CN192228
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN192228 vs. ExPASy Swiss-Prot
Match: SNUT2_PONAB (U4/U6.U5 tri-snRNP-associated protein 2 OS=Pongo abelii GN=USP39 PE=2 SV=1) HSP 1 Score: 123.25 bits (308), Expect = 1.410e-27 Identity = 57/108 (52.78%), Postives = 79/108 (73.15%), Query Frame = -1 Query: 412 MILHMRRFTKNNFFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKYDLIANIVHDGKPEGGFYRVFVQRKSEELWYEMQDLHVSETLPQMVALSETYMQIYEQQ 735 +I ++RFTKNNFFVEKNPT+VNFP+ N++L++Y+ +E + YDLIANIVHDGKP G YR+ V WYE+QDL V++ LPQM+ LSE Y+QI++++ Sbjct: 450 LIFCIKRFTKNNFFVEKNPTIVNFPITNVDLREYLSEEVQAVHEN--TTYDLIANIVHDGKPSEGSYRIHVLHHGTGKWYELQDLQVTDILPQMITLSEAYIQIWKRR 555
BLAST of CN192228 vs. ExPASy Swiss-Prot
Match: SNUT2_MOUSE (U4/U6.U5 tri-snRNP-associated protein 2 OS=Mus musculus GN=Usp39 PE=2 SV=2) HSP 1 Score: 121.709 bits (304), Expect = 4.103e-27 Identity = 56/108 (51.85%), Postives = 79/108 (73.15%), Query Frame = -1 Query: 412 MILHMRRFTKNNFFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKYDLIANIVHDGKPEGGFYRVFVQRKSEELWYEMQDLHVSETLPQMVALSETYMQIYEQQ 735 +I ++RFTKNNFFVEKNPT+VNFP+ N++L++Y+ ++ + YDLIANIVHDGKP G YR+ V WYE+QDL V++ LPQM+ LSE Y+QI++++ Sbjct: 449 LIFCIKRFTKNNFFVEKNPTIVNFPITNVDLREYLSEEVQAVHKN--TTYDLIANIVHDGKPSEGSYRIHVLHHGTGKWYELQDLQVTDILPQMITLSEAYIQIWKRR 554
BLAST of CN192228 vs. ExPASy Swiss-Prot
Match: SNUT2_HUMAN (U4/U6.U5 tri-snRNP-associated protein 2 OS=Homo sapiens GN=USP39 PE=1 SV=2) HSP 1 Score: 121.709 bits (304), Expect = 4.103e-27 Identity = 56/108 (51.85%), Postives = 79/108 (73.15%), Query Frame = -1 Query: 412 MILHMRRFTKNNFFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKYDLIANIVHDGKPEGGFYRVFVQRKSEELWYEMQDLHVSETLPQMVALSETYMQIYEQQ 735 +I ++RFTKNNFFVEKNPT+VNFP+ N++L++Y+ ++ + YDLIANIVHDGKP G YR+ V WYE+QDL V++ LPQM+ LSE Y+QI++++ Sbjct: 450 LIFCIKRFTKNNFFVEKNPTIVNFPITNVDLREYLSEEVQAVHKN--TTYDLIANIVHDGKPSEGSYRIHVLHHGTGKWYELQDLQVTDILPQMITLSEAYIQIWKRR 555
BLAST of CN192228 vs. ExPASy Swiss-Prot
Match: UBP10_SCHPO (Probable mRNA-splicing protein ubp10 OS=Schizosaccharomyces pombe GN=ubp10 PE=2 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 2.256e-17 Identity = 39/110 (35.45%), Postives = 71/110 (64.55%), Query Frame = -1 Query: 415 ILHMRRFTKNNFFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKYDLIANIVHD----GKPEGGFYRVFVQRKSEELWYEMQDLHVSETLPQMVALSETYMQIYEQ 732 I H++RF KNN+F E+N T+V FP+ + ++ +I + N K+ +KY+L+ANI+H+ + E +R+ ++ S WY++QDL+V E M+ L E+++Q++E+ Sbjct: 391 IFHIKRFMKNNYFTERNQTIVTFPLDDFDMSPFIDDSFIQSNPKISTKYNLVANIIHESVTHAEEEFHNFRIQIRNPSTNKWYQIQDLYVEEISSDMIRLGESFIQLWER 500 The following BLAST results are available for this feature:
BLAST of CN192228 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 4
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CN192228 ID=CN192228; Name=CN192228; organism=Citrus sinensis; type=EST; length=735bpback to top |