CN192056

Overview
NameCN192056
Unique NameCN192056
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length693
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2877 contig Csv1_Contig2877:1..696. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN192056 vs. ExPASy Swiss-Prot
Match: UCP3_HUMAN (Mitochondrial uncoupling protein 3 OS=Homo sapiens GN=UCP3 PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 9.683e-28
Identity = 69/150 (46.00%), Postives = 95/150 (63.33%), Query Frame = 2
Query:  236 EICTIPLDTAKVRLQLQKKAVAGDGVALPKYKGMLGTVATIAREEGMVSLWKGIVPGLHRQCLFGGLRIGLYEPVKTLYVGKDFVGDVPLSKKILAGLTTGALGIMIANPTDLVKVRLQAEGKLPPG-VPRRYSGALNAYFTL*NRKDLR 682
            ++ T PLDTAKVRLQ+Q +  A     L +Y+G+LGT+ T+ R EG  S + G+V GL RQ  F  +RIGLY+ VK +Y  K    +  L+ +ILAG TTGA+ +  A PTD+VKVR QA   L P    R+YSG ++AY T+   + +R
Sbjct:   28 DLVTFPLDTAKVRLQIQGENQAVQTARLVQYRGVLGTILTMVRTEGPCSPYNGLVAGLQRQMSFASIRIGLYDSVKQVYTPKG-ADNSSLTTRILAGCTTGAMAVTCAQPTDVVKVRFQASIHLGPSRSDRKYSGTMDAYRTIAREEGVR 176          
BLAST of CN192056 vs. ExPASy Swiss-Prot
Match: UCP3_RAT (Mitochondrial uncoupling protein 3 OS=Rattus norvegicus GN=Ucp3 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.157e-27
Identity = 68/149 (45.64%), Postives = 94/149 (63.09%), Query Frame = 2
Query:  236 EICTIPLDTAKVRLQLQKKAVAGDGVALPKYKGMLGTVATIAREEGMVSLWKGIVPGLHRQCLFGGLRIGLYEPVKTLYVGKDFVGDVPLSKKILAGLTTGALGIMIANPTDLVKVRLQAEGKLPPGVPRRYSGALNAYFTL*NRKDLR 682
            ++ T PLDTAKVRLQ+Q +     GV   +Y+G+LGT+ T+ R EG  S + G+V GLHRQ  F  +RIGLY+ VK  Y  K       ++ +ILAG TTGA+ +  A PTD+VKVR QA  +L  G  R+Y G ++AY T+   + +R
Sbjct:   28 DLLTFPLDTAKVRLQIQGE---NPGVQSVQYRGVLGTILTMVRTEGPRSPYSGLVAGLHRQMSFASIRIGLYDSVKQFYTPKG-TDHSSVAIRILAGCTTGAMAVTCAQPTDVVKVRFQAMIRLGTGGERKYRGTMDAYRTIAREEGVR 172          
BLAST of CN192056 vs. ExPASy Swiss-Prot
Match: UCP3_CANFA (Mitochondrial uncoupling protein 3 OS=Canis familiaris GN=UCP3 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.817e-27
Identity = 67/149 (44.97%), Postives = 92/149 (61.74%), Query Frame = 2
Query:  236 EICTIPLDTAKVRLQLQKKAVAGDGVALPKYKGMLGTVATIAREEGMVSLWKGIVPGLHRQCLFGGLRIGLYEPVKTLYVGKDFVGDVPLSKKILAGLTTGALGIMIANPTDLVKVRLQAEGKLPPGVPRRYSGALNAYFTL*NRKDLR 682
            ++ T PLDTAKVRLQ+Q +  A       +Y+G+LGT+ T+ R EG  S + G+V GL RQ  F  +RIGLY+ VK  Y  K       ++ +ILAG TTGA+ +  A PTD+VKVR QA   L  G  R+YSG ++AY T+   + +R
Sbjct:   28 DLLTFPLDTAKVRLQIQGENQATQAARRIQYRGVLGTILTMVRTEGPRSPYNGLVAGLQRQMSFASIRIGLYDSVKQFYTPKG-SDHSSITTRILAGCTTGAMAVSCAQPTDVVKVRFQASIHLGAGSNRKYSGTMDAYRTIAREEGVR 175          
BLAST of CN192056 vs. ExPASy Swiss-Prot
Match: UCP3_MOUSE (Mitochondrial uncoupling protein 3 OS=Mus musculus GN=Ucp3 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.276e-27
Identity = 67/149 (44.97%), Postives = 93/149 (62.42%), Query Frame = 2
Query:  236 EICTIPLDTAKVRLQLQKKAVAGDGVALPKYKGMLGTVATIAREEGMVSLWKGIVPGLHRQCLFGGLRIGLYEPVKTLYVGKDFVGDVPLSKKILAGLTTGALGIMIANPTDLVKVRLQAEGKLPPGVPRRYSGALNAYFTL*NRKDLR 682
            ++ T PLDTAKVRLQ+Q +      V   +Y+G+LGT+ T+ R EG  S + G+V GLHRQ  F  +RIGLY+ VK  Y  K       ++ +ILAG TTGA+ +  A PTD+VKVR QA  +L  G  R+Y G ++AY T+   + +R
Sbjct:   28 DLLTFPLDTAKVRLQIQGENPGAQSV---QYRGVLGTILTMVRTEGPRSPYSGLVAGLHRQMSFASIRIGLYDSVKQFYTPKG-ADHSSVAIRILAGCTTGAMAVTCAQPTDVVKVRFQAMIRLGTGGERKYRGTMDAYRTIAREEGVR 172          
BLAST of CN192056 vs. ExPASy Swiss-Prot
Match: UCP2_CYPCA (Mitochondrial uncoupling protein 2 OS=Cyprinus carpio GN=ucp2 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 6.474e-27
Identity = 67/152 (44.08%), Postives = 94/152 (61.84%), Query Frame = 2
Query:  236 EICTIPLDTAKVRLQLQ--KKAVAGDGVALPKYKGMLGTVATIAREEGMVSLWKGIVPGLHRQCLFGGLRIGLYEPVKTLYV-GKDFVGDVPLSKKILAGLTTGALGIMIANPTDLVKVRLQAEGKLPPGVPRRYSGALNAYFTL*NRKDLR 682
            ++ T PLDTAKVRLQ+Q   K     G    KY+G+ GT++T+ R EG  SL+ G+V GL RQ  F  +RIGLY+ VK  Y  G + VG   +  +++AG TTGA+ + +A PTD+VKVR QA+     G  +RY G ++AY T+   +  R
Sbjct:   28 DLFTFPLDTAKVRLQIQGESKIPVNTGHGPVKYRGVFGTISTMVRVEGPRSLYSGLVAGLQRQMSFASVRIGLYDSVKQFYTKGSEHVG---IGSRLMAGCTTGAMAVALAQPTDVVKVRFQAQNS--AGANKRYHGTMDAYRTIAKEEGFR 174          

HSP 2 Score: 20.7866 bits (42), Expect = 6.474e-27
Identity = 7/11 (63.64%), Postives = 8/11 (72.73%), Query Frame = 1
Query:  658 IVKQEGFAALW 690
            I K+EGF  LW
Sbjct:  167 IAKEEGFRGLW 177          
BLAST of CN192056 vs. ExPASy Swiss-Prot
Match: UCP3_BOVIN (Mitochondrial uncoupling protein 3 OS=Bos taurus GN=UCP3 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.197e-27
Identity = 66/149 (44.30%), Postives = 91/149 (61.07%), Query Frame = 2
Query:  236 EICTIPLDTAKVRLQLQKKAVAGDGVALPKYKGMLGTVATIAREEGMVSLWKGIVPGLHRQCLFGGLRIGLYEPVKTLYVGKDFVGDVPLSKKILAGLTTGALGIMIANPTDLVKVRLQAEGKLPPGVPRRYSGALNAYFTL*NRKDLR 682
            ++ T PLDTAKVRLQ+Q +  A       +Y+G+LGT+ T+ R EG  SL+ G+V GL RQ  F  +RIGLY+ VK  Y  K       +  +ILAG TTGA+ +  A PTD+VK+R QA      G  R+YSG ++AY T+   + +R
Sbjct:   28 DLLTFPLDTAKVRLQIQGENQAALAARSAQYRGVLGTILTMVRTEGPRSLYSGLVAGLQRQMSFASIRIGLYDSVKQFYTPKG-SDHSSIITRILAGCTTGAMAVTCAQPTDVVKIRFQASMHTGLGGNRKYSGTMDAYRTIAREEGVR 175          
BLAST of CN192056 vs. ExPASy Swiss-Prot
Match: UCP1_OCHDA (Mitochondrial brown fat uncoupling protein 1 OS=Ochotona daurica GN=UCP1 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.197e-27
Identity = 65/139 (46.76%), Postives = 90/139 (64.75%), Query Frame = 2
Query:  236 EICTIPLDTAKVRLQLQKKAVAGDGVALPKYKGMLGTVATIAREEGMVSLWKGIVPGLHRQCLFGGLRIGLYEPVKTLYVGKDFVGDVPLSKKILAGLTTGALGIMIANPTDLVKVRLQAEGKLPPGVPRRYSGALNAY 652
            ++ T PLDTAKVRLQ+Q +     G+   +YKG+LGT+ T+A+ EG + L+ G+  GL RQ  F  LRIGLY+ V+  + G++      L  KI AGLTTG + + I  PT++VKVRLQA+  L  G+  RY+G  NAY
Sbjct:   28 DVITFPLDTAKVRLQIQGECQTTSGI---RYKGVLGTITTLAKTEGPLKLYSGLPAGLQRQISFASLRIGLYDTVQEFWGGEE--ATPSLRSKICAGLTTGGVAVFIGQPTEVVKVRLQAQSHL-HGLKPRYTGTYNAY 160          
BLAST of CN192056 vs. ExPASy Swiss-Prot
Match: UCP2_PIG (Mitochondrial uncoupling protein 2 OS=Sus scrofa GN=UCP2 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.398e-26
Identity = 68/151 (45.03%), Postives = 95/151 (62.91%), Query Frame = 2
Query:  236 EICTIPLDTAKVRLQLQ-KKAVAGDGVALPKYKGMLGTVATIAREEGMVSLWKGIVPGLHRQCLFGGLRIGLYEPVKTLYV-GKDFVGDVPLSKKILAGLTTGALGIMIANPTDLVKVRLQAEGKLPPGVPRRYSGALNAYFTL*NRKDLR 682
            ++ T PLDTAKVRLQ+Q ++       A  +Y+G+LGT+ T+ R EG  SL+ G+V GL RQ  F  +RIGLY+ VK  Y  G +  G   +  ++LAG TTGAL + +A PTD+VKVR QA+ +   G  RRY   ++AY T+   + LR
Sbjct:   28 DLITFPLDTAKVRLQIQGERRGPVQAAASAQYRGVLGTILTMVRNEGPRSLYNGLVAGLQRQMSFASVRIGLYDSVKHFYTKGSEHAG---IGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGG--RRYRSTVDAYKTIAREEGLR 173          
BLAST of CN192056 vs. ExPASy Swiss-Prot
Match: UCP2_DANRE (Mitochondrial uncoupling protein 2 OS=Danio rerio GN=ucp2 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.859e-26
Identity = 66/152 (43.42%), Postives = 94/152 (61.84%), Query Frame = 2
Query:  236 EICTIPLDTAKVRLQLQ--KKAVAGDGVALPKYKGMLGTVATIAREEGMVSLWKGIVPGLHRQCLFGGLRIGLYEPVKTLYV-GKDFVGDVPLSKKILAGLTTGALGIMIANPTDLVKVRLQAEGKLPPGVPRRYSGALNAYFTL*NRKDLR 682
            ++ T PLDTAKVRLQ+Q   KA    G    KY+G+ GT++T+ R EG  SL+ G+V GL RQ  F  +RIGLY+ VK  Y  G D  G   +  +++AG TTGA+ + +A PTD++KVR QA+  +  G  +RY   ++AY T+   +  R
Sbjct:   28 DLFTFPLDTAKVRLQIQGENKASTNMGRGPVKYRGVFGTISTMVRVEGPRSLYSGLVAGLQRQMSFASVRIGLYDSVKQFYTKGSDHAG---IGSRLMAGCTTGAMAVAVAQPTDVLKVRFQAQ--VSAGASKRYHSTMDAYRTIAKEEGFR 174          

HSP 2 Score: 20.7866 bits (42), Expect = 1.859e-26
Identity = 7/11 (63.64%), Postives = 8/11 (72.73%), Query Frame = 1
Query:  658 IVKQEGFAALW 690
            I K+EGF  LW
Sbjct:  167 IAKEEGFRGLW 177          
BLAST of CN192056 vs. ExPASy Swiss-Prot
Match: UCP3_PIG (Mitochondrial uncoupling protein 3 OS=Sus scrofa GN=UCP3 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.385e-26
Identity = 67/149 (44.97%), Postives = 92/149 (61.74%), Query Frame = 2
Query:  236 EICTIPLDTAKVRLQLQKKAVAGDGVALPKYKGMLGTVATIAREEGMVSLWKGIVPGLHRQCLFGGLRIGLYEPVKTLYVGKDFVGDVPLSKKILAGLTTGALGIMIANPTDLVKVRLQAEGKLPPGVPRRYSGALNAYFTL*NRKDLR 682
            ++ T PLDTAKVRLQ+Q +  A       +Y+G+LGT+ T+ R EG  S + G+V GL RQ  F  +RIGLY+ VK LY  K       ++ +ILAG TTGA+ +  A PTD+VKVR QA     P   R+YSG ++AY T+   + +R
Sbjct:   28 DLLTFPLDTAKVRLQIQGENQAARSA---QYRGVLGTILTMVRNEGPRSPYNGLVAGLQRQMSFASIRIGLYDSVKQLYTPKG-SDHSSITTRILAGCTTGAMAVTCAQPTDVVKVRFQASIHAGPRSNRKYSGTMDAYRTIAREEGVR 172          
The following BLAST results are available for this feature:
BLAST of CN192056 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
UCP3_HUMAN9.683e-2846.00Mitochondrial uncoupling protein 3 OS=Homo sapiens... [more]
UCP3_RAT2.157e-2745.64Mitochondrial uncoupling protein 3 OS=Rattus norve... [more]
UCP3_CANFA2.817e-2744.97Mitochondrial uncoupling protein 3 OS=Canis famili... [more]
UCP3_MOUSE6.276e-2744.97Mitochondrial uncoupling protein 3 OS=Mus musculus... [more]
UCP2_CYPCA6.474e-2744.08Mitochondrial uncoupling protein 2 OS=Cyprinus car... [more]
UCP3_BOVIN8.197e-2744.30Mitochondrial uncoupling protein 3 OS=Bos taurus G... [more]
UCP1_OCHDA8.197e-2746.76Mitochondrial brown fat uncoupling protein 1 OS=Oc... [more]
UCP2_PIG1.398e-2645.03Mitochondrial uncoupling protein 2 OS=Sus scrofa G... [more]
UCP2_DANRE1.859e-2643.42Mitochondrial uncoupling protein 2 OS=Danio rerio ... [more]
UCP3_PIG2.385e-2644.97Mitochondrial uncoupling protein 3 OS=Sus scrofa G... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS06_0006E12_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0006E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN192056 ID=CN192056; Name=CN192056; organism=Citrus sinensis; type=EST; length=693bp
GAGGGGAGATTCTCGTACCCAAACACAAAACGAGTCATATTATTTAATTT
GCCTTAACCCATTTCTTTTGTCTTTACAAATTTGTTTGTCTTAAAAATCT
CAGCTTTCCTCTTTGTTTCGCTATAAAGATTACCCTCGTTTCTTTGCCAT
AAACATGGTGGCCGATTCCAAGGCTAAATCTGACATCTCTTTCGCCGGAA
CCTTCGCCAGTAGCGCTTTTGCCGCTTGCTTTGCCGAGATTTGTACTATT
CCTTTGGACACTGCTAAAGTTAGGCTTCAGCTGCAAAAGAAAGCTGTCGC
GGGGGATGGAGTGGCGTTGCCAAAGTACAAGGGTATGTTGGGTACAGTTG
CCACCATAGCTAGGGAAGAAGGTATGGTGTCTCTCTGGAAAGGCATTGTT
CCAGGATTACATCGTCAATGCTTATTTGGAGGGTTAAGGATTGGATTGTA
TGAGCCTGTGAAGACACTGTATGTGGGCAAGGACTTTGTTGGAGACGTTC
CTTTAAGCAAGAAAATACTTGCAGGACTTACAACTGGTGCTCTCGGGATC
ATGATCGCAAATCCAACTGATCTTGTGAAGGTCAGACTTCAAGCTGAAGG
AAAATTGCCTCCTGGTGTACCGAGGCGCTACAGTGGAGCGTTGAATGCTT
ATTTCACATTGTGAAACAGGAAGGATTTGCGGCTCTTTGGACT
back to top