CN192228

Overview
NameCN192228
Unique NameCN192228
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length735
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN192228 vs. ExPASy Swiss-Prot
Match: SNUT2_PONAB (U4/U6.U5 tri-snRNP-associated protein 2 OS=Pongo abelii GN=USP39 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.410e-27
Identity = 57/108 (52.78%), Postives = 79/108 (73.15%), Query Frame = -1
Query:  412 MILHMRRFTKNNFFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKYDLIANIVHDGKPEGGFYRVFVQRKSEELWYEMQDLHVSETLPQMVALSETYMQIYEQQ 735
            +I  ++RFTKNNFFVEKNPT+VNFP+ N++L++Y+       +E   + YDLIANIVHDGKP  G YR+ V       WYE+QDL V++ LPQM+ LSE Y+QI++++
Sbjct:  450 LIFCIKRFTKNNFFVEKNPTIVNFPITNVDLREYLSEEVQAVHEN--TTYDLIANIVHDGKPSEGSYRIHVLHHGTGKWYELQDLQVTDILPQMITLSEAYIQIWKRR 555          
BLAST of CN192228 vs. ExPASy Swiss-Prot
Match: SNUT2_MOUSE (U4/U6.U5 tri-snRNP-associated protein 2 OS=Mus musculus GN=Usp39 PE=2 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 4.103e-27
Identity = 56/108 (51.85%), Postives = 79/108 (73.15%), Query Frame = -1
Query:  412 MILHMRRFTKNNFFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKYDLIANIVHDGKPEGGFYRVFVQRKSEELWYEMQDLHVSETLPQMVALSETYMQIYEQQ 735
            +I  ++RFTKNNFFVEKNPT+VNFP+ N++L++Y+       ++   + YDLIANIVHDGKP  G YR+ V       WYE+QDL V++ LPQM+ LSE Y+QI++++
Sbjct:  449 LIFCIKRFTKNNFFVEKNPTIVNFPITNVDLREYLSEEVQAVHKN--TTYDLIANIVHDGKPSEGSYRIHVLHHGTGKWYELQDLQVTDILPQMITLSEAYIQIWKRR 554          
BLAST of CN192228 vs. ExPASy Swiss-Prot
Match: SNUT2_HUMAN (U4/U6.U5 tri-snRNP-associated protein 2 OS=Homo sapiens GN=USP39 PE=1 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 4.103e-27
Identity = 56/108 (51.85%), Postives = 79/108 (73.15%), Query Frame = -1
Query:  412 MILHMRRFTKNNFFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKYDLIANIVHDGKPEGGFYRVFVQRKSEELWYEMQDLHVSETLPQMVALSETYMQIYEQQ 735
            +I  ++RFTKNNFFVEKNPT+VNFP+ N++L++Y+       ++   + YDLIANIVHDGKP  G YR+ V       WYE+QDL V++ LPQM+ LSE Y+QI++++
Sbjct:  450 LIFCIKRFTKNNFFVEKNPTIVNFPITNVDLREYLSEEVQAVHKN--TTYDLIANIVHDGKPSEGSYRIHVLHHGTGKWYELQDLQVTDILPQMITLSEAYIQIWKRR 555          
BLAST of CN192228 vs. ExPASy Swiss-Prot
Match: UBP10_SCHPO (Probable mRNA-splicing protein ubp10 OS=Schizosaccharomyces pombe GN=ubp10 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.256e-17
Identity = 39/110 (35.45%), Postives = 71/110 (64.55%), Query Frame = -1
Query:  415 ILHMRRFTKNNFFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKYDLIANIVHD----GKPEGGFYRVFVQRKSEELWYEMQDLHVSETLPQMVALSETYMQIYEQ 732
            I H++RF KNN+F E+N T+V FP+ + ++  +I     + N K+ +KY+L+ANI+H+     + E   +R+ ++  S   WY++QDL+V E    M+ L E+++Q++E+
Sbjct:  391 IFHIKRFMKNNYFTERNQTIVTFPLDDFDMSPFIDDSFIQSNPKISTKYNLVANIIHESVTHAEEEFHNFRIQIRNPSTNKWYQIQDLYVEEISSDMIRLGESFIQLWER 500          
The following BLAST results are available for this feature:
BLAST of CN192228 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
SNUT2_PONAB1.410e-2752.78U4/U6.U5 tri-snRNP-associated protein 2 OS=Pongo a... [more]
SNUT2_MOUSE4.103e-2751.85U4/U6.U5 tri-snRNP-associated protein 2 OS=Mus mus... [more]
SNUT2_HUMAN4.103e-2751.85U4/U6.U5 tri-snRNP-associated protein 2 OS=Homo sa... [more]
UBP10_SCHPO2.256e-1735.45Probable mRNA-splicing protein ubp10 OS=Schizosacc... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0006I23_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0006I23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN192228 ID=CN192228; Name=CN192228; organism=Citrus sinensis; type=EST; length=735bp
TTTTTTTTTTTTTTTAATCAATTCTGTCATCATCACTGTTTTTTTATAAT
GAAGATAAATTTTCTGAGTTTTTTGAATTCAACAATCCATCTAAATAGTG
TGTTCAGAAATGAAAATCTAAAAATAAAAATCAAATAATTTAGAAACATA
TCTTACATGTCAAAAGTGTTTCTTAAAAAGAAAAACCTATGGCGCTCCAA
AAGATGGACTATTCTAAGTCTGTTCCAGGTCAAATCAAAACTAACAGCAA
AAAACCAAAAACGTCAATTTCTAAACTTAGTGAGGAAAACTCCTCCACAA
TGGGGGATATGTGCTACCTCAAAGGATCATTACTTTTTCCCGATCTCTTC
GTCAACTAAGCAAAACTGAACACACCTTACACATTGCAACTTGAAATCCT
CTACACTATTGCTGCTGCTCGTAAATCTGCATATAAGTCTCCGAAAGAGC
GACCATTTGAGGAAGAGTTTCTGAAACATGCAAATCCTGCATCTCATACC
ATAGTTCTTCTGACTTCCGCTGCACAAAAACCCTGTAGAATCCTCCCTCA
GGTTTACCATCATGAACGATGTTTGCAATTAGATCATACTTGGAACGCAG
TTTCTCATTCTCTTTTGGTGTTGGCAAAGGTATGTAGTCCTTCAATTCCA
AATTTTTCACCGGAAAGTTGACCAATGTTGGGTTCTTCTCCACAAAGAAG
TTATTCTTTGTAAAGCGTCGCATGTGAAGGATCAT
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