CN192195

Overview
NameCN192195
Unique NameCN192195
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length556
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2890 contig Csv1_Contig2890:1..562. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN192195 vs. ExPASy Swiss-Prot
Match: C3H67_ARATH (Zinc finger CCCH domain-containing protein 67 OS=Arabidopsis thaliana GN=At5g63260 PE=2 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 6.746e-14
Identity = 30/46 (65.22%), Postives = 40/46 (86.96%), Query Frame = 2 
Query:  383 GNQMRKRYPYPVRPDAQDCTFYMKTGTCKFGSNCKFNHPVRRKNQV 520
            G++ R    YPVRPD++DC+FYM+TG+CK+GS+CKFNHPVRRK Q+
Sbjct:   89 GSEKRMMMVYPVRPDSEDCSFYMRTGSCKYGSSCKFNHPVRRKLQI 134
[Close]
BLAST of CN192195 vs. ExPASy Swiss-Prot
Match: C3H43_ARATH (Zinc finger CCCH domain-containing protein 43 OS=Arabidopsis thaliana GN=At3g48440 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.314e-12
Identity = 27/39 (69.23%), Postives = 35/39 (89.74%), Query Frame = 2 
Query:  410 YPVRPDAQDCTFYMKTGTCKFGSNCKFNHPVRRKNQVIK 526
            YPVRP A+DC+FYM+TG+CKFGS+CKFNHP+ RK Q+ +
Sbjct:  107 YPVRPGAEDCSFYMRTGSCKFGSSCKFNHPLARKFQIAR 145
The following BLAST results are available for this feature:
BLAST of CN192195 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
C3H67_ARATH6.746e-1465.22Zinc finger CCCH domain-containing protein 67 OS=A... [more]
C3H43_ARATH6.314e-1269.23Zinc finger CCCH domain-containing protein 43 OS=A... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0006I04_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0006I04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN192195 ID=CN192195; Name=CN192195; organism=Citrus sinensis; type=EST; length=556bp
GCTTCATCAATCATCATTTTCGCTCTTTTGCAAAAGTAGGGTTTTGAAAT
GTGATAACAAAATGGAACTCTCTGAGCTAATTTCCGTACCAAATCTTAAT
CATGAAAAAACAAAATTCGAACTAGGGTTACAATCTTCCTCTCCGAAATC
CGATCTCGATCCTCCACCGTCCGATCTTGATTACACTGCTGGAATTGAGG
AAGAGCTGCGAAATCTCGATTTGAGAGAGGCGGAAGAGATAGATTCAATC
AAAGCAGCGGAAATAGAAATAGTAGTTGAAGAAGAAGACGAAGACGAAGA
GGAAGAGGAAGAAAGCGAGAGTGATGAAAACAATAAAAGTAACATTATAG
TTCAGAATGAGATTCAAAATGAGAATGAGTATGGAAATCAAATGAGAAAA
AGGTATCCCTATCCAGTGAGACCCGACGCTCAAGATTGTACTTTTTATAT
GAAAACAGGTACCTGCAAGTTTGGGTCCAATTGTAAGTTTAATCATCCTG
TTCGTAGAAAAAACCAGGTAATAAAAATTAAATTTTAAATTTACCCGATT
AGTTTT
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