match: AB17I_ARATH (ABC transporter I family member 17 OS=Arabidopsis thaliana GN=ABCI17 PE=2 SV=1)

HSP 1 Score: 268.855 bits (686), Expect = 1.895e-71
Identity = 134/182 (73.63%), Postives = 156/182 (85.71%), Query Frame = -3
Query:  151 PPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVADNIRYGPQLRGKKLTENEVYKXXXXXXXXXXXXSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPMALRFLQLS 696
            PP  TVFLDG DIT++DV++LRR+VGMLFQ+P LF+GTVADN+RYGP LRG+KL++ EVYK             KTGAE+SVGQAQRVALARTLANEPEVLLLDEPTSALDPIST+NIEDV+VKLKK+ G+T V+VSHSIKQIQ++AD+VCL+V+GEIVEVLKP  LS A HPMA RFLQLS
Sbjct:   81 PPESTVFLDGEDITNVDVIALRRRVGMLFQLPVLFQGTVADNVRYGPNLRGEKLSDEEVYKLLSLADLDASFAKKTGAELSVGQAQRVALARTLANEPEVLLLDEPTSALDPISTENIEDVIVKLKKQRGITTVIVSHSIKQIQKVADIVCLVVDGEIVEVLKPSELSHATHPMAQRFLQLS 262          
BLAST of CN192238 vs. ExPASy Swiss-Prot
Match: PSTB2_THETN (Phosphate import ATP-binding protein pstB 2 OS=Thermoanaerobacter tengcongensis GN=pstB2 PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 7.785e-33
Identity = 79/165 (47.88%), Postives = 110/165 (66.67%), Query Frame = -3
Query:  217 SGTVFLDGRDI-TDLDVLSLRRKVGMLFQIPALFEGTVADNIRYGPQLRG--KKLTENEVY----KXXXXXXXXXXXXSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVE 690
            SGTV LDG+DI  ++DV+ LR+KVGM+FQ P  F  TV DN+ YGP++ G   K T NE+     K              +   +S GQ QR+ +ARTLA EPEV+L+DEPTSALDPIST  IE+++ +LKKK+  TI++V+H+++Q  R++D     +NGE+VE
Sbjct:   62 SGTVLLDGKDIYKEVDVIELRKKVGMVFQKPNPFPMTVYDNVAYGPRIHGIRDKRTLNEIVEKSLKAAALWDEVKDRLHHSALSLSGGQQQRLCIARTLAVEPEVILMDEPTSALDPISTMKIEELIEELKKKY--TIIIVTHNMQQAGRVSDYTAFFLNGELVE 224          
BLAST of CN192238 vs. ExPASy Swiss-Prot
Match: PSTB1_THETN (Phosphate import ATP-binding protein pstB 1 OS=Thermoanaerobacter tengcongensis GN=pstB1 PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.328e-32
Identity = 74/163 (45.40%), Postives = 105/163 (64.42%), Query Frame = -3
Query:  208 PPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVADNIRYGPQLRGKKLTENEVYKXXXXXXXXXXXXSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLK 696
            P  G +F++G +  ++DV+ LRRK+GM+FQ P LFEGTV +NI  GP LRG+K  +   Y              K    +S G+AQRV++AR LAN PEVLLLDEPTS+LDP ST  IE+ L+K   + G+ +++V+H+++Q +RI D    L  GE++E  K
Sbjct:   54 PTEGAIFINGVEYKNIDVILLRRKIGMVFQRPFLFEGTVKENIELGPSLRGEKNIDALFY--LEAVGLSKDYLFKDVNNLSGGEAQRVSIARALANSPEVLLLDEPTSSLDPTSTSIIEE-LIKRLNREGIMVILVTHNMEQAKRIGDYTLFLYKGELIEARK 213          
BLAST of CN192238 vs. ExPASy Swiss-Prot
Match: PSTB_METBU (Phosphate import ATP-binding protein pstB OS=Methanococcoides burtonii (strain DSM 6242) GN=pstB PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.344e-29
Identity = 74/164 (45.12%), Postives = 106/164 (64.63%), Query Frame = -3
Query:  217 GTVFLDGRDI--TDLDVLSLRRKVGMLFQIPALFEGTVADNIRYGPQLRG--KKLTENEVYKXXXXXXXXXXXXSKTGAE---ISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVE 687
            G V +DG +I   D+DV+ LR+ VGM+FQ P  F  ++ DNI YGP++ G  K  TE  V+K             + G +   +S GQ QR+ +ARTLA +PE+LL DEP SALDPIST  IED++++LKK +  TIV+V+H+++Q  RI+D     ++GEI+E
Sbjct:   69 GEVLVDGENIYDKDVDVVDLRKNVGMVFQKPNPFPMSIYDNIAYGPKIHGCSKSETEERVHKALDDAALMGEVQDRLGDQAFSLSGGQQQRLCIARTLAVKPEILLFDEPCSALDPISTSKIEDLILELKKDY--TIVIVTHNMQQAARISDHTAFFLHGEIIE 230          
BLAST of CN192238 vs. ExPASy Swiss-Prot
Match: PSTB_THEMA (Phosphate import ATP-binding protein pstB OS=Thermotoga maritima GN=pstB PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.385e-28
Identity = 71/165 (43.03%), Postives = 101/165 (61.21%), Query Frame = -3
Query:  217 GTVFLDGRDITD--LDVLSLRRKVGMLFQIPALFEGTVADNIRYGPQLRGKKLTE------NEVYKXXXXXXXXXXXXSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVE 687
            G ++  G+DI D  LDV   R++VGM+FQ P  F  ++ DN+ +GP++ G K          E  K            +K+G  +S GQ QR+ +AR LA EPEV+LLDEPTSALDPI+TQ IE +L +L + +  TIV+V+H+I Q  RIAD +  +  GE++E
Sbjct:   64 GKIYFKGQDIYDPQLDVTEYRKRVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHILDRIVEESLKKAALWDEVKSELNKSGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENY--TIVIVTHNIGQAIRIADYIAFMYRGELIE 226          
BLAST of CN192238 vs. ExPASy Swiss-Prot
Match: PSTB_CARHZ (Phosphate import ATP-binding protein pstB OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=pstB PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.421e-28
Identity = 71/172 (41.28%), Postives = 109/172 (63.37%), Query Frame = -3
Query:  196 GTVFLDGRDI--TDLDVLSLRRKVGMLFQIPALFEGTVADNIRYGPQLRG----KKLTE--NEVYKXXXXXXXXXXXXSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLL 687
            G++  DG DI   + DV+ LR++VGM+FQ P  F  +V +N+ Y P++ G    +KL E   +  +             K    +S GQ QR+ +AR LA EPEVLL+DEPTSALDPIST  IE+++ +LKKK+  TIV+V+H+++Q  RI+D     +NGE++E+ + +++
Sbjct:   66 GSILFDGVDIYKENFDVVELRKRVGMVFQSPNPFPKSVYENVAYAPKIHGLKDKRKLDEIVEKSLRGAALWDEVKDRLHKPATGLSGGQQQRLCIARALAIEPEVLLMDEPTSALDPISTMRIEELIQELKKKY--TIVIVTHNMQQAARISDRTAFFLNGELIEMDRTEVI 235          
BLAST of CN192238 vs. ExPASy Swiss-Prot
Match: PSTB_CLOPS (Phosphate import ATP-binding protein pstB OS=Clostridium perfringens (strain SM101 / Type A) GN=pstB PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 9.848e-28
Identity = 69/164 (42.07%), Postives = 105/164 (64.02%), Query Frame = -3
Query:  217 GTVFLDGRDI-TDLDVLSLRRKVGMLFQIPALFEGTVADNIRYGPQLRG---KKLTEN---EVYKXXXXXXXXXXXXSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVE 687
            G + +DG+DI  D DV++LR KVGM+FQ P LF  ++ DN+ YGP++ G   KK+ +    E  +              +   +S GQ QR+ +AR +A  PE++L+DEPTSALDPIST  +E+++ KL+ K+  TIV+V+H+++Q  RI+D     +NGE+VE
Sbjct:   67 GEIQVDGKDIYKDDDVIALRTKVGMVFQKPNLFPMSIYDNVAYGPRVHGIKDKKVLDKIVEESLRDAAIWDEVKNRLKSSALGLSGGQQQRICIARAIAMNPEIILMDEPTSALDPISTLKVEELIRKLEDKY--TIVIVTHNMQQAARISDKTAFFLNGELVE 228          
BLAST of CN192238 vs. ExPASy Swiss-Prot
Match: PSTB_CLOPE (Phosphate import ATP-binding protein pstB OS=Clostridium perfringens GN=pstB PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 9.848e-28
Identity = 69/164 (42.07%), Postives = 105/164 (64.02%), Query Frame = -3
Query:  217 GTVFLDGRDI-TDLDVLSLRRKVGMLFQIPALFEGTVADNIRYGPQLRG---KKLTEN---EVYKXXXXXXXXXXXXSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVE 687
            G + +DG+DI  D DV++LR KVGM+FQ P LF  ++ DN+ YGP++ G   KK+ +    E  +              +   +S GQ QR+ +AR +A  PE++L+DEPTSALDPIST  +E+++ KL+ K+  TIV+V+H+++Q  RI+D     +NGE+VE
Sbjct:   67 GEIQVDGKDIYKDDDVIALRTKVGMVFQKPNLFPMSIYDNVAYGPRVHGIKDKKVLDKIVEESLRDAAIWDEVKNRLKSSALGLSGGQQQRICIARAIAMNPEIILMDEPTSALDPISTLKVEELIRKLEDKY--TIVIVTHNMQQAARISDKTAFFLNGELVE 228          
BLAST of CN192238 vs. ExPASy Swiss-Prot
Match: PSTB_CLOP1 (Phosphate import ATP-binding protein pstB OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=pstB PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 9.848e-28
Identity = 69/164 (42.07%), Postives = 105/164 (64.02%), Query Frame = -3
Query:  217 GTVFLDGRDI-TDLDVLSLRRKVGMLFQIPALFEGTVADNIRYGPQLRG---KKLTEN---EVYKXXXXXXXXXXXXSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVE 687
            G + +DG+DI  D DV++LR KVGM+FQ P LF  ++ DN+ YGP++ G   KK+ +    E  +              +   +S GQ QR+ +AR +A  PE++L+DEPTSALDPIST  +E+++ KL+ K+  TIV+V+H+++Q  RI+D     +NGE+VE
Sbjct:   67 GEIQVDGKDIYKDDDVIALRTKVGMVFQKPNLFPMSIYDNVAYGPRVHGIKDKKVLDKIVEESLRDAAIWDEVKNRLKSSALGLSGGQQQRICIARAIAMNPEIILMDEPTSALDPISTLKVEELIRKLEDKY--TIVIVTHNMQQAARISDKTAFFLNGELVE 228          
BLAST of CN192238 vs. ExPASy Swiss-Prot
Match: PSTB_CLOAB (Phosphate import ATP-binding protein pstB OS=Clostridium acetobutylicum GN=pstB PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 9.848e-28
Identity = 70/165 (42.42%), Postives = 104/165 (63.03%), Query Frame = -3
Query:  217 GTVFLDGRDI-TDLDVLSLRRKVGMLFQIPALFEGTVADNIRYGPQLRGKK-------LTENEVYKXXXXXXXXXXXXSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVE 687
            G V  +G+D+  D D + LR++VGM+FQ P  F  ++ DN+ YGP++ G K       + E  + K             K+   +S GQ QR+ +ARTLA EPEVLL+DEPTSALDPIST  IE+++ +LK K+  T+++V+H+++Q  RI+D     +NGE+VE
Sbjct:   63 GEVMFEGKDVYKDYDEIELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKNKGKLDEIVERSL-KGSALWEEVKDRLKKSALGLSGGQQQRLCIARTLAVEPEVLLMDEPTSALDPISTLKIEELMDELKHKY--TVIIVTHNMQQAGRISDNTAFFLNGEVVE 224          
The following BLAST results are available for this feature:
BLAST of CN192238 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
AB17I_ARATH1.895e-7173.63ABC transporter I family member 17 OS=Arabidopsis ... [more]
PSTB2_THETN7.785e-3347.88Phosphate import ATP-binding protein pstB 2 OS=The... [more]
PSTB1_THETN1.328e-3245.40Phosphate import ATP-binding protein pstB 1 OS=The... [more]
PSTB_METBU2.344e-2945.12Phosphate import ATP-binding protein pstB OS=Metha... [more]
PSTB_THEMA3.385e-2843.03Phosphate import ATP-binding protein pstB OS=Therm... [more]
PSTB_CARHZ4.421e-2841.28Phosphate import ATP-binding protein pstB OS=Carbo... [more]
PSTB_CLOPS9.848e-2842.07Phosphate import ATP-binding protein pstB OS=Clost... [more]
PSTB_CLOPE9.848e-2842.07Phosphate import ATP-binding protein pstB OS=Clost... [more]
PSTB_CLOP19.848e-2842.07Phosphate import ATP-binding protein pstB OS=Clost... [more]
PSTB_CLOAB9.848e-2842.42Phosphate import ATP-binding protein pstB OS=Clost... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0006J05_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0006J05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN192238 ID=CN192238; Name=CN192238; organism=Citrus sinensis; type=EST; length=698bp
TTTTTTTTTTTTTTTTTAAGAAGTATATGTAGTACAATACTTGCTCATAT
AGTAATACATAATTCAGTTTATTTTCATAATCAAGTACAAATTGGACAGC
ACAGTTGACATGGTGGAATAAAATTGAACAAGTGACATGTCTCCCTAACC
GCTGAGTTGAAGAAACCTTAGTGCCATGGGATGCTTGGCTTCCGAGAGCA
GATCAGGTTTCAGAACTTCCACAATCTCACCATTCACTAGCAGGCAAACG
ACGTCGGCGATCCTTTGGATTTGTTTGATGCTGTGAGAGACCATGACAAT
TGTCATTCCATGTTTCTTCTTCAGCTTAACTAACACATCCTCTATGTTCT
GTGTCGATATTGGATCCAATGCACTCGTTGGCTCATCCAGAAGCAGAACC
TCTGGTTCGTTGGCCAGTGTTCGAGCTAGAGCAACTCTTTGAGCTTGGCC
AACTGATATTTCGGCACCCGTTTTGCTAAGGAAAGAGGAGTCGAGGTCTG
CAAGTGAGAGCAACTTGTAAACCTCATTCTCGGTTAATTTCTTTCCCCTC
AATTGTGGTCCATATCGAATATTATCAGCAACTGTGCCTTCGAAGAGAGC
CGGAATCTGGAAGAGCATGCCAACTTTACGACGAAGAGAGAGAACGTCGA
GATCAGTAATATCGCGGCCGTCCAAGAACACCGTACCAGAGGGTGGCT
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