CN192229

Overview
NameCN192229
Unique NameCN192229
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length571
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13673 contig Csv1_Contig13673:62..632. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN192229 vs. ExPASy Swiss-Prot
Match: ISCU_MOUSE (Iron-sulfur cluster assembly enzyme ISCU, mitochondrial OS=Mus musculus GN=Iscu PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.275e-28
Identity = 60/78 (76.92%), Postives = 70/78 (89.74%), Query Frame = -3
Query:  336 EETGQIVDACFKTFGCGSAIASSSVATEWVKGKQIQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKR 569
            +E G+IVDA FKTFGCGSAIASSS+ATEWVKGK ++E L+IKNT+IAK L LPPVKLHCSMLAEDAIKAA+ DY+ K+
Sbjct:   81 DEKGKIVDARFKTFGCGSAIASSSLATEWVKGKTVEEALTIKNTDIAKELCLPPVKLHCSMLAEDAIKAALADYKLKQ 158          
BLAST of CN192229 vs. ExPASy Swiss-Prot
Match: ISCU_HUMAN (Iron-sulfur cluster assembly enzyme ISCU, mitochondrial OS=Homo sapiens GN=ISCU PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.275e-28
Identity = 60/78 (76.92%), Postives = 70/78 (89.74%), Query Frame = -3
Query:  336 EETGQIVDACFKTFGCGSAIASSSVATEWVKGKQIQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKR 569
            +E G+IVDA FKTFGCGSAIASSS+ATEWVKGK ++E L+IKNT+IAK L LPPVKLHCSMLAEDAIKAA+ DY+ K+
Sbjct:   80 DEKGKIVDARFKTFGCGSAIASSSLATEWVKGKTVEEALTIKNTDIAKELCLPPVKLHCSMLAEDAIKAALADYKLKQ 157          
BLAST of CN192229 vs. ExPASy Swiss-Prot
Match: ISU1_DEBHA (Iron sulfur cluster assembly protein 1, mitochondrial OS=Debaryomyces hansenii GN=ISU1 PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.631e-26
Identity = 60/79 (75.95%), Postives = 66/79 (83.54%), Query Frame = -3
Query:  333 EETGQIVDACFKTFGCGSAIASSSVATEWVKGKQIQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKRT 569
            +ETG I D  FKTFGCGSAIASSS  TE VKGK I+E + IKNT IAK LSLPPVKLHCSMLAEDAIK+AVKDY +KR+
Sbjct:   83 DETGVIKDVKFKTFGCGSAIASSSYLTELVKGKTIEEAVKIKNTAIAKELSLPPVKLHCSMLAEDAIKSAVKDYRSKRS 161          
BLAST of CN192229 vs. ExPASy Swiss-Prot
Match: NIFU_RICPR (NifU-like protein OS=Rickettsia prowazekii GN=nifU PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 4.744e-26
Identity = 55/73 (75.34%), Postives = 63/73 (86.30%), Query Frame = -3
Query:  336 IVDACFKTFGCGSAIASSSVATEWVKGKQIQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKR 554
            I DA FKTFGCGSAIASSS+ TEW+KGK +++   IKNTEIAK LSLPPVKLHCS+LAEDAIKAA+ DY+ KR
Sbjct:   53 ITDAKFKTFGCGSAIASSSLVTEWIKGKSVEDAKEIKNTEIAKELSLPPVKLHCSLLAEDAIKAAIADYKQKR 125          
BLAST of CN192229 vs. ExPASy Swiss-Prot
Match: NIFU_BUCAP (NifU-like protein OS=Buchnera aphidicola subsp. Schizaphis graminum GN=nifU PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 4.744e-26
Identity = 54/79 (68.35%), Postives = 65/79 (82.28%), Query Frame = -3
Query:  330 ETGQIVDACFKTFGCGSAIASSSVATEWVKGKQIQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKRTK 566
            E G I DACFKT+GCGSAIASSS+ TEW+KGK I E  +IKNT I + L LPPVK+HCS+LAEDAIKAA+ DY++K+ K
Sbjct:   49 EQGIIEDACFKTYGCGSAIASSSLVTEWIKGKSITEAEAIKNTSIVEELELPPVKIHCSILAEDAIKAAISDYKSKKNK 127          
BLAST of CN192229 vs. ExPASy Swiss-Prot
Match: NIFU_BUCAI (NifU-like protein OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=nifU PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 6.196e-26
Identity = 55/77 (71.43%), Postives = 64/77 (83.12%), Query Frame = -3
Query:  336 ETGQIVDACFKTFGCGSAIASSSVATEWVKGKQIQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKR 566
            E G I DACFKT+GCGSAIASSS+ TEWVKGK I+E  SIKNT I + L LPPVK+HCS+LAEDAIKAA+ DY+ K+
Sbjct:   49 EKGIIEDACFKTYGCGSAIASSSLVTEWVKGKSIEEAESIKNTTIVEELDLPPVKIHCSILAEDAIKAAISDYKRKK 125          
BLAST of CN192229 vs. ExPASy Swiss-Prot
Match: ISU1_KLULA (Iron sulfur cluster assembly protein 1, mitochondrial OS=Kluyveromyces lactis GN=ISU1 PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 8.093e-26
Identity = 57/78 (73.08%), Postives = 66/78 (84.62%), Query Frame = -3
Query:  336 EETGQIVDACFKTFGCGSAIASSSVATEWVKGKQIQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKR 569
            +ETG I +  FKTFGCGSAIASSS  TE V+GK +++   IKNTEIA+ LSLPPVKLHCSMLAEDAIKAA+KDY+AKR
Sbjct:   97 DETGVIENVKFKTFGCGSAIASSSYMTELVRGKTLEDAAKIKNTEIARELSLPPVKLHCSMLAEDAIKAAIKDYQAKR 174          
BLAST of CN192229 vs. ExPASy Swiss-Prot
Match: NIFU_SHIFL (NifU-like protein OS=Shigella flexneri GN=nifU PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 8.947e-25
Identity = 53/77 (68.83%), Postives = 65/77 (84.42%), Query Frame = -3
Query:  336 ETGQIVDACFKTFGCGSAIASSSVATEWVKGKQIQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKR 566
            + G I DA FKT+GCGSAIASSS+ TEWVKGK + E  +IKNT+IA+ L LPPVK+HCS+LAEDAIKAA+ DY++KR
Sbjct:   49 DEGIIEDARFKTYGCGSAIASSSLVTEWVKGKSLDEAQAIKNTDIAEELELPPVKIHCSILAEDAIKAAIADYKSKR 125          
BLAST of CN192229 vs. ExPASy Swiss-Prot
Match: NIFU_ECOLI (NifU-like protein OS=Escherichia coli (strain K12) GN=nifU PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 8.947e-25
Identity = 53/77 (68.83%), Postives = 65/77 (84.42%), Query Frame = -3
Query:  336 ETGQIVDACFKTFGCGSAIASSSVATEWVKGKQIQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKR 566
            + G I DA FKT+GCGSAIASSS+ TEWVKGK + E  +IKNT+IA+ L LPPVK+HCS+LAEDAIKAA+ DY++KR
Sbjct:   49 DEGIIEDARFKTYGCGSAIASSSLVTEWVKGKSLDEAQAIKNTDIAEELELPPVKIHCSILAEDAIKAAIADYKSKR 125          
BLAST of CN192229 vs. ExPASy Swiss-Prot
Match: NIFU_ECOL6 (NifU-like protein OS=Escherichia coli O6 GN=nifU PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 8.947e-25
Identity = 53/77 (68.83%), Postives = 65/77 (84.42%), Query Frame = -3
Query:  336 ETGQIVDACFKTFGCGSAIASSSVATEWVKGKQIQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKR 566
            + G I DA FKT+GCGSAIASSS+ TEWVKGK + E  +IKNT+IA+ L LPPVK+HCS+LAEDAIKAA+ DY++KR
Sbjct:   49 DEGIIEDARFKTYGCGSAIASSSLVTEWVKGKSLDEAQAIKNTDIAEELELPPVKIHCSILAEDAIKAAIADYKSKR 125          
The following BLAST results are available for this feature:
BLAST of CN192229 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
ISCU_MOUSE2.275e-2876.92Iron-sulfur cluster assembly enzyme ISCU, mitochon... [more]
ISCU_HUMAN2.275e-2876.92Iron-sulfur cluster assembly enzyme ISCU, mitochon... [more]
ISU1_DEBHA1.631e-2675.95Iron sulfur cluster assembly protein 1, mitochondr... [more]
NIFU_RICPR4.744e-2675.34NifU-like protein OS=Rickettsia prowazekii GN=nifU... [more]
NIFU_BUCAP4.744e-2668.35NifU-like protein OS=Buchnera aphidicola subsp. Sc... [more]
NIFU_BUCAI6.196e-2671.43NifU-like protein OS=Buchnera aphidicola subsp. Ac... [more]
ISU1_KLULA8.093e-2673.08Iron sulfur cluster assembly protein 1, mitochondr... [more]
NIFU_SHIFL8.947e-2568.83NifU-like protein OS=Shigella flexneri GN=nifU PE=... [more]
NIFU_ECOLI8.947e-2568.83NifU-like protein OS=Escherichia coli (strain K12)... [more]
NIFU_ECOL68.947e-2568.83NifU-like protein OS=Escherichia coli O6 GN=nifU P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0006I23_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0006I23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN192229 ID=CN192229; Name=CN192229; organism=Citrus sinensis; type=EST; length=571bp
GAGGTTTTTTTTTTTTTTTTAACTTAAACCTGTATTACATTCACTGTAAC
AAAATAGTTCTACAATGAATCATATGTCATTCGTTCAGTTACGCAAGTAC
AATTACTTATGTGCAAAACTGCAGGTCCTTGGATCATTATTCATACACAG
TTCTTACTAATAACCATAAACTTTACCCCCTCCACCACACGACATCAATC
TTTAGGAGGTGCAGTTATCCTGATACATCTCCACAGGCAGAACATTAACA
TCATTTTCAAATGTTTACATCAATATCTTCAAACATCAGCAGCCCTTGGA
GCTGGTTCTGCCTCTGAAGCAGCACTTGGTTTGGTACGTTTAGCTTCGTA
ATCTTTTACAGCAGCCTTGATAGCATCTTCAGCAAGCATGCTGCAATGCA
GTTTAACAGGTGGTAGAGAAAGATGTTTTGCAATTTCCGTGTTTTTAATG
GACAAGACTTCCTGTATCTGCTTCCCTTTCACCCATTCCGTTGCAACAGA
AGATGAAGCGATGGCCGAGCCACAGCCGAAGGTCTTGAAGCAGGCGTCGA
CGATCTGACCAGTCTCTTCAT
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