CX301981

Overview
NameCX301981
Unique NameCX301981
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length476
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX301981 vs. ExPASy Swiss-Prot
Match: SIZ1_ARATH (E3 SUMO-protein ligase SIZ1 OS=Arabidopsis thaliana GN=SIZ1 PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 5.677e-12
Identity = 51/149 (34.23%), Postives = 75/149 (50.34%), Query Frame = 1 
Query:   49 WSYPSGTQAGSSFQVFDAVSNVSDVFVDLDHPS-VACSLPMNGYKSPSKSTLTCDSGVLDSPVCHSNIDIGEQLIDISEQLIENTLPFVREDPSIGHFVPSQPTDLFSESN-------SGNYTSENWISLRLGSTCADTGSHSQSATTN 471
            WS+PS T     FQ+F + ++VS   V L H S + CS  +NG  + +  T      V+      S  + G         L++N L F R+DPS+  F+P++P D  ++S        S    SE+WISLRLG +   +G+H   ATTN
Sbjct:  670 WSFPSETPEAPGFQLFRSDADVSGGLVGLHHHSPLNCSPEINGGYTMAPETSMASVPVVPGSTGRSEANDG---------LVDNPLAFGRDDPSLQIFLPTKP-DASAQSGFKNQADMSNGLRSEDWISLRLGDSA--SGNHGDPATTN 806
The following BLAST results are available for this feature:
BLAST of CX301981 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
SIZ1_ARATH5.677e-1234.23E3 SUMO-protein ligase SIZ1 OS=Arabidopsis thalian... [more]
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Properties
Property NameValue
Genbank descriptionC08015G10SK PhyRootSw1 Citrus sinensis cDNA clone C08015G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX301981 ID=CX301981; Name=CX301981; organism=Citrus sinensis; type=EST; length=476bp
CTGTTTTGGTCCTTTAATGGAACTGTTGATGCTGTAGGGTTGTCTAACTG
GTCATATCCGTCTGGCACGCAAGCGGGATCTAGCTTTCAAGTGTTTGATG
CAGTTTCAAATGTTTCTGATGTTTTTGTCGATTTGGATCATCCGTCAGTA
GCATGCTCTCTTCCAATGAATGGATATAAATCTCCTTCTAAATCAACTCT
AACATGTGATAGTGGGGTCCTAGATTCTCCTGTCTGTCATTCTAATATTG
ACATCGGTGAGCAGTTAATAGACATCAGTGAGCAGTTAATAGAGAATACC
TTGCCTTTTGTGAGAGAGGACCCCTCTATAGGACATTTCGTTCCTAGTCA
GCCAACTGATTTGTTTTCAGAGTCTAATTCAGGAAATTACACTTCTGAGA
ATTGGATTTCTCTTAGGCTGGGTAGCACCTGTGCCGATACTGGGTCTCAT
TCCCAGTCTGCTACCACTAATGCACT
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