CN192066

Overview
NameCN192066
Unique NameCN192066
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length693
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN192066 vs. ExPASy Swiss-Prot
Match: YJX4_SCHPO (CRAL-TRIO domain-containing protein C23B6.04c OS=Schizosaccharomyces pombe GN=SPCC23B6.04c PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.220e-15
Identity = 46/135 (34.07%), Postives = 73/135 (54.07%), Query Frame = -2
Query:  285 QMRHLVYLIENAILNLPEGQEQMAWLIDFTGWSLSTSVPIRSARETINILQNHYPERLAIAFLYNPPRIFEAFWKVVKYFLDAKTFQKVKFVYPKNKDSVEVMSSYFDEENLPTEFGGKATLHYDHEEFSKLMIQ 689
            Q+RHLV+ +E AI  +P G E +A LI+F   S  ++  +   +E +NILQ HY ERL  A + N P     F+K++  F+D  T +K+KF  P        +  Y  ++ L + FGG     Y HE++   +++
Sbjct:  713 QIRHLVFSLECAIDLMPPGVETLALLINFKSSSNRSNPSVGQGKEVLNILQTHYCERLGRALVINIPWAVWGFFKLISPFIDPITREKLKFNEP--------LDRYVPKDQLDSNFGGSLHFEYHHEKYWPQLVE 839          
BLAST of CN192066 vs. ExPASy Swiss-Prot
Match: PDR16_YEAST (Phosphatidylinositol transfer protein PDR16 OS=Saccharomyces cerevisiae GN=PDR16 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.950e-13
Identity = 46/142 (32.39%), Postives = 73/142 (51.41%), Query Frame = -2
Query:  285 QMRHLVYLIENAILNLPEGQEQMAWLIDFTGWSLSTSVPIRS-------ARETINILQNHYPERLAIAFLYNPPRIFEAFWKVVKYFLDAKTFQKVKFVYPKNKDSVEVMSSYFDEENLPTEFGGKATLHYDHEEFSKLMIQ 689
            Q++HLV+++E  I  +P GQ+ +A LIDF  +     VP  S        +E ++ILQ HYPERL  A L N P +   F K++  F+D  T +K+ F  P  K        Y  +  L + +GG     Y+H+ +   +++
Sbjct:  173 QVQHLVFMLERVIDFMPAGQDSLALLIDFKDYPDVPKVPGNSKIPPIGVGKEVLHILQTHYPERLGKALLTNIPWLAWTFLKLIHPFIDPLTREKLVFDEPFVK--------YVPKNELDSLYGGDLKFKYNHDVYWPALVE 306          
BLAST of CN192066 vs. ExPASy Swiss-Prot
Match: RSC5_DICDI (Random slug protein 5 OS=Dictyostelium discoideum GN=rsc5 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.960e-12
Identity = 39/136 (28.68%), Postives = 72/136 (52.94%), Query Frame = -2
Query:  297 QMRHLVYLIENAILNL--PEGQEQMAWLIDFTGWSLSTSVPIRSARETINILQNHYPERLAIAFLYNPPRIFEAFWKVVKYFLDAKTFQKVKFVYPKNKDSVEVMS---SYFDEENLPTEFGGKATLHYDHEEFSK 689
            + ++LVY +E     +  P+G EQ  +++D+  +  S ++ +++  E ++ L +H PER+  +   +PP +F   WK++  FL+  T  KV+F+  K  D     +    Y D ENL    GG    +Y+ +E+ K
Sbjct:  154 KFKNLVYWLEQGFSRMDEPKGIEQFCFIVDYKDFG-SGNMDMKTNLEAMHFLLDHCPERMGQSLFLDPPALFWFAWKIISPFLNEVTLSKVRFINSKKVDGKRTFAELLEYVDIENLEQNLGGNLDYNYNIDEYLK 288          
BLAST of CN192066 vs. ExPASy Swiss-Prot
Match: PDR17_YEAST (Phosphatidylinositol transfer protein PDR17 OS=Saccharomyces cerevisiae GN=PDR17 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.828e-11
Identity = 44/140 (31.43%), Postives = 67/140 (47.86%), Query Frame = -2
Query:  285 QMRHLVYLIENAILNLPEGQEQMAWLIDFTGWS-----LSTSVPIRSARETINILQNHYPERLAIAFLYNPPRIFEAFWKVVKYFLDAKTFQKVKFVYPKNKDSVEVMSSYFDEENLPTEFGGKATLHYDHEEFSKLMIQ 689
            Q++ LVY++E A    P+G E++  L+DF  +         + PI  AR  +N++Q+HYPERLA   L N P    AF K++  FLD  T  K  F  P          ++ +   L   + G     Y HE +   M++
Sbjct:  177 QVQELVYMMETATTVAPQGVEKITVLVDFKSYKEPGIITDKAPPISIARMCLNVMQDHYPERLAKCVLINIPWFAWAFLKMMYPFLDPATKAKAIFDEP--------FENHIEPSQLDALYNGLLDFKYKHEVYWPDMVK 308          
The following BLAST results are available for this feature:
BLAST of CN192066 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
YJX4_SCHPO4.220e-1534.07CRAL-TRIO domain-containing protein C23B6.04c OS=S... [more]
PDR16_YEAST3.950e-1332.39Phosphatidylinositol transfer protein PDR16 OS=Sac... [more]
RSC5_DICDI1.960e-1228.68Random slug protein 5 OS=Dictyostelium discoideum ... [more]
PDR17_YEAST4.828e-1131.43Phosphatidylinositol transfer protein PDR17 OS=Sac... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0006E18_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0006E18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN192066 ID=CN192066; Name=CN192066; organism=Citrus sinensis; type=EST; length=693bp
GAGGTGCATGTTTTATTCTACTAATTTCATGTCCGAGTTATGAGCGCCAA
TGGAAGAAATACAACATTTTCCTTCGCGCAGTAACTATAGCCCATCGGGA
GCATCCCAAGATGATAAATTGATAATGTTGCTAAAATTTTGATTTATGTC
CCTATCATTTATTACAATGATACCAGAGCAGCTCAACTGGCTGGCTCTGG
AGCCACTTCAGCTCCAGAATGCCCATTACCAACGCGTTGGAGTTTGTCAT
CAAATCCCCACAATGTTGCTGATTTTGAATCATCTTGAATCATTAATTTG
GAAAACTCTTCATGGTCATAATGCAATGTGGCCTTTCCTCCAAACTCAGT
CGGAAGATTTTCCTCATCAAAATATGAACTCATGACTTCCACGCTGTCTT
TATTCTTTGGATATACAAATTTCACCTTTTGGAATGTTTTGGCATCCAAG
AAATACTTGACAACCTTCCAAAATGCTTCAAAAATCCGTGGGGGATTGTA
GAGAAATGCTATGGCCAGCCTTTCAGGGTAGTGATTTTGTAATATATTGA
TAGTTTCTCGAGCAGACCTGATAGGGACGCTGGTGCTCAATGACCACCCA
GTGAAGTCTATTAACCATGCCATTTGTTCCTGACCCTCTGGAAGGTTTAG
GATAGCATTCTCTATGAGATAGACTAGGTGTCTCATCTGATTG
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