CN192151

Overview
NameCN192151
Unique NameCN192151
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length759
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2885 contig Csv1_Contig2885:1..759. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN192151 vs. ExPASy Swiss-Prot
Match: PTBP3_ARATH (Polypyrimidine tract-binding protein homolog 3 OS=Arabidopsis thaliana GN=At1g43190 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 4.756e-42
Identity = 85/96 (88.54%), Postives = 90/96 (93.75%), Query Frame = 2 
Query:  125 MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDE 412
            M E SKV+HVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDV SA++ALQF+TNVQPTIRGRNVYVQFSSHQELTT+EQN  GR DE
Sbjct:    1 MAESSKVVHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVSSAVSALQFFTNVQPTIRGRNVYVQFSSHQELTTIEQNIHGREDE 96

HSP 2 Score: 131.339 bits (329), Expect = 5.494e-30
Identity = 64/95 (67.37%), Postives = 75/95 (78.95%), Query Frame = 1 
Query:  412 GFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGGMYAPGARAVAFPQVGST 696
            GFQALIQYQ++  A  AR++LQGRNIYDGCCQLDIQFSNL+ELQVNYNN+RSRD+TNPNLPAEQKGR S   Y + G         VA+PQ+ +T
Sbjct:  138 GFQALIQYQVQQCAASARTALQGRNIYDGCCQLDIQFSNLEELQVNYNNDRSRDYTNPNLPAEQKGRSSHPCYGDTG---------VAYPQMANT 223
[Close]
BLAST of CN192151 vs. ExPASy Swiss-Prot
Match: PTBP2_ARATH (Polypyrimidine tract-binding protein homolog 2 OS=Arabidopsis thaliana GN=At5g53180 PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.022e-19
Identity = 34/96 (35.42%), Postives = 62/96 (64.58%), Query Frame = 2 
Query:  134 PSKVIHVRNVGHEISENDLLQLFQPFGVI--TKLVMLRAKNQALLQMQDVPSAINALQFY-TNVQPT-IRGRNVYVQFSSHQELTTMEQNAQGRGD 409
            PSKV+H+RN+  E +E +L++L +PFG +  TK  +   +NQA ++ +D+  AI  + +Y ++ +P  +RG+ VY+Q+S+ QE+   +  A   G+
Sbjct:   16 PSKVLHLRNLPWECTEEELIELGKPFGTVVNTKCNVGANRNQAFIEFEDLNQAIQMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVVGN 111

HSP 2 Score: 48.9062 bits (115), Expect = 9.022e-19
Identity = 27/68 (39.71%), Postives = 39/68 (57.35%), Query Frame = 1 
Query:  412 GFQALIQYQLRPSAVVARSSLQGRNIYD-------GCCQLDIQFSNLDELQVNYNNERSRDFTNPNLP 594
            G+QAL+Q+    +A  A+ +L GR+I         G C L I +S   +L V + + RSRD+TNP LP
Sbjct:  151 GYQALVQFTDAETATAAKLALDGRSIPRYLLAETVGQCSLKITYSAHTDLTVKFQSHRSRDYTNPYLP 218
[Close]
BLAST of CN192151 vs. ExPASy Swiss-Prot
Match: PTBP1_RAT (Polypyrimidine tract-binding protein 1 OS=Rattus norvegicus GN=Ptbp1 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.916e-17
Identity = 39/101 (38.61%), Postives = 66/101 (65.35%), Query Frame = 2 
Query:  134 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEDFKHLSSI 436
            PS+VIHVR +  +++E +++ L  PFG +T L+ML+ KNQA ++M    +A   + +YT+V P +RG+ +Y+QFS+H+EL T     Q R     + ++S+
Sbjct:   56 PSRVIHVRKLPSDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMSTEEAANTMVNYYTSVAPVLRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSV 156

HSP 2 Score: 72.4034 bits (176), Expect = 3.029e-12
Identity = 43/93 (46.24%), Postives = 56/93 (60.22%), Query Frame = 1 
Query:  415 FQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGGMYAPGARAVAFPQVGS 693
            FQAL+QY    SA  A+ SL G+NIY+ CC L I FS L  L V YNN++SRD+T P+LP+    +PS    + A    APG  + A P  G+
Sbjct:  221 FQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGD-SQPSLD-QTMAAAFGAPGIMS-ASPYAGA 310
[Close]
BLAST of CN192151 vs. ExPASy Swiss-Prot
Match: PTBP1_PIG (Polypyrimidine tract-binding protein 1 OS=Sus scrofa GN=PTBP1 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 9.032e-17
Identity = 38/101 (37.62%), Postives = 66/101 (65.35%), Query Frame = 2 
Query:  134 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEDFKHLSSI 436
            PS+VIH+R +  +++E +++ L  PFG +T L+ML+ KNQA ++M    +A   + +YT+V P +RG+ +Y+QFS+H+EL T     Q R     + ++S+
Sbjct:   57 PSRVIHIRKLPSDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSV 157

HSP 2 Score: 72.4034 bits (176), Expect = 3.029e-12
Identity = 43/93 (46.24%), Postives = 56/93 (60.22%), Query Frame = 1 
Query:  415 FQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGGMYAPGARAVAFPQVGS 693
            FQAL+QY    SA  A+ SL G+NIY+ CC L I FS L  L V YNN++SRD+T P+LP+    +PS    + A    APG  + A P  G+
Sbjct:  222 FQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGD-NQPSLD-QTMAAAFGAPGIMS-ASPYAGA 311
[Close]
BLAST of CN192151 vs. ExPASy Swiss-Prot
Match: PTBP1_BOVIN (Polypyrimidine tract-binding protein 1 OS=Bos taurus GN=PTBP1 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.180e-16
Identity = 38/101 (37.62%), Postives = 66/101 (65.35%), Query Frame = 2 
Query:  134 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEDFKHLSSI 436
            PS+VIH+R +  +++E +++ L  PFG +T L+ML+ KNQA ++M    +A   + +YT+V P +RG+ +Y+QFS+H+EL T     Q R     + ++S+
Sbjct:   57 PSRVIHIRKLPGDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMHTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSV 157

HSP 2 Score: 73.9442 bits (180), Expect = 1.041e-12
Identity = 38/89 (42.70%), Postives = 49/89 (55.06%), Query Frame = 1 
Query:  415 FQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGGMYAPGARAVAFP 681
            FQAL+QY    SA  A+ SL G+NIY+ CC L I FS L  L V YNN++SRD+T P+LP+           + A G+  P       P
Sbjct:  222 FQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQTMAAAFGLSVPNVHGALAP 310
[Close]
BLAST of CN192151 vs. ExPASy Swiss-Prot
Match: PTBP1_MOUSE (Polypyrimidine tract-binding protein 1 OS=Mus musculus GN=Ptbp1 PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.541e-16
Identity = 39/101 (38.61%), Postives = 66/101 (65.35%), Query Frame = 2 
Query:  134 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEDFKHLSSI 436
            PS+VIHVR +  +++E +++ L  PFG +T L+ML+ KNQA ++M    +A   + +YT+V P +RG+ +Y+QFS+H+EL T     Q R     + ++S+
Sbjct:   56 PSRVIHVRKLPSDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVAPVLRGQPIYIQFSNHKELKTDSSPNQVRAQAALQAVNSV 156

HSP 2 Score: 73.9442 bits (180), Expect = 1.041e-12
Identity = 38/89 (42.70%), Postives = 49/89 (55.06%), Query Frame = 1 
Query:  415 FQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGGMYAPGARAVAFP 681
            FQAL+QY    SA  A+ SL G+NIY+ CC L I FS L  L V YNN++SRD+T P+LP+           + A G+  P       P
Sbjct:  221 FQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQTMAAAFGLSVPNVHGALAP 309
[Close]
BLAST of CN192151 vs. ExPASy Swiss-Prot
Match: PTBP1_HUMAN (Polypyrimidine tract-binding protein 1 OS=Homo sapiens GN=PTBP1 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.541e-16
Identity = 38/101 (37.62%), Postives = 66/101 (65.35%), Query Frame = 2 
Query:  134 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEDFKHLSSI 436
            PS+VIH+R +  +++E +++ L  PFG +T L+ML+ KNQA ++M    +A   + +YT+V P +RG+ +Y+QFS+H+EL T     Q R     + ++S+
Sbjct:   57 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSV 157

HSP 2 Score: 73.9442 bits (180), Expect = 1.041e-12
Identity = 38/89 (42.70%), Postives = 49/89 (55.06%), Query Frame = 1 
Query:  415 FQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGGMYAPGARAVAFP 681
            FQAL+QY    SA  A+ SL G+NIY+ CC L I FS L  L V YNN++SRD+T P+LP+           + A G+  P       P
Sbjct:  222 FQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQTMAAAFGLSVPNVHGALAP 310
[Close]
BLAST of CN192151 vs. ExPASy Swiss-Prot
Match: ROD1_RAT (Regulator of differentiation 1 OS=Rattus norvegicus GN=Rod1 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.454e-15
Identity = 36/101 (35.64%), Postives = 65/101 (64.36%), Query Frame = 2 
Query:  134 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEDFKHLSSI 436
            PS+V+H+R +  +++E +++ L  PFG +T L+ML+ K+QA L+M    +A+  + +YT V P +R + VY+Q+S+H+EL T     Q R     + +S++
Sbjct:   28 PSRVLHLRKIPCDVTEAEVISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMINYYTPVTPHLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSAV 128

HSP 2 Score: 73.1738 bits (178), Expect = 1.776e-12
Identity = 44/107 (41.12%), Postives = 59/107 (55.14%), Query Frame = 1 
Query:  415 FQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPS-----QSGYSEAGGMYAP------GARAVAFPQVGSTQI 702
            FQAL+QY    +A  A+ +L G+NIY+ CC L I FS L  L V YNN++SRDFT  +LP    G+PS      + +   G M +P       A A+AFPQ     +
Sbjct:  191 FQALLQYADPVNAQYAKMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGD-GQPSLEPPMAAAFGAPGIMSSPYAGAAGFAPAIAFPQAAGLSV 296
[Close]
BLAST of CN192151 vs. ExPASy Swiss-Prot
Match: ROD1_MOUSE (Regulator of differentiation 1 OS=Mus musculus GN=Rod1 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.454e-15
Identity = 36/101 (35.64%), Postives = 65/101 (64.36%), Query Frame = 2 
Query:  134 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEDFKHLSSI 436
            PS+V+H+R +  +++E +++ L  PFG +T L+ML+ K+QA L+M    +A+  + +YT V P +R + VY+Q+S+H+EL T     Q R     + +S++
Sbjct:   28 PSRVLHLRKIPCDVTEAEVISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMINYYTPVTPHLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSAV 128

HSP 2 Score: 73.1738 bits (178), Expect = 1.776e-12
Identity = 44/107 (41.12%), Postives = 59/107 (55.14%), Query Frame = 1 
Query:  415 FQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPS-----QSGYSEAGGMYAP------GARAVAFPQVGSTQI 702
            FQAL+QY    +A  A+ +L G+NIY+ CC L I FS L  L V YNN++SRDFT  +LP    G+PS      + +   G M +P       A A+AFPQ     +
Sbjct:  191 FQALLQYADPVNAQYAKMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGD-GQPSLEPPMAAAFGAPGIMSSPYAGAAGFAPAIAFPQAAGLSV 296
[Close]
BLAST of CN192151 vs. ExPASy Swiss-Prot
Match: ROD1_HUMAN (Regulator of differentiation 1 OS=Homo sapiens GN=ROD1 PE=1 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 1.104e-14
Identity = 35/101 (34.65%), Postives = 65/101 (64.36%), Query Frame = 2 
Query:  134 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEDFKHLSSI 436
            PS+V+H+R +  +++E +++ L  PFG +T L+ML+ K+QA L+M    +A+  + +YT + P +R + VY+Q+S+H+EL T     Q R     + +S++
Sbjct:   57 PSRVLHLRKIPCDVTEAEIISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMVNYYTPITPHLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSAV 157

HSP 2 Score: 71.633 bits (174), Expect = 5.166e-12
Identity = 43/101 (42.57%), Postives = 58/101 (57.43%), Query Frame = 1 
Query:  415 FQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPS-----QSGYSEAGGMYAPGARAVAF-PQVGSTQ 699
            FQAL+QY    +A  A+ +L G+NIY+ CC L I FS L  L V YNN++SRDFT  +LP    G+PS      + +   G + +P A A  F P +G  Q
Sbjct:  220 FQALLQYADPVNAHYAKMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGD-GQPSLEPPMAAAFGAPGIISSPYAGAAGFAPAIGFPQ 319
The following BLAST results are available for this feature:
BLAST of CN192151 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
PTBP3_ARATH4.756e-4288.54Polypyrimidine tract-binding protein homolog 3 OS=... [more]
PTBP2_ARATH9.022e-1935.42Polypyrimidine tract-binding protein homolog 2 OS=... [more]
PTBP1_RAT6.916e-1738.61Polypyrimidine tract-binding protein 1 OS=Rattus n... [more]
PTBP1_PIG9.032e-1737.62Polypyrimidine tract-binding protein 1 OS=Sus scro... [more]
PTBP1_BOVIN1.180e-1637.62Polypyrimidine tract-binding protein 1 OS=Bos taur... [more]
PTBP1_MOUSE1.541e-1638.61Polypyrimidine tract-binding protein 1 OS=Mus musc... [more]
PTBP1_HUMAN1.541e-1637.62Polypyrimidine tract-binding protein 1 OS=Homo sap... [more]
ROD1_RAT8.454e-1535.64Regulator of differentiation 1 OS=Rattus norvegicu... [more]
ROD1_MOUSE8.454e-1535.64Regulator of differentiation 1 OS=Mus musculus GN=... [more]
ROD1_HUMAN1.104e-1434.65Regulator of differentiation 1 OS=Homo sapiens GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0006G21_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0006G21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN192151 ID=CN192151; Name=CN192151; organism=Citrus sinensis; type=EST; length=759bp
CCGCATCGACTCTCTATATCAGGCACAACATTAACATGCGAACAAGCACT
CGATCTACTTCAATTCACTTCTAATTTTTCTCCCTCTCTCTCCTCTCTTC
CTCTCTGTCTCAGTGTGATTTAAGATGACAGAGCCGTCCAAGGTTATTCA
CGTTCGCAATGTGGGACACGAGATTTCTGAAAATGATTTACTTCAGCTAT
TCCAACCATTTGGAGTCATAACTAAGCTTGTGATGCTTCGTGCAAAAAAT
CAGGCTCTTCTCCAAATGCAAGATGTTCCTTCAGCCATCAATGCTCTGCA
ATTTTACACGAATGTGCAGCCAACCATCAGGGGAAGGAATGTTTATGTCC
AATTTTCATCACATCAGGAACTAACAACAATGGAACAGAATGCTCAAGGA
CGAGGTGATGAGGATTTCAAGCACTTATCCAGTATCAATTACGTCCGAGT
GCTGTTGTAGCTAGAAGTTCTCTTCAGGGTCGTAATATTTATGATGGTTG
CTGTCAGCTGGACATTCAATTCTCAAACCTTGATGAGTTACAAGTGAACT
ACAATAATGAGCGATCAAGGGACTTCACAAATCCAAATCTTCCTGCAGAA
CAGAAAGGCAGACCCTCACAATCTGGGTACAGCGAAGCAGGAGGTATGTA
CGCTCCTGGAGCAAGGGCAGTTGCATTTCCACAGGTTGGTAGCACTCAGA
TCATGGTTTAAGTACTAAATAAGACAACTCTTTGTGAGCTGGTGGATATT
TGCTTCTAT
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