CN192111 | Citrus Genome Database

Overview


Name	CN192111
Unique Name	CN192111
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	410

Libraries


Library Name	Type
Washington Navel Orange Stored Fruit Rind cDNA Library	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig2673	contig	Csv1_Contig2673:628..1037.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CN192111 vs. ExPASy Swiss-Prot
Match: CALM_LILLO (Calmodulin OS=Lilium longiflorum PE=2 SV=2)

HSP 1 Score: 272.322 bits (695), Expect = 5.296e-73
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 3

Query:    6 TDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYE 410
            TDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYE
Sbjct:    6 TDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYE 140

HSP 2 Score: 66.6254 bits (161), Expect = 4.413e-11
Identity = 32/69 (46.38%), Postives = 45/69 (65.22%), Query Frame = 3

Query:   12 DQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARK 218
            D   E KEAF +FDKD +G I+  EL  VM +LG+  T+ E+ +MI E D DG+G I++ EF+ +M  K
Sbjct:   81 DSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 149

[Close]

BLAST of CN192111 vs. ExPASy Swiss-Prot
Match: CALM_EUPCH (Calmodulin OS=Euphorbia characias PE=2 SV=4)

HSP 1 Score: 272.322 bits (695), Expect = 5.296e-73
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 3

Query:    6 TDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYE 410
            TDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYE
Sbjct:    6 TDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYE 140

HSP 2 Score: 66.6254 bits (161), Expect = 4.413e-11
Identity = 32/69 (46.38%), Postives = 45/69 (65.22%), Query Frame = 3

Query:   12 DQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARK 218
            D   E KEAF +FDKD +G I+  EL  VM +LG+  T+ E+ +MI E D DG+G I++ EF+ +M  K
Sbjct:   81 DSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 149

[Close]

BLAST of CN192111 vs. ExPASy Swiss-Prot
Match: CALM_BRYDI (Calmodulin OS=Bryonia dioica PE=2 SV=2)

HSP 1 Score: 272.322 bits (695), Expect = 5.296e-73
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 3

Query:    6 TDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYE 410
            TDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYE
Sbjct:    6 TDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYE 140

HSP 2 Score: 66.6254 bits (161), Expect = 4.413e-11
Identity = 32/69 (46.38%), Postives = 45/69 (65.22%), Query Frame = 3

Query:   12 DQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARK 218
            D   E KEAF +FDKD +G I+  EL  VM +LG+  T+ E+ +MI E D DG+G I++ EF+ +M  K
Sbjct:   81 DSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 149

[Close]

BLAST of CN192111 vs. ExPASy Swiss-Prot
Match: CALM7_ARATH (Calmodulin-7 OS=Arabidopsis thaliana GN=CAM7 PE=1 SV=2)

HSP 1 Score: 272.322 bits (695), Expect = 5.296e-73
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 3

Query:    6 TDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYE 410
            TDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYE
Sbjct:    6 TDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYE 140

HSP 2 Score: 66.6254 bits (161), Expect = 4.413e-11
Identity = 32/69 (46.38%), Postives = 45/69 (65.22%), Query Frame = 3

Query:   12 DQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARK 218
            D   E KEAF +FDKD +G I+  EL  VM +LG+  T+ E+ +MI E D DG+G I++ EF+ +M  K
Sbjct:   81 DSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 149

[Close]

BLAST of CN192111 vs. ExPASy Swiss-Prot
Match: CALM3_PETHY (Calmodulin-related protein OS=Petunia hybrida GN=CAM53 PE=2 SV=2)

HSP 1 Score: 272.322 bits (695), Expect = 5.296e-73
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 3

Query:    6 TDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYE 410
            TDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYE
Sbjct:    6 TDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYE 140

HSP 2 Score: 68.9366 bits (167), Expect = 8.892e-12
Identity = 35/92 (38.04%), Postives = 51/92 (55.43%), Query Frame = 3

Query:   12 DQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNG 287
            D   E KEAF +FDKD +G I+  EL  VM +LG+  T+ E+ +MI E D DG+G I++ EF+ +M    +    EE  +       +  NG
Sbjct:   81 DSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMANRRRRRIEESKRSVNSNISRSNNG 172

[Close]

BLAST of CN192111 vs. ExPASy Swiss-Prot
Match: CALM1_PETHY (Calmodulin-1 OS=Petunia hybrida GN=CAM81 PE=2 SV=2)

HSP 1 Score: 272.322 bits (695), Expect = 5.296e-73
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 3

Query:    6 TDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYE 410
            TDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYE
Sbjct:    6 TDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYE 140

HSP 2 Score: 66.6254 bits (161), Expect = 4.413e-11
Identity = 32/69 (46.38%), Postives = 45/69 (65.22%), Query Frame = 3

Query:   12 DQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARK 218
            D   E KEAF +FDKD +G I+  EL  VM +LG+  T+ E+ +MI E D DG+G I++ EF+ +M  K
Sbjct:   81 DSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 149

[Close]

BLAST of CN192111 vs. ExPASy Swiss-Prot
Match: CALM1_DAUCA (Calmodulin-1/11/16 OS=Daucus carota GN=CAM-1 PE=2 SV=2)

HSP 1 Score: 272.322 bits (695), Expect = 5.296e-73
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 3

Query:    6 TDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYE 410
            TDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYE
Sbjct:    6 TDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYE 140

HSP 2 Score: 66.6254 bits (161), Expect = 4.413e-11
Identity = 32/69 (46.38%), Postives = 45/69 (65.22%), Query Frame = 3

Query:   12 DQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARK 218
            D   E KEAF +FDKD +G I+  EL  VM +LG+  T+ E+ +MI E D DG+G I++ EF+ +M  K
Sbjct:   81 DSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 149

[Close]

BLAST of CN192111 vs. ExPASy Swiss-Prot
Match: CALM_HORVU (Calmodulin OS=Hordeum vulgare GN=CAM PE=2 SV=2)

HSP 1 Score: 271.166 bits (692), Expect = 1.180e-72
Identity = 134/135 (99.26%), Postives = 135/135 (100.00%), Query Frame = 3

Query:    6 TDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYE 410
            TDDQI+EFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYE
Sbjct:    6 TDDQIAEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYE 140

HSP 2 Score: 66.6254 bits (161), Expect = 4.413e-11
Identity = 32/69 (46.38%), Postives = 45/69 (65.22%), Query Frame = 3

Query:   12 DQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARK 218
            D   E KEAF +FDKD +G I+  EL  VM +LG+  T+ E+ +MI E D DG+G I++ EF+ +M  K
Sbjct:   81 DSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 149

[Close]

BLAST of CN192111 vs. ExPASy Swiss-Prot
Match: CALM_CAPAN (Calmodulin OS=Capsicum annuum GN=CCM1 PE=2 SV=3)

HSP 1 Score: 271.166 bits (692), Expect = 1.180e-72
Identity = 134/135 (99.26%), Postives = 135/135 (100.00%), Query Frame = 3

Query:    6 TDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYE 410
            TDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINY+
Sbjct:    6 TDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYD 140

HSP 2 Score: 66.6254 bits (161), Expect = 4.413e-11
Identity = 32/69 (46.38%), Postives = 45/69 (65.22%), Query Frame = 3

Query:   12 DQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARK 218
            D   E KEAF +FDKD +G I+  EL  VM +LG+  T+ E+ +MI E D DG+G I++ EF+ +M  K
Sbjct:   81 DSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYDEFVKVMMAK 149

[Close]

BLAST of CN192111 vs. ExPASy Swiss-Prot
Match: CALM2_SOYBN (Calmodulin-2 OS=Glycine max GN=CAM-2 PE=1 SV=2)

HSP 1 Score: 271.166 bits (692), Expect = 1.180e-72
Identity = 134/135 (99.26%), Postives = 135/135 (100.00%), Query Frame = 3

Query:    6 TDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYE 410
            TDDQI+EFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYE
Sbjct:    6 TDDQIAEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYE 140

HSP 2 Score: 66.6254 bits (161), Expect = 4.413e-11
Identity = 32/69 (46.38%), Postives = 45/69 (65.22%), Query Frame = 3

Query:   12 DQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARK 218
            D   E KEAF +FDKD +G I+  EL  VM +LG+  T+ E+ +MI E D DG+G I++ EF+ +M  K
Sbjct:   81 DSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 149

The following BLAST results are available for this feature:

BLAST of CN192111 vs. ExPASy Swiss-Prot

BLAST of CN192111 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 472


Match Name	E-value	Identity	Description
CALM_LILLO	5.296e-73	100.00	Calmodulin OS=Lilium longiflorum PE=2 SV=2	[more]
CALM_EUPCH	5.296e-73	100.00	Calmodulin OS=Euphorbia characias PE=2 SV=4	[more]
CALM_BRYDI	5.296e-73	100.00	Calmodulin OS=Bryonia dioica PE=2 SV=2	[more]
CALM7_ARATH	5.296e-73	100.00	Calmodulin-7 OS=Arabidopsis thaliana GN=CAM7 PE=1 ...	[more]
CALM3_PETHY	5.296e-73	100.00	Calmodulin-related protein OS=Petunia hybrida GN=C...	[more]
CALM1_PETHY	5.296e-73	100.00	Calmodulin-1 OS=Petunia hybrida GN=CAM81 PE=2 SV=2	[more]
CALM1_DAUCA	5.296e-73	100.00	Calmodulin-1/11/16 OS=Daucus carota GN=CAM-1 PE=2 ...	[more]
CALM_HORVU	1.180e-72	99.26	Calmodulin OS=Hordeum vulgare GN=CAM PE=2 SV=2	[more]
CALM_CAPAN	1.180e-72	99.26	Calmodulin OS=Capsicum annuum GN=CCM1 PE=2 SV=3	[more]
CALM2_SOYBN	1.180e-72	99.26	Calmodulin-2 OS=Glycine max GN=CAM-2 PE=1 SV=2	[more]

Pages

Properties


Property Name	Value
Genbank description	UCRCS06_0006F18_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0006F18, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CN192111 ID=CN192111; Name=CN192111; organism=Citrus sinensis; type=EST; length=410bp
GAGGCACGGACGATCAGATCTCTGAGTTCAAAGAGGCCTTCAGCTTGTTT
GACAAGGATGGCGACGGTTGCATTACCACCAAGGAGCTTGGCACTGTTAT
GAGGTCACTGGGTCAGAACCCCACTGAGGCTGAGCTCCAGGACATGATCA
ATGAAGTGGATGCTGATGGTAATGGAACTATTGATTTTCCTGAATTCCTA
AACCTCATGGCCAGGAAGATGAAGGATACCGACTCTGAGGAGGAGCTGAA
AGAGGCCTTCCGGGTTTTCGACAAGGATCAGAATGGTTTCATCTCAGCTG
CTGAGCTGCGCCATGTGATGACAAACCTAGGAGAGAAACTTACTGATGAA
GAAGTTGATGAGATGATAAGGGAAGCTGATGTTGATGGTGATGGCCAGAT
AAATTATGAG