CN192217

Overview
NameCN192217
Unique NameCN192217
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length627
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN192217 vs. ExPASy Swiss-Prot
Match: NC2A_RAT (Dr1-associated corepressor OS=Rattus norvegicus GN=Drap1 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.839e-24
Identity = 57/129 (44.19%), Postives = 86/129 (66.67%), Query Frame = 2
Query:  227 RKKLDTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMSSLHLKHCVQSYNVFDFLRDIVSRVPD-YSHGHSDATSEDRSISKRRK--AAGDECNDSDEESKRSRM 604
            +KK + RFP ARIKKIMQ DE++GK+A AVPV++S+ALELFL+ L  +  ++T  R AKTM++ HLK C++    FDFL+D+V+ VPD    G  + T  D+   + RK  ++G +   +  +SK  ++
Sbjct:    5 KKKYNARFPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCIELEQQFDFLKDLVASVPDMQGDGEDNHTDGDKGPRRGRKPGSSGRKNGGTGSKSKDKKL 133          
BLAST of CN192217 vs. ExPASy Swiss-Prot
Match: NC2A_HUMAN (Dr1-associated corepressor OS=Homo sapiens GN=DRAP1 PE=1 SV=3)

HSP 1 Score: 110.153 bits (274), Expect = 9.128e-24
Identity = 53/109 (48.62%), Postives = 75/109 (68.81%), Query Frame = 2
Query:  227 RKKLDTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMSSLHLKHCVQSYNVFDFLRDIVSRVPD-YSHGHSDATSEDRSISKRRK 550
            +KK + RFP ARIKKIMQ DE++GK+A AVPV++S+ALELFL+ L  +  ++T  R AKTM++ HLK C++    FDFL+D+V+ VPD    G  +    D+   + RK
Sbjct:    5 KKKYNARFPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCIELEQQFDFLKDLVASVPDMQGDGEDNHMDGDKGARRGRK 113          
BLAST of CN192217 vs. ExPASy Swiss-Prot
Match: NC2A_MOUSE (Dr1-associated corepressor OS=Mus musculus GN=Drap1 PE=2 SV=3)

HSP 1 Score: 109.768 bits (273), Expect = 1.192e-23
Identity = 53/109 (48.62%), Postives = 75/109 (68.81%), Query Frame = 2
Query:  227 RKKLDTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMSSLHLKHCVQSYNVFDFLRDIVSRVPD-YSHGHSDATSEDRSISKRRK 550
            +KK + RFP ARIKKIMQ DE++GK+A AVPV++S+ALELFL+ L  +  ++T  R AKTM++ HLK C++    FDFL+D+V+ VPD    G  +    D+   + RK
Sbjct:    5 KKKYNARFPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCIELEQQFDFLKDLVASVPDMQGDGEDNHVDGDKGPRRGRK 113          
BLAST of CN192217 vs. ExPASy Swiss-Prot
Match: NC2A_BOVIN (Dr1-associated corepressor OS=Bos taurus GN=DRAP1 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.192e-23
Identity = 53/110 (48.18%), Postives = 76/110 (69.09%), Query Frame = 2
Query:  227 RKKLDTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMSSLHLKHCVQSYNVFDFLRDIVSRVPD-YSHGHSDATSEDRSISKRRKA 553
            +KK + RFP ARIKKIMQ DE++GK+A AVPV++S+ALELFL+ L  +  ++T  R AKTM++ HLK C++    FDFL+D+V+ VPD    G  +    D+   + RK+
Sbjct:    5 KKKYNARFPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCIELEQQFDFLKDLVASVPDMQGDGEDNHMDGDKGPRRGRKS 114          
BLAST of CN192217 vs. ExPASy Swiss-Prot
Match: NC2A_DICDI (Dr1-associated corepressor homolog OS=Dictyostelium discoideum GN=drap1 PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.936e-22
Identity = 53/123 (43.09%), Postives = 78/123 (63.41%), Query Frame = 2
Query:  224 MRKKLDTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMSSLHLKHCVQSYNVFDFLRDIVSRVPDYSHGHSDATSEDRSISKRRKAAGDECNDSDEESK 592
            M+KK  T+FP ARIKKIMQ DE+VGKIA A P+L+S+ LELF+ DL  +T +IT  +  K +S  HLK C++  + FDFL +IV R+PD          ++    + +K  G++  + +EE +
Sbjct:    1 MKKKYKTKFPMARIKKIMQKDEEVGKIASATPILISQCLELFMADLVMKTCKITQAKKGKVISVNHLKECIKQESTFDFLTEIVDRIPD---------DKNEKRGRPKKTEGEDGGEEEEEEE 114          
BLAST of CN192217 vs. ExPASy Swiss-Prot
Match: DPB3_SCHPO (DNA polymerase epsilon subunit C OS=Schizosaccharomyces pombe GN=dpb3 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.123e-20
Identity = 48/83 (57.83%), Postives = 61/83 (73.49%), Query Frame = 2
Query:  242 TRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMSSLHLKHCVQSYNVFDFLRDIVSRVPD 490
            +RFP ARIKKIMQAD+DVGK+A   PV++SKALELF+Q +   + + T    AK ++  HLKH VQS   FDFL+DIV +VPD
Sbjct:   22 SRFPVARIKKIMQADQDVGKVAQVTPVIMSKALELFMQSIIQESCKQTRLHQAKRVTVSHLKHAVQSVEQFDFLQDIVEKVPD 104          
BLAST of CN192217 vs. ExPASy Swiss-Prot
Match: DPB3_YARLI (DNA polymerase epsilon subunit C OS=Yarrowia lipolytica GN=DPB3 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.572e-18
Identity = 49/112 (43.75%), Postives = 68/112 (60.71%), Query Frame = 2
Query:  230 KKLDTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMSSLHLKHCVQSYNVFDFLRDIVSRVPDYSHGHSDATSEDRSISKRRKAAGDE 565
            +++ TRFP ARIKK+MQ+D+D+GK+A A P  V+KALELF+  L + T      R +K +S  HLK  V     FDFL+DIVS+ PD     + AT E+    +R +    E
Sbjct:    6 REIKTRFPVARIKKLMQSDDDIGKVAQATPTAVAKALELFMISLIEETCNQARMRNSKRVSPSHLKQAVLETEQFDFLQDIVSKHPD---AVAPATGEEEQPKRRGRKPAQE 114          
BLAST of CN192217 vs. ExPASy Swiss-Prot
Match: NCB1_YEAST (Negative cofactor 2 complex subunit alpha OS=Saccharomyces cerevisiae GN=BUR6 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.785e-11
Identity = 31/79 (39.24%), Postives = 52/79 (65.82%), Query Frame = 2
Query:  233 KLDTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMSSLHLKHCVQSYNVFDFLRD 469
            ++ T FP A++KKIMQ DED+GK++ A PV+  ++LE F+  L  ++ E+   +G K +++  LK  + +   FDFLR+
Sbjct:   48 RIKTHFPPAKVKKIMQTDEDIGKVSQATPVIAGRSLEFFIALLVKKSGEMARGQGTKRITAEILKKTILNDEKFDFLRE 126          
The following BLAST results are available for this feature:
BLAST of CN192217 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
NC2A_RAT1.839e-2444.19Dr1-associated corepressor OS=Rattus norvegicus GN... [more]
NC2A_HUMAN9.128e-2448.62Dr1-associated corepressor OS=Homo sapiens GN=DRAP... [more]
NC2A_MOUSE1.192e-2348.62Dr1-associated corepressor OS=Mus musculus GN=Drap... [more]
NC2A_BOVIN1.192e-2348.18Dr1-associated corepressor OS=Bos taurus GN=DRAP1 ... [more]
NC2A_DICDI2.936e-2243.09Dr1-associated corepressor homolog OS=Dictyosteliu... [more]
DPB3_SCHPO6.123e-2057.83DNA polymerase epsilon subunit C OS=Schizosaccharo... [more]
DPB3_YARLI2.572e-1843.75DNA polymerase epsilon subunit C OS=Yarrowia lipol... [more]
NCB1_YEAST6.785e-1139.24Negative cofactor 2 complex subunit alpha OS=Sacch... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0006I16_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0006I16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN192217 ID=CN192217; Name=CN192217; organism=Citrus sinensis; type=EST; length=627bp
GAGGCAAAGTTGTACGGACGGATATTCCGTTGTAACGAGACTCTGTATTT
TTTCTGGGCAACAAAAAAGAAAATACTATCGGATCTGAGATGGGTTTTGT
TTACTAGATTTTATGTGATCATTTTTTGCATGTTACCAATATTCTTTGGA
CAAAAATAAATTTAATCGACTAAGAATATAGTTTTTTTTTTTTTTTAACT
TTAATGCTCCAAATTTTTACACTATGAGGAAGAAGCTCGATACACGTTTT
CCAGCTGCTCGAATTAAAAAGATAATGCAAGCTGATGAGGATGTTGGGAA
GATAGCATTGGCTGTCCCTGTTCTAGTTTCAAAAGCTTTGGAATTATTTT
TGCAAGACCTTTGTGATCGTACATATGAGATAACCCTTCAGAGAGGAGCA
AAGACAATGAGTTCCTTGCATTTAAAACATTGTGTTCAGAGCTATAATGT
GTTTGATTTTCTGAGGGATATTGTCAGCCGAGTTCCAGACTATAGTCATG
GTCATTCTGATGCTACTTCTGAGGATCGATCCATTTCTAAGAGAAGGAAA
GCTGCTGGTGATGAATGCAATGACAGTGATGAAGAGTCAAAGAGGAGCAG
GATGCATGAGATGGGCCATGTTACTGG
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