CN192198

Overview
NameCN192198
Unique NameCN192198
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length421
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2633 contig Csv1_Contig2633:126..546. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN192198 vs. ExPASy Swiss-Prot
Match: PGKY_TOBAC (Phosphoglycerate kinase, cytosolic OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 5.293e-33
Identity = 72/74 (97.30%), Postives = 73/74 (98.65%), Query Frame = -3
Query:  198 EFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDDA 419
            EFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLA+KMSHISTGGGASLELLEGK LPGVLALDDA
Sbjct:  328 EFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLAEKMSHISTGGGASLELLEGKPLPGVLALDDA 401          
BLAST of CN192198 vs. ExPASy Swiss-Prot
Match: PGKY_WHEAT (Phosphoglycerate kinase, cytosolic OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 6.471e-31
Identity = 67/74 (90.54%), Postives = 72/74 (97.30%), Query Frame = -3
Query:  198 EFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDDA 419
            EF+KFAAGT+AIAK+LAEL+GKGVTTIIGGGDSVAAVEK GLADKMSHISTGGGASLELLEGK LPGVLALD+A
Sbjct:  328 EFEKFAAGTDAIAKQLAELTGKGVTTIIGGGDSVAAVEKAGLADKMSHISTGGGASLELLEGKPLPGVLALDEA 401          
BLAST of CN192198 vs. ExPASy Swiss-Prot
Match: PGKH_TOBAC (Phosphoglycerate kinase, chloroplastic OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 3.211e-30
Identity = 66/74 (89.19%), Postives = 70/74 (94.59%), Query Frame = -3
Query:  198 EFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDDA 419
            EFDKFA GTEAIAKKLA+LSGKGVTTIIGGGDSVAAVEKVG+A  MSHISTGGGASLELLEGK LPGV+ALD+A
Sbjct:  402 EFDKFAVGTEAIAKKLADLSGKGVTTIIGGGDSVAAVEKVGVASVMSHISTGGGASLELLEGKVLPGVIALDEA 475          
BLAST of CN192198 vs. ExPASy Swiss-Prot
Match: PGKH_WHEAT (Phosphoglycerate kinase, chloroplastic OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 2.719e-29
Identity = 65/73 (89.04%), Postives = 69/73 (94.52%), Query Frame = -3
Query:  201 EFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 419
            EFDKFA GTE+IAKKLAELS KGVTTIIGGGDSVAAVEKVG+AD MSHISTGGGASLELLEGK LPGV+ALD+
Sbjct:  399 EFDKFAVGTESIAKKLAELSKKGVTTIIGGGDSVAAVEKVGVADVMSHISTGGGASLELLEGKELPGVVALDE 471          
BLAST of CN192198 vs. ExPASy Swiss-Prot
Match: PGK_SYNS3 (Phosphoglycerate kinase OS=Synechococcus sp. (strain CC9311) GN=pgk PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 7.910e-29
Identity = 65/74 (87.84%), Postives = 66/74 (89.19%), Query Frame = -3
Query:  198 EFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDDA 419
            EFDKFAAGT AIA  LAELSGKG  TIIGGGDSVAAVEK GLA+KMSHISTGGGASLELLEGK LPGV ALDDA
Sbjct:  328 EFDKFAAGTNAIATTLAELSGKGCCTIIGGGDSVAAVEKAGLAEKMSHISTGGGASLELLEGKVLPGVAALDDA 401          
BLAST of CN192198 vs. ExPASy Swiss-Prot
Match: PGK_PROMM (Phosphoglycerate kinase OS=Prochlorococcus marinus (strain MIT 9313) GN=pgk PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.762e-28
Identity = 64/74 (86.49%), Postives = 66/74 (89.19%), Query Frame = -3
Query:  198 EFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDDA 419
            EFDKFAAGT AIA  LA+LSGKG  TIIGGGDSVAAVEK GLA+KMSHISTGGGASLELLEGK LPGV ALDDA
Sbjct:  328 EFDKFAAGTNAIATTLADLSGKGCCTIIGGGDSVAAVEKAGLAEKMSHISTGGGASLELLEGKVLPGVAALDDA 401          
BLAST of CN192198 vs. ExPASy Swiss-Prot
Match: PGK_PROM3 (Phosphoglycerate kinase OS=Prochlorococcus marinus (strain MIT 9303) GN=pgk PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.762e-28
Identity = 64/74 (86.49%), Postives = 66/74 (89.19%), Query Frame = -3
Query:  198 EFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDDA 419
            EFDKFAAGT AIA  LA+LSGKG  TIIGGGDSVAAVEK GLA+KMSHISTGGGASLELLEGK LPGV ALDDA
Sbjct:  328 EFDKFAAGTNAIATTLADLSGKGCCTIIGGGDSVAAVEKAGLAEKMSHISTGGGASLELLEGKVLPGVAALDDA 401          
BLAST of CN192198 vs. ExPASy Swiss-Prot
Match: PGK_NOSP7 (Phosphoglycerate kinase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=pgk PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 3.006e-28
Identity = 63/74 (85.14%), Postives = 66/74 (89.19%), Query Frame = -3
Query:  198 EFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDDA 419
            EFDKFAAGTEAIA  LAE+   G TTIIGGGDSVAAVEKVGLAD+MSHISTGGGASLELLEGK LPG+ ALDDA
Sbjct:  327 EFDKFAAGTEAIAHTLAEIGKTGTTTIIGGGDSVAAVEKVGLADQMSHISTGGGASLELLEGKVLPGIAALDDA 400          
BLAST of CN192198 vs. ExPASy Swiss-Prot
Match: PGKH_SPIOL (Phosphoglycerate kinase, chloroplastic (Fragment) OS=Spinacia oleracea PE=2 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 3.006e-28
Identity = 63/74 (85.14%), Postives = 69/74 (93.24%), Query Frame = -3
Query:  198 EFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDDA 419
            EF+KFAAGTEAIAKKL E+S KG TTIIGGGDSVAAVEKVG+A+ MSHISTGGGASLELLEGK LPGVLAL++A
Sbjct:  355 EFEKFAAGTEAIAKKLEEISKKGATTIIGGGDSVAAVEKVGVAEAMSHISTGGGASLELLEGKQLPGVLALNEA 428          
BLAST of CN192198 vs. ExPASy Swiss-Prot
Match: PGKH_ARATH (Phosphoglycerate kinase, chloroplastic OS=Arabidopsis thaliana GN=At1g56190 PE=1 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 3.006e-28
Identity = 64/74 (86.49%), Postives = 68/74 (91.89%), Query Frame = -3
Query:  198 EFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDDA 419
            E +KFAAGTEAIA KLAELS KGVTTIIGGGDSVAAVEKVG+A  MSHISTGGGASLELLEGK LPGV+ALD+A
Sbjct:  400 EMEKFAAGTEAIANKLAELSEKGVTTIIGGGDSVAAVEKVGVAGVMSHISTGGGASLELLEGKVLPGVIALDEA 473          
The following BLAST results are available for this feature:
BLAST of CN192198 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PGKY_TOBAC5.293e-3397.30Phosphoglycerate kinase, cytosolic OS=Nicotiana ta... [more]
PGKY_WHEAT6.471e-3190.54Phosphoglycerate kinase, cytosolic OS=Triticum aes... [more]
PGKH_TOBAC3.211e-3089.19Phosphoglycerate kinase, chloroplastic OS=Nicotian... [more]
PGKH_WHEAT2.719e-2989.04Phosphoglycerate kinase, chloroplastic OS=Triticum... [more]
PGK_SYNS37.910e-2987.84Phosphoglycerate kinase OS=Synechococcus sp. (stra... [more]
PGK_PROMM1.762e-2886.49Phosphoglycerate kinase OS=Prochlorococcus marinus... [more]
PGK_PROM31.762e-2886.49Phosphoglycerate kinase OS=Prochlorococcus marinus... [more]
PGK_NOSP73.006e-2885.14Phosphoglycerate kinase OS=Nostoc punctiforme (str... [more]
PGKH_SPIOL3.006e-2885.14Phosphoglycerate kinase, chloroplastic (Fragment) ... [more]
PGKH_ARATH3.006e-2886.49Phosphoglycerate kinase, chloroplastic OS=Arabidop... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0006I06_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0006I06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN192198 ID=CN192198; Name=CN192198; organism=Citrus sinensis; type=EST; length=421bp
TTTTTTTTTTTTTTTTTCCAAAAAAATGCATCACCATTGATGCCTGTGAA
AAAAAATTTATTTTTACTCTTACAGCATCTACAAAACCAACTCTAATGAT
AAAGTTTAACTTTTATCCACTCTGGGCTGACAACCAGCCACACATACAAC
TCTGGAAATGGCACATTTAAAAAAGGAAAGTCCAGGAACTGGGTTTAAGC
ATCATCAAGAGCAAGCACACCAGGGAGTGTTTTGCCCTCAAGGAGCTCTA
AGCTGGCTCCACCTCCAGTGGAGATATGGCTCATCTTGTCAGCCAGACCA
ACCTTCTCTACGGCTGCAACTGAGTCACCTCCTCCAATGATTGTGGTCAC
TCCCTTCCCGCTGAGCTCCGCAAGCTTCTTGGCAATTGCCTCAGTGCCAG
CAGCAAATTTATCAAATTCAA
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