CN192232

Overview
NameCN192232
Unique NameCN192232
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length565
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11941 contig Csv1_Contig11941:125..689. BLAST: Citrus Unigene V1 Contigs to Trembl
Homology
BLAST of CN192232 vs. ExPASy Swiss-Prot
Match: MT1_MIMGU (Metallothionein-like protein 1 OS=Mimulus guttatus PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 7.496e-16
Identity = 41/65 (63.08%), Postives = 49/65 (75.38%), Query Frame = -1
Query:  374 CGGS---SMYPDLRSFESTTVATETLVLGVAPVKMHSEGSEMGFGAEGGCGCKCGPNSKCDPCNC 559
            CG +   SMYPD+ +  +TTV   T++ GVAP+KM+SEGSE  FGAEGG GCKCG N KCDPCNC
Sbjct:   13 CGDNCSCSMYPDMET--NTTV---TMIEGVAPLKMYSEGSEKSFGAEGGNGCKCGSNCKCDPCNC 72          
BLAST of CN192232 vs. ExPASy Swiss-Prot
Match: MT2_ACTDE (Metallothionein-like protein type 2 OS=Actinidia deliciosa GN=pKIWI504 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.670e-15
Identity = 40/63 (63.49%), Postives = 44/63 (69.84%), Query Frame = -1
Query:  374 GCGGSSMYPDLRSFESTTVATETLVLGVAPVKMHSEGSEMGFGAEGGCGCKCGPNSKCDPCNC 562
            GCGG  MYPDL   E TT  TETL++GVAP K + EGSEMG  AE   GCKCG + KCDPC C
Sbjct:   19 GCGGCGMYPDLSYSEMTT--TETLIVGVAPQKTYFEGSEMGVAAEN--GCKCGSDCKCDPCTC 77          
BLAST of CN192232 vs. ExPASy Swiss-Prot
Match: MT2_CICAR (Metallothionein-like protein 2 OS=Cicer arietinum PE=3 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 2.411e-14
Identity = 38/63 (60.32%), Postives = 43/63 (68.25%), Query Frame = -1
Query:  374 GCGGSSMYPDLRSFESTTVATETLVLGVAPVKMHSEGSEMGFGAEGGCGCKCGPNSKCDPCNC 562
            GCGG  MYPD+   E TT  +ETLV+GVA  K   EG+EMGFGAE   GCKCG N  C+PC C
Sbjct:   19 GCGGCKMYPDMSYTEQTT--SETLVMGVASGKTQFEGAEMGFGAEND-GCKCGSNCTCNPCTC 78          
BLAST of CN192232 vs. ExPASy Swiss-Prot
Match: MT2_MALDO (Metallothionein-like protein type 2 OS=Malus domestica GN=MT1 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.372e-14
Identity = 38/63 (60.32%), Postives = 41/63 (65.08%), Query Frame = -1
Query:  374 GCGGSSMYPDLRSFESTTVATETLVLGVAPVKMHSEGSEMGFGAEGGCGCKCGPNSKCDPCNC 562
            GC G  M PDL   E +T  TETLV+GVAP K H E SEMG  AE   GCKCG N  C+PCNC
Sbjct:   20 GCNGCGMAPDLSYMEGST--TETLVMGVAPQKSHMEASEMGVAAEN--GCKCGDNCTCNPCNC 78          
BLAST of CN192232 vs. ExPASy Swiss-Prot
Match: MT2_RICCO (Metallothionein-like protein type 2 OS=Ricinus communis GN=MTI PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.016e-14
Identity = 40/64 (62.50%), Postives = 42/64 (65.62%), Query Frame = -1
Query:  374 GCGGSSMYPDLRSFESTTVATETLVLGVAPVKMHSEGSEMGF-GAEGGCGCKCGPNSKCDPCNC 562
            GCGG  MYPD+   E TT  TETLVLGV   K H EG EMG  GAE G GCKCG N  C+PC C
Sbjct:   19 GCGGCKMYPDMSFSEKTT--TETLVLGVGAEKAHFEGGEMGVVGAEEG-GCKCGDNCTCNPCTC 79          
BLAST of CN192232 vs. ExPASy Swiss-Prot
Match: MT1_COFAR (Metallothionein-like protein 1 OS=Coffea arabica GN=METAL1 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.548e-13
Identity = 38/65 (58.46%), Postives = 45/65 (69.23%), Query Frame = -1
Query:  374 GGCGGSSMYPDLRSFESTTVATETLVLGVAPVKM-HSEGSEMGFGAEGGCGCKCGPNSKCDPCNC 565
            GGCGG  MYP+L   E+T  A ETL+LGVAP K  + EG+     AE G GCKCGP+ KC+PCNC
Sbjct:   18 GGCGGCKMYPELSYTENT--AAETLILGVAPPKTTYLEGAGEEAAAENG-GCKCGPDCKCNPCNC 79          
BLAST of CN192232 vs. ExPASy Swiss-Prot
Match: MT2A_ORYSJ (Metallothionein-like protein 2A OS=Oryza sativa subsp. japonica GN=MT2A PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.257e-12
Identity = 35/65 (53.85%), Postives = 43/65 (66.15%), Query Frame = -1
Query:  374 GCGGSSMYPDLRSFESTTVATETLVLGVAPVKMHSEGSEMGFGAEGGC--GCKCGPNSKCDPCNC 562
            GCGG  MYP++   E TT  T+T+++GVAP K H+EG E G  A  G   GCKCG N  C+PCNC
Sbjct:   19 GCGGCKMYPEMAE-EVTT--TQTVIMGVAPSKGHAEGLEAGAAAGAGAENGCKCGDNCTCNPCNC 80          
BLAST of CN192232 vs. ExPASy Swiss-Prot
Match: MT2B_SOLLC (Metallothionein-like protein type 2 B OS=Solanum lycopersicum GN=MTB PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.576e-12
Identity = 34/63 (53.97%), Postives = 38/63 (60.32%), Query Frame = -1
Query:  374 GCGGSSMYPDLRSFESTTVATETLVLGVAPVKMHSEGSEMGFGAEGGCGCKCGPNSKCDPCNC 562
            GCGG  MYPD+   ES+T  TETLVLGV P K      EMG       GCKCG + KC+PC C
Sbjct:   19 GCGGCKMYPDMSYTESSTT-TETLVLGVGPEKTSFGAMEMGESPVAENGCKCGSDCKCNPCTC 80          
BLAST of CN192232 vs. ExPASy Swiss-Prot
Match: MT2_TRIRP (Metallothionein-like protein 2 OS=Trifolium repens GN=MT1A PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.120e-11
Identity = 37/63 (58.73%), Postives = 40/63 (63.49%), Query Frame = -1
Query:  374 GCGGSSMYPDLRSFESTTVATETLVLGVAPVKMHSEGSEMGFGAEGGCGCKCGPNSKCDPCNC 562
            GCGG  M  DL   ESTT  TET+V+GV   K   EG+EMG  AE G GCKCG N  CDPC C
Sbjct:   19 GCGGCKMNADLSYTESTT--TETIVMGVGSAKAQFEGAEMG--AESG-GCKCGANCTCDPCTC 76          
BLAST of CN192232 vs. ExPASy Swiss-Prot
Match: MT4C_ORYSJ (Metallothionein-like protein 4C OS=Oryza sativa subsp. japonica GN=MT4C PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.463e-11
Identity = 37/68 (54.41%), Postives = 42/68 (61.76%), Query Frame = -1
Query:  374 GCGGS--SMYPDLRSFESTTVATETLVLGVAPVKMHSEGSEMGFGAEGG---CGCKCGPNSKCDPCNC 562
            GCGG    MYPDL    +TT  T T VLGVAP K HSEG  +G  AE G    GC CG + +C+PCNC
Sbjct:   13 GCGGGCGKMYPDLAEKITTTTTTATTVLGVAPEKGHSEG--VGKAAESGEAAHGCSCGSSCRCNPCNC 78          
The following BLAST results are available for this feature:
BLAST of CN192232 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
MT1_MIMGU7.496e-1663.08Metallothionein-like protein 1 OS=Mimulus guttatus... [more]
MT2_ACTDE1.670e-1563.49Metallothionein-like protein type 2 OS=Actinidia d... [more]
MT2_CICAR2.411e-1460.32Metallothionein-like protein 2 OS=Cicer arietinum ... [more]
MT2_MALDO5.372e-1460.32Metallothionein-like protein type 2 OS=Malus domes... [more]
MT2_RICCO7.016e-1462.50Metallothionein-like protein type 2 OS=Ricinus com... [more]
MT1_COFAR4.548e-1358.46Metallothionein-like protein 1 OS=Coffea arabica G... [more]
MT2A_ORYSJ2.257e-1253.85Metallothionein-like protein 2A OS=Oryza sativa su... [more]
MT2B_SOLLC8.576e-1253.97Metallothionein-like protein type 2 B OS=Solanum l... [more]
MT2_TRIRP1.120e-1158.73Metallothionein-like protein 2 OS=Trifolium repens... [more]
MT4C_ORYSJ1.463e-1154.41Metallothionein-like protein 4C OS=Oryza sativa su... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0006J01_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0006J01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN192232 ID=CN192232; Name=CN192232; organism=Citrus sinensis; type=EST; length=565bp
TTTTTTTTTTTTTTTTTGAAACAACGGTGTAAATTTATTATACCGTACAT
AAACCAAACACATTTTACAATATAGATAAAAGTCTGAGAGGAAGCTTCCC
ATTAGAATAGCAGCAGTAACAGATACGCTCGTACACAAAGTCACAGAGAC
ACTTAATGATTAATTAACTAGCCATGGATCTGCAACAGACCCAGTTAAGG
ATTCGGAGAAGCAGCCATGGCTGGTTTTTATTTTACAAACAAAAGCTCAT
AAAACGACCTCCAACAAAGCCAACCACAAACGAAAAATAGTTCTTTTTAT
TGATACTATAATTTAAACGACCTCACAGCGCTGCTTTATTCTGGGGCATG
TTCACGTCTCGTAGTCTTCATTAACAGTTACAAGGGTCGCACTTGGAGTT
TGGTCCACACTTGCAGCCGCAGCCGCCCTCGGCTCCGAATCCCATCTCGG
ACCCCTCAGAGTGCATCTTGACAGGAGCAACACCGAGGACGAGGGTCTCG
GTGGCTACGGTGGTGCTCTCAAAGGATCTCAAGTCAGGGTACATGGAGCT
ACCGCCGCAACCGCC
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