CN192233

Overview
NameCN192233
Unique NameCN192233
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length658
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5855 contig Csv1_Contig5855:1063..1720. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN192233 vs. ExPASy Swiss-Prot
Match: SBP_ARATH (Putative selenium-binding protein OS=Arabidopsis thaliana GN=At4g14030 PE=2 SV=1)

HSP 1 Score: 296.204 bits (757), Expect = 9.917e-80
Identity = 135/167 (80.84%), Postives = 151/167 (90.42%), Query Frame = -3 
Query:  156 MPGFITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI 656
            MPG ITDFLISLDDRF+YF NWLHGDIRQYNIEDPKNPVLTGQIWVGGL +KGSPV AV +DG  +Q +VP+++G  LRGGPQMIQLSLDGKRLY TNSLFSAWD QFYPE+ EKGSH++QIDV++EKGG+ INP+FFVDF  EPDGP+LAHEMRYPGGDCTSDIWI
Sbjct:  324 MPGLITDFLISLDDRFIYFVNWLHGDIRQYNIEDPKNPVLTGQIWVGGLLQKGSPVKAVGEDGNTFQFEVPQIKGKSLRGGPQMIQLSLDGKRLYATNSLFSAWDRQFYPEIMEKGSHIIQIDVDTEKGGLTINPDFFVDFGDEPDGPSLAHEMRYPGGDCTSDIWI 490
[Close]
BLAST of CN192233 vs. ExPASy Swiss-Prot
Match: SBP1_XENTR (Selenium-binding protein 1 OS=Xenopus tropicalis GN=selenbp1 PE=2 SV=1)

HSP 1 Score: 244.202 bits (622), Expect = 4.472e-64
Identity = 113/167 (67.66%), Postives = 134/167 (80.24%), Query Frame = -3 
Query:  156 MPGFITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI 656
            MPG ITD LISLDDRFLYFSNWLHGDIRQY+I DP+NP L GQI++GG   +G PV  + D     Q D   V+G ++ GGPQMIQLSLDGKRLYVTNSL+S WD QFYP++ ++GS MLQIDV++EKGG+ +NPNF VDF  EP GP LAHE+RYPGGDC+SDIW+
Sbjct:  306 MPGLITDILISLDDRFLYFSNWLHGDIRQYDITDPRNPKLVGQIFLGGSILRGGPVTVLEDKDLECQPDPVIVKGKKVPGGPQMIQLSLDGKRLYVTNSLYSKWDKQFYPDMIKEGSVMLQIDVDTEKGGLKLNPNFLVDFGKEPGGPVLAHELRYPGGDCSSDIWV 472
[Close]
BLAST of CN192233 vs. ExPASy Swiss-Prot
Match: SBP1A_XENLA (Selenium-binding protein 1-A OS=Xenopus laevis GN=selenbp1-A PE=2 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 3.786e-63
Identity = 112/167 (67.07%), Postives = 134/167 (80.24%), Query Frame = -3 
Query:  156 MPGFITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI 656
            MPG ITD LISLDDRFLYFSNWLHGDIRQY+I D +NP L GQI++GG  ++G PV  + D     Q D   V+G  + GGPQMIQLSLDGKR+YVT+SL+S WD QFYP+L ++G+ MLQIDV+++KGG+ +NPNF VDF  EPDGP LAHE+RYPGGDCTSDIWI
Sbjct:  306 MPGLITDILISLDDRFLYFSNWLHGDIRQYDITDTRNPKLVGQIFLGGSIQRGGPVTVLEDKELECQPDPVTVKGKIIPGGPQMIQLSLDGKRIYVTSSLYSIWDKQFYPDLLKEGAVMLQIDVDTKKGGLKLNPNFLVDFGKEPDGPVLAHEIRYPGGDCTSDIWI 472
[Close]
BLAST of CN192233 vs. ExPASy Swiss-Prot
Match: SBP1_PONAB (Selenium-binding protein 1 OS=Pongo abelii GN=SELENBP1 PE=2 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 8.434e-63
Identity = 113/167 (67.66%), Postives = 133/167 (79.64%), Query Frame = -3 
Query:  156 MPGFITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI 656
            MPG ITD L+SLDDRFLYFSNWLHGD+RQY+I DP+ P LTGQ++VGG   KG PV  + D     Q +   V+G R+ GGPQMIQLSLDGKRLYVT SL+SAWD QFYP+L  +GS MLQ+DV++ KGG+ +NPNF VDF  EP GPALAHE+RYPGGDC+SDIWI
Sbjct:  306 MPGLITDILLSLDDRFLYFSNWLHGDLRQYDISDPQRPRLTGQLFVGGSIVKGGPVQVLEDQELKSQPEPLVVKGKRVAGGPQMIQLSLDGKRLYVTTSLYSAWDKQFYPDLIREGSVMLQVDVDTVKGGLKLNPNFLVDFGKEPLGPALAHELRYPGGDCSSDIWI 472
[Close]
BLAST of CN192233 vs. ExPASy Swiss-Prot
Match: SBP1_HUMAN (Selenium-binding protein 1 OS=Homo sapiens GN=SELENBP1 PE=1 SV=2)

HSP 1 Score: 239.195 bits (609), Expect = 1.439e-62
Identity = 111/167 (66.47%), Postives = 134/167 (80.24%), Query Frame = -3 
Query:  156 MPGFITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI 656
            MPG ITD L+SLDDRFLYFSNWLHGD+RQY+I DP+ P LTGQ+++GG   KG PV  + D+    Q +   V+G R+ GGPQMIQLSLDGKRLY+T SL+SAWD QFYP+L  +GS MLQ+DV++ KGG+ +NPNF VDF  EP GPALAHE+RYPGGDC+SDIWI
Sbjct:  306 MPGLITDILLSLDDRFLYFSNWLHGDLRQYDISDPQRPRLTGQLFLGGSIVKGGPVQVLEDEELKSQPEPLVVKGKRVAGGPQMIQLSLDGKRLYITTSLYSAWDKQFYPDLIREGSVMLQVDVDTVKGGLKLNPNFLVDFGKEPLGPALAHELRYPGGDCSSDIWI 472
[Close]
BLAST of CN192233 vs. ExPASy Swiss-Prot
Match: SBP1B_XENLA (Selenium-binding protein 1-B OS=Xenopus laevis GN=selenbp1-B PE=2 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 5.467e-62
Identity = 110/167 (65.87%), Postives = 133/167 (79.64%), Query Frame = -3 
Query:  156 MPGFITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI 656
            MPG ITD LISLDDRFLYFSNWLHGDIRQY+I + +NP L GQI++GG  +KG PV    D     Q D   V+G  + GGPQMIQLSLDGKR+YVT+S++S WD QFYP++ ++G+ MLQIDV++EKGG+ +NPNF VDF  EPDGP LAHE+RYPGGDC+SDIWI
Sbjct:  306 MPGLITDILISLDDRFLYFSNWLHGDIRQYDITNIRNPKLVGQIFLGGSIQKGGPVAVQEDKELECQPDPVTVKGKIIPGGPQMIQLSLDGKRIYVTSSIYSIWDKQFYPDMLKEGAVMLQIDVDTEKGGLKLNPNFLVDFGKEPDGPVLAHELRYPGGDCSSDIWI 472
[Close]
BLAST of CN192233 vs. ExPASy Swiss-Prot
Match: SBP1_RAT (Selenium-binding protein 1 OS=Rattus norvegicus GN=Selenbp1 PE=1 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 3.544e-61
Identity = 113/167 (67.66%), Postives = 130/167 (77.84%), Query Frame = -3 
Query:  156 MPGFITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI 656
            MPG ITD L+SLDDRFLYFSNWLHGDIRQY+I +PK P LTGQI++GG   KG  V  + D     Q +   V+G R+ GGPQMIQLSLDGKRLYVT SL+SAWD QFYP L  +GS MLQIDV++  GG+ +NPNF VDF  EP GPALAHE+RYPGGDC+SDIWI
Sbjct:  306 MPGLITDILLSLDDRFLYFSNWLHGDIRQYDISNPKKPRLTGQIFLGGSIVKGGSVQVLEDQELTCQPEPLVVKGKRVPGGPQMIQLSLDGKRLYVTTSLYSAWDKQFYPNLIREGSVMLQIDVDTANGGLKLNPNFLVDFGKEPLGPALAHELRYPGGDCSSDIWI 472
[Close]
BLAST of CN192233 vs. ExPASy Swiss-Prot
Match: SBP1_BOVIN (Selenium-binding protein 1 OS=Bos taurus GN=SELENBP1 PE=1 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 1.031e-60
Identity = 110/167 (65.87%), Postives = 130/167 (77.84%), Query Frame = -3 
Query:  156 MPGFITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI 656
            MP  ITD L+SLDDRFLYFSNWLHGD+RQY+I DPK P L GQI++GG   KG PV  + D     Q +   V+G R+ GGPQMIQLSLDG RLYVT SL+SAWD QFYP+L  +GS MLQIDV++ +GG+ +NPNF VDF  EP GPALAHE+RYPGGDC+SDIW+
Sbjct:  306 MPSLITDILLSLDDRFLYFSNWLHGDLRQYDISDPKRPRLVGQIFLGGSIVKGGPVQVLEDQELKCQPEPLVVKGKRVAGGPQMIQLSLDGTRLYVTTSLYSAWDKQFYPDLIREGSVMLQIDVDTVRGGLKLNPNFLVDFGKEPLGPALAHELRYPGGDCSSDIWL 472
[Close]
BLAST of CN192233 vs. ExPASy Swiss-Prot
Match: SBP1_MOUSE (Selenium-binding protein 1 OS=Mus musculus GN=Selenbp1 PE=1 SV=2)

HSP 1 Score: 229.565 bits (584), Expect = 1.140e-59
Identity = 109/167 (65.27%), Postives = 129/167 (77.25%), Query Frame = -3 
Query:  156 MPGFITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI 656
            MPG ITD L+SLDDRFLYFSNWLHGDIRQY+I +P+ P L GQI++GG   +G  V  + D     Q +   V+G R+ GGPQMIQLSLDGKRLY T SL+SAWD QFYP+L  +GS MLQIDV++  GG+ +NPNF VDF  EP GPALAHE+RYPGGDC+SDIWI
Sbjct:  306 MPGLITDILLSLDDRFLYFSNWLHGDIRQYDISNPQKPRLAGQIFLGGSIVRGGSVQVLEDQELTCQPEPLVVKGKRIPGGPQMIQLSLDGKRLYATTSLYSAWDKQFYPDLIREGSMMLQIDVDTVNGGLKLNPNFLVDFGKEPLGPALAHELRYPGGDCSSDIWI 472
[Close]
BLAST of CN192233 vs. ExPASy Swiss-Prot
Match: SBP2_MOUSE (Selenium-binding protein 2 OS=Mus musculus GN=Selenbp2 PE=1 SV=2)

HSP 1 Score: 228.409 bits (581), Expect = 2.539e-59
Identity = 108/167 (64.67%), Postives = 129/167 (77.25%), Query Frame = -3 
Query:  156 MPGFITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI 656
            MPG ITD L+SLDDRFLYFSNWLHGDIRQY+I +P+ P LTGQI++GG   +G  V  + D     Q +   V+G R+ GGPQMIQLSLDGKRLY T SL+S WD QFYP+L  +GS MLQ+DV++  GG+ +NPNF VDF  EP GPALAHE+RYPGGDC+SDIWI
Sbjct:  306 MPGLITDILLSLDDRFLYFSNWLHGDIRQYDISNPQKPRLTGQIFLGGSIVRGGSVQVLEDQELTCQPEPLVVKGKRIPGGPQMIQLSLDGKRLYATTSLYSDWDKQFYPDLIREGSVMLQVDVDTVNGGLKLNPNFLVDFGKEPLGPALAHELRYPGGDCSSDIWI 472
The following BLAST results are available for this feature:
BLAST of CN192233 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
SBP_ARATH9.917e-8080.84Putative selenium-binding protein OS=Arabidopsis t... [more]
SBP1_XENTR4.472e-6467.66Selenium-binding protein 1 OS=Xenopus tropicalis G... [more]
SBP1A_XENLA3.786e-6367.07Selenium-binding protein 1-A OS=Xenopus laevis GN=... [more]
SBP1_PONAB8.434e-6367.66Selenium-binding protein 1 OS=Pongo abelii GN=SELE... [more]
SBP1_HUMAN1.439e-6266.47Selenium-binding protein 1 OS=Homo sapiens GN=SELE... [more]
SBP1B_XENLA5.467e-6265.87Selenium-binding protein 1-B OS=Xenopus laevis GN=... [more]
SBP1_RAT3.544e-6167.66Selenium-binding protein 1 OS=Rattus norvegicus GN... [more]
SBP1_BOVIN1.031e-6065.87Selenium-binding protein 1 OS=Bos taurus GN=SELENB... [more]
SBP1_MOUSE1.140e-5965.27Selenium-binding protein 1 OS=Mus musculus GN=Sele... [more]
SBP2_MOUSE2.539e-5964.67Selenium-binding protein 2 OS=Mus musculus GN=Sele... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0006J01_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0006J01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN192233 ID=CN192233; Name=CN192233; organism=Citrus sinensis; type=EST; length=658bp
GAGGCATAAATCAAACCATTATCTTAAACTGGCTATTCCAGAACCAGAAC
GGACACTGACTTCCACATATGGACGTAATCACCCCATCAATCAAAGCGGT
ATCCTATCTGGACATAATGGACACCGTTTATTGCCAGAATAGATTAAGAT
GGTTAAATCCATATATCTGAAGTGCAATCACCACCAGGATACCTCATCTC
ATGAGCTAGGGCAGGACCATCAGGTTCAGCTTCAAAGTCCACAAAAAAGT
TTGGATTGATAGCCATACCACCCTTCTCGGAGTTGACATCAATCTGTAGC
ATGTGGGATCCTTTCTCCTTGAGTTCAGGATAAAATTGACAATCCCATGC
ACTAAAGAGCGAGTTGGTAACATAGAGCCGCTTCCCATCTAAGCTTAACT
GAATCATCTGAGGTCCCCCTCTCAAACGATGCCCCTGGACCTCTGGAACA
TCAGACTGATATGGCTGACCATCATCTGTTACAGCCACTACAGGACTTCC
TTTCCGAAACAGCCCCCCGACCCAGATTTGGCCTGTCAATACAGGATTTT
TGGGATCCTCAATGTTATACTGTCGAATATCTCCATGAAGCCAGTTGGAG
AAGTAAAGAAACCGATCATCAAGAGAAATCAGAAAGTCAGTAATAAACCC
TGGCATCT
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