CN192050

Overview
NameCN192050
Unique NameCN192050
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length633
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN192050_ssr14 microsatellite CN192050_ssr14:14..25. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig9478 contig Csv1_Contig9478:25..657. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN192050 vs. ExPASy Swiss-Prot
Match: M2OM_DICDI (Probable mitochondrial 2-oxoglutarate/malate carrier protein OS=Dictyostelium discoideum GN=ucpC PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.491e-13
Identity = 42/104 (40.38%), Postives = 59/104 (56.73%), Query Frame = 3
Query:  279 VKGFVEGGIASIVAGCSTHPLDLIKVRMQLQGENQVPSMRPALAFHANSSAVHVSAPPRLGPVGVGVRIIQQEGVSALFSGVSATVLRQTLYSTTRMGLYDVLK 590
            +K FV GG+A +++   THP+D +KVRMQLQGE                        P+ G + + V I Q EG   L+ G+SA++LRQ  Y+TTR GLYD++K
Sbjct:   25 LKQFVIGGLAGMLSSAFTHPIDSLKVRMQLQGEG-------------------TGVGPKRGALKMLVHINQTEGFFTLYKGLSASLLRQATYTTTRFGLYDLIK 109          
BLAST of CN192050 vs. ExPASy Swiss-Prot
Match: KMCP1_XENLA (Kidney mitochondrial carrier protein 1 OS=Xenopus laevis GN=slc25a30 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.182e-12
Identity = 42/117 (35.90%), Postives = 63/117 (53.85%), Query Frame = 3
Query:  282 KGFVEGGIASIVAGCSTHPLDLIKVRMQLQGENQVPSMRPALAFHANSSAVHVSAPPRLGPVGVGVRIIQQEGVSALFSGVSATVLRQTLYSTTRMGLYDVLKQKWTD-PETRNMPL 629
            K F+ GG+ASI A C T P+DL K R+Q+QG+      +  + +     A+              VRI ++EGV AL+SG++  +LRQ  Y T ++G Y  LK+ + D PE   + L
Sbjct:    7 KPFIYGGLASITAECGTFPIDLTKTRLQVQGQPNDAKYKE-IRYRGMMHAI--------------VRIWREEGVKALYSGIAPAMLRQASYGTIKIGTYQSLKRLFVDCPEDETLVL 108          
BLAST of CN192050 vs. ExPASy Swiss-Prot
Match: KMCP1_HUMAN (Kidney mitochondrial carrier protein 1 OS=Homo sapiens GN=SLC25A30 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.182e-12
Identity = 41/117 (35.04%), Postives = 64/117 (54.70%), Query Frame = 3
Query:  282 KGFVEGGIASIVAGCSTHPLDLIKVRMQLQGENQVPSMRPALAFHANSSAVHVSAPPRLGPVGVGVRIIQQEGVSALFSGVSATVLRQTLYSTTRMGLYDVLKQKWTD-PETRNMPL 629
            K FV GG+ASI A C T P+DL K R+Q+QG+      +  + +     A+              VRI ++EG+ AL+SG++  +LRQ  Y T ++G Y  LK+ + + PE   +P+
Sbjct:    7 KPFVYGGLASITAECGTFPIDLTKTRLQIQGQTNDAKFK-EIRYRGMLHAL--------------VRIGREEGLKALYSGIAPAMLRQASYGTIKIGTYQSLKRLFIERPEDETLPI 108          
BLAST of CN192050 vs. ExPASy Swiss-Prot
Match: KMCP1_XENTR (Kidney mitochondrial carrier protein 1 OS=Xenopus tropicalis GN=slc25a30 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.396e-11
Identity = 43/115 (37.39%), Postives = 62/115 (53.91%), Query Frame = 3
Query:  282 KGFVEGGIASIVAGCSTHPLDLIKVRMQLQGENQVPSMRPALAFHANSSAVHVSAPPRLGPVGVGVRIIQQEGVSALFSGVSATVLRQTLYSTTRMGLYDVLKQKWTD-PETRNM 623
            K F+ GG+ASI A C T P+DL K R+Q+QG+          A  A    +        G +   VRI ++EGV AL+SG++  +LRQ  Y T ++G Y  LK+ + D PE   +
Sbjct:    7 KPFIYGGLASITAECGTFPIDLTKTRLQVQGQ----------ANDAKYKEIRYR-----GMLHAIVRIWKEEGVKALYSGIAPAMLRQASYGTIKIGTYQSLKRLFVDCPEDETL 106          
BLAST of CN192050 vs. ExPASy Swiss-Prot
Match: KMCP1_MACFA (Kidney mitochondrial carrier protein 1 OS=Macaca fascicularis GN=SLC25A30 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.304e-11
Identity = 40/115 (34.78%), Postives = 63/115 (54.78%), Query Frame = 3
Query:  282 KGFVEGGIASIVAGCSTHPLDLIKVRMQLQGENQVPSMRPALAFHANSSAVHVSAPPRLGPVGVGVRIIQQEGVSALFSGVSATVLRQTLYSTTRMGLYDVLKQKWTD-PETRNM 623
            K FV GG+ASI A C T P+DL K R+Q+QG+      +  + +     A+              VRI ++EG+ AL+SG++  +LRQ+ Y T ++G Y  LK+ + + PE   +
Sbjct:    7 KPFVYGGLASITAECGTFPIDLTKTRLQIQGQTNDAKFK-EIRYRGMLHAL--------------VRIGREEGLKALYSGIAPAMLRQSSYGTIKIGTYQSLKRLFVERPEDETL 106          
BLAST of CN192050 vs. ExPASy Swiss-Prot
Match: KMCP1_MOUSE (Kidney mitochondrial carrier protein 1 OS=Mus musculus GN=Slc25a30 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.047e-11
Identity = 39/104 (37.50%), Postives = 57/104 (54.81%), Query Frame = 3
Query:  282 KGFVEGGIASIVAGCSTHPLDLIKVRMQLQGENQVPSMRPALAFHANSSAVHVSAPPRLGPVGVGVRIIQQEGVSALFSGVSATVLRQTLYSTTRMGLYDVLKQ 593
            K FV GG+ASI A C T P+DL K R+Q+QG+             AN   +        G +   +RI ++EG+ AL+SG++  +LRQ  Y T ++G Y  LK+
Sbjct:    7 KPFVYGGLASITAECGTFPIDLTKTRLQIQGQTN----------DANFREIRYR-----GMLHALMRIGREEGLKALYSGIAPAMLRQASYGTIKIGTYQSLKR 95          
The following BLAST results are available for this feature:
BLAST of CN192050 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
M2OM_DICDI1.491e-1340.38Probable mitochondrial 2-oxoglutarate/malate carri... [more]
KMCP1_XENLA8.182e-1235.90Kidney mitochondrial carrier protein 1 OS=Xenopus ... [more]
KMCP1_HUMAN8.182e-1235.04Kidney mitochondrial carrier protein 1 OS=Homo sap... [more]
KMCP1_XENTR1.396e-1137.39Kidney mitochondrial carrier protein 1 OS=Xenopus ... [more]
KMCP1_MACFA5.304e-1134.78Kidney mitochondrial carrier protein 1 OS=Macaca f... [more]
KMCP1_MOUSE9.047e-1137.50Kidney mitochondrial carrier protein 1 OS=Mus musc... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0006E08_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0006E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN192050 ID=CN192050; Name=CN192050; organism=Citrus sinensis; type=EST; length=633bp
GAGGAAAAGGCCCCTTCTTCTTCTTTCTTATTATCACATTGTACCCGGCG
TATGTCTCATAGACCCATCGTCCCTCATTCTTCCTCCATAGCTTTTGGCC
TTCATTCTCATCTCCTGGTCTCCAGTGAGATGAGCTCCAATTCCAACTGG
TAACAACAACGCAACTTACAATTTTCACTGACCCACAAATTAATTCGATC
TAAAATTCTTTTTCATTAAATTGATCATTTCTTCTTGATTCGTTTTCTGA
AAACAAAAAAAAAAGAGTTAAAATGGGTGTGAAAGGCTTTGTTGAAGGCG
GCATTGCTTCTATTGTTGCTGGATGTTCAACGCATCCCCTTGACCTAATC
AAGGTCCGCATGCAACTCCAGGGCGAAAACCAGGTTCCGTCTATGCGTCC
CGCTCTCGCTTTCCATGCCAACTCCTCCGCCGTCCACGTGTCTGCGCCAC
CCCGCCTGGGTCCCGTCGGCGTCGGCGTCCGTATTATTCAACAAGAAGGA
GTTTCGGCTCTCTTTTCCGGGGTCTCCGCAACGGTGCTCCGCCAGACCTT
GTACTCCACCACACGGATGGGTCTCTACGACGTTCTCAAGCAAAAGTGGA
CTGACCCGGAAACCCGGAACATGCCGCTCGTGC
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