CN192087

Overview
NameCN192087
Unique NameCN192087
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length351
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10575 contig Csv1_Contig10575:15..366. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN192087 vs. ExPASy Swiss-Prot
Match: PPDE2_HUMAN (PPPDE peptidase domain-containing protein 2 OS=Homo sapiens GN=PPPDE2 PE=1 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.607e-11
Identity = 30/52 (57.69%), Postives = 39/52 (75.00%), Query Frame = 2 
Query:  194 HKVSLHVYDLSQGLARQLSMSFLGKAIEGIWHTGIVVYGNEYYFGGGIQHDC 349
            + V L+VYDLS+GLAR+LS   LGK +EGIWHT IVV+ +E++FG G    C
Sbjct:    7 YPVKLYVYDLSKGLARRLSPIMLGKQLEGIWHTSIVVHKDEFFFGSGGISSC 58
[Close]
BLAST of CN192087 vs. ExPASy Swiss-Prot
Match: PPDE2_XENLA (PPPDE peptidase domain-containing protein 2 OS=Xenopus laevis GN=pppde2 PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.935e-11
Identity = 28/51 (54.90%), Postives = 39/51 (76.47%), Query Frame = 2 
Query:  176 DMAEESHKVSLHVYDLSQGLARQLSMSFLGKAIEGIWHTGIVVYGNEYYFG 328
            + AE  H V L+VYD+S+GLAR+LS   LGK +EGIWHT I+V+  E+++G
Sbjct:    2 ETAEGPHLVRLYVYDMSRGLARRLSPVMLGKQLEGIWHTSIIVFDEEFFYG 52
The following BLAST results are available for this feature:
BLAST of CN192087 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
PPDE2_HUMAN7.607e-1157.69PPPDE peptidase domain-containing protein 2 OS=Hom... [more]
PPDE2_XENLA9.935e-1154.90PPPDE peptidase domain-containing protein 2 OS=Xen... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0006F06_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0006F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN192087 ID=CN192087; Name=CN192087; organism=Citrus sinensis; type=EST; length=351bp
GAGGCTCTCTTCCCTAAATTGACTGAGAAAAGAAAAAAAAAAAAGGAAAA
ATACAACTCTTCTTCGTCTTCTTCTCAGGTTTCATTGTGATTTGGAAGGG
CATCTTGCTGGGTTTCATTGGAAATTTTACAGTGCTTAGTATTTCACGGT
GCAAAACTTTTCGTATTAGACTGCAGATATGGCTGAGGAGAGTCACAAGG
TTTCCTTGCATGTTTATGATCTAAGCCAAGGACTAGCCCGACAACTTTCT
ATGTCATTCCTGGGGAAGGCTATTGAGGGAATATGGCACACAGGAATTGT
GGTCTATGGTAATGAATATTATTTTGGGGGTGGTATACAACATGATTGTG
T
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