CN192049

Overview
NameCN192049
Unique NameCN192049
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length571
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN192049 vs. ExPASy Swiss-Prot
Match: CYSK2_ORYSJ (Cysteine synthase OS=Oryza sativa subsp. japonica GN=RCS3 PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 5.287e-41
Identity = 78/121 (64.46%), Postives = 102/121 (84.30%), Query Frame = -1
Query:  209 PNVKIYGVEPAESNILNGGKPGPHLITGNGVGFKPDILDMDVMEKVLEVSSDDAVKMARELALKEGLMVGISSGANTVAALRLASMPENKGKLIVTVHASFGERYLSSALFQELRKEAENM 571
            P +KIYGVEP ES IL+GG+PGPH I G G GF P +LD++++++V++VSSD+A+ MA++LALKEGL+VGISSGA  VAA+R+A  PENKGKL+V V  SFGERYLSS LF+ +++EAENM
Sbjct:  201 PEIKIYGVEPTESAILSGGRPGPHKIQGIGAGFVPGVLDVNLLDEVVQVSSDEAISMAKQLALKEGLLVGISSGAAAVAAIRVAQRPENKGKLVVVVFPSFGERYLSSVLFESIKREAENM 321          
BLAST of CN192049 vs. ExPASy Swiss-Prot
Match: CYSK_MAIZE (Cysteine synthase OS=Zea mays PE=1 SV=2)

HSP 1 Score: 166.007 bits (419), Expect = 1.178e-40
Identity = 80/121 (66.12%), Postives = 98/121 (80.99%), Query Frame = -1
Query:  209 PNVKIYGVEPAESNILNGGKPGPHLITGNGVGFKPDILDMDVMEKVLEVSSDDAVKMARELALKEGLMVGISSGANTVAALRLASMPENKGKLIVTVHASFGERYLSSALFQELRKEAENM 571
            PNVK+YGVEP ES +LNGGKPGPH I G G GF P +LD+D++++ L+VSSD+A++ A+ LALKEGL+VGISSGA   AA+RLA  PEN GKL V V  SFGERYLSS LFQ ++KEAE+M
Sbjct:  201 PNVKLYGVEPVESAVLNGGKPGPHKIQGIGAGFIPGVLDVDLLDETLQVSSDEAIETAKALALKEGLLVGISSGAAAAAAVRLAKRPENAGKLFVVVFPSFGERYLSSVLFQSIKKEAESM 321          
BLAST of CN192049 vs. ExPASy Swiss-Prot
Match: CYSK1_ORYSJ (Cysteine synthase OS=Oryza sativa subsp. japonica GN=RCS1 PE=2 SV=2)

HSP 1 Score: 165.622 bits (418), Expect = 1.538e-40
Identity = 79/121 (65.29%), Postives = 99/121 (81.82%), Query Frame = -1
Query:  209 PNVKIYGVEPAESNILNGGKPGPHLITGNGVGFKPDILDMDVMEKVLEVSSDDAVKMARELALKEGLMVGISSGANTVAALRLASMPENKGKLIVTVHASFGERYLSSALFQELRKEAENM 571
            P++KIYGVEP ES +L+GGKPGPH I G G GF P +LD+D++ + ++VSSD+A++MA+ LALKEGL+VGISSGA   AA+RLA  PEN+GKL V V  SFGERYLSS LFQ ++KEAENM
Sbjct:  198 PDIKIYGVEPVESAVLSGGKPGPHKIQGIGAGFVPGVLDVDLINETVQVSSDEAIEMAKALALKEGLLVGISSGAAAAAAVRLAQRPENEGKLFVVVFPSFGERYLSSVLFQSIKKEAENM 318          
BLAST of CN192049 vs. ExPASy Swiss-Prot
Match: CYSK_WHEAT (Cysteine synthase OS=Triticum aestivum GN=CYS1 PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 7.635e-40
Identity = 76/121 (62.81%), Postives = 98/121 (80.99%), Query Frame = -1
Query:  209 PNVKIYGVEPAESNILNGGKPGPHLITGNGVGFKPDILDMDVMEKVLEVSSDDAVKMARELALKEGLMVGISSGANTVAALRLASMPENKGKLIVTVHASFGERYLSSALFQELRKEAENM 571
            PN+K+YGVEP ES ILNGGKPGPH I G G GF P +LD+D++++ ++VSSD++++MA+ LALKEGL+VGISSGA   AA+++A  PEN GKL V V  SFGERYLSS LF  ++KEAE+M
Sbjct:  202 PNIKLYGVEPTESAILNGGKPGPHKIQGIGAGFIPGVLDVDIIDETIQVSSDESIEMAKSLALKEGLLVGISSGAAAAAAIKVAQRPENAGKLFVVVFPSFGERYLSSVLFHSIKKEAESM 322          
BLAST of CN192049 vs. ExPASy Swiss-Prot
Match: CYSKP_SPIOL (Cysteine synthase, chloroplastic/chromoplastic OS=Spinacia oleracea GN=CYSK PE=1 SV=2)

HSP 1 Score: 162.925 bits (411), Expect = 9.971e-40
Identity = 78/123 (63.41%), Postives = 98/123 (79.67%), Query Frame = -1
Query:  203 PNVKIYGVEPAESNILNGGKPGPHLITGNGVGFKPDILDMDVMEKVLEVSSDDAVKMARELALKEGLMVGISSGANTVAALRLASMPENKGKLIVTVHASFGERYLSSALFQELRKEAENMQP 571
            P V++ G+EP ESNIL+GGKPGPH I G G GF P  LD+ VM++V+EVSS++AV+MA++LA+KEGL+VGISSGA   AA+R+   PEN GKLI  V  SFGERYLSS LFQ +R+E ENM+P
Sbjct:  260 PGVQVIGIEPTESNILSGGKPGPHKIQGLGAGFVPSNLDLGVMDEVIEVSSEEAVEMAKQLAMKEGLLVGISSGAAAAAAVRIGKRPENAGKLIAVVFPSFGERYLSSILFQSIREECENMKP 382          
BLAST of CN192049 vs. ExPASy Swiss-Prot
Match: CYSKP_SOLTU (Cysteine synthase, chloroplastic/chromoplastic OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 6.463e-39
Identity = 78/123 (63.41%), Postives = 97/123 (78.86%), Query Frame = -1
Query:  203 PNVKIYGVEPAESNILNGGKPGPHLITGNGVGFKPDILDMDVMEKVLEVSSDDAVKMARELALKEGLMVGISSGANTVAALRLASMPENKGKLIVTVHASFGERYLSSALFQELRKEAENMQP 571
            PN+KI GVEP ESN+L+GGKPGPH I G G GF P  LD DVM++V+E+SSD+AV+ AR LAL+EGL+VGISSGA  +AA+++   PEN GKLI  V  S+GERYLSS LFQ +R+E E M+P
Sbjct:  262 PNIKIIGVEPTESNVLSGGKPGPHKIQGIGAGFIPGNLDQDVMDEVIEISSDEAVETARTLALQEGLLVGISSGAAALAAIQVGKRPENAGKLIGVVFPSYGERYLSSILFQSIREECEKMKP 384          
BLAST of CN192049 vs. ExPASy Swiss-Prot
Match: CYSK1_BRAJU (Cysteine synthase OS=Brassica juncea PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.102e-38
Identity = 78/121 (64.46%), Postives = 97/121 (80.17%), Query Frame = -1
Query:  209 PNVKIYGVEPAESNILNGGKPGPHLITGNGVGFKPDILDMDVMEKVLEVSSDDAVKMARELALKEGLMVGISSGANTVAALRLASMPENKGKLIVTVHASFGERYLSSALFQELRKEAENM 571
            PNVK+YGVEP ES IL+GGKPGPH I G G GF P +L++D++++V++VSSD+++ MAR LALKEGL+VGISSGA   AA++LA  PEN GKL V V  SFGERYLS+ LF   RKEAE+M
Sbjct:  198 PNVKLYGVEPIESAILSGGKPGPHKIQGIGAGFIPSVLEVDLIDEVVQVSSDESIDMARLLALKEGLLVGISSGAAAAAAIKLAKRPENAGKLFVAVFPSFGERYLSTVLFDATRKEAESM 318          
BLAST of CN192049 vs. ExPASy Swiss-Prot
Match: CYSK_SOLTU (Cysteine synthase OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 2.456e-38
Identity = 75/121 (61.98%), Postives = 100/121 (82.64%), Query Frame = -1
Query:  209 PNVKIYGVEPAESNILNGGKPGPHLITGNGVGFKPDILDMDVMEKVLEVSSDDAVKMARELALKEGLMVGISSGANTVAALRLASMPENKGKLIVTVHASFGERYLSSALFQELRKEAENM 571
            PNVK+YGVEP ES IL+GGKPGPH I G G GF P +L++++++ V++VSS+++++MA+ LALKEGL+VGISSGA   AA+++A  PEN GKLIV +  SFGERYLSS LF+ +R+EAENM
Sbjct:  201 PNVKLYGVEPVESAILSGGKPGPHKIQGIGAGFIPGVLEVNLIDDVVQVSSEESIEMAKLLALKEGLLVGISSGAAAAAAIKVAKRPENAGKLIVVIFPSFGERYLSSVLFETVRREAENM 321          
BLAST of CN192049 vs. ExPASy Swiss-Prot
Match: CYSK_CITLA (Cysteine synthase OS=Citrullus lanatus PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 5.471e-38
Identity = 73/121 (60.33%), Postives = 99/121 (81.82%), Query Frame = -1
Query:  209 PNVKIYGVEPAESNILNGGKPGPHLITGNGVGFKPDILDMDVMEKVLEVSSDDAVKMARELALKEGLMVGISSGANTVAALRLASMPENKGKLIVTVHASFGERYLSSALFQELRKEAENM 571
            PN+K+YGVEP ES IL+GGKPGPH I G G GF P +LD++++++V++VSS+++++ A+ LALKEGL+VGISSGA   AA+R+A  PEN GKLIV V  SFGERYLS+ LF+ +++E ENM
Sbjct:  201 PNIKLYGVEPVESAILSGGKPGPHKIQGIGAGFIPGVLDVNLLDEVIQVSSEESIETAKLLALKEGLLVGISSGAAAAAAIRIAKRPENAGKLIVAVFPSFGERYLSTVLFESVKRETENM 321          
BLAST of CN192049 vs. ExPASy Swiss-Prot
Match: CYSK1_ARATH (Cysteine synthase OS=Arabidopsis thaliana GN=OASA1 PE=1 SV=2)

HSP 1 Score: 157.147 bits (396), Expect = 5.471e-38
Identity = 76/120 (63.33%), Postives = 96/120 (80.00%), Query Frame = -1
Query:  209 NVKIYGVEPAESNILNGGKPGPHLITGNGVGFKPDILDMDVMEKVLEVSSDDAVKMARELALKEGLMVGISSGANTVAALRLASMPENKGKLIVTVHASFGERYLSSALFQELRKEAENM 568
            NVK+YGVEP ES IL+GGKPGPH I G G GF P +L++D++++V++VSSD+++ MAR+LALKEGL+VGISSGA   AA++LA  PEN GKL V +  SFGERYLS+ LF   RKEAE M
Sbjct:  199 NVKLYGVEPVESAILSGGKPGPHKIQGIGAGFIPSVLNVDLIDEVVQVSSDESIDMARQLALKEGLLVGISSGAAAAAAIKLAQRPENAGKLFVAIFPSFGERYLSTVLFDATRKEAEAM 318          
The following BLAST results are available for this feature:
BLAST of CN192049 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
CYSK2_ORYSJ5.287e-4164.46Cysteine synthase OS=Oryza sativa subsp. japonica ... [more]
CYSK_MAIZE1.178e-4066.12Cysteine synthase OS=Zea mays PE=1 SV=2[more]
CYSK1_ORYSJ1.538e-4065.29Cysteine synthase OS=Oryza sativa subsp. japonica ... [more]
CYSK_WHEAT7.635e-4062.81Cysteine synthase OS=Triticum aestivum GN=CYS1 PE=... [more]
CYSKP_SPIOL9.971e-4063.41Cysteine synthase, chloroplastic/chromoplastic OS=... [more]
CYSKP_SOLTU6.463e-3963.41Cysteine synthase, chloroplastic/chromoplastic OS=... [more]
CYSK1_BRAJU1.102e-3864.46Cysteine synthase OS=Brassica juncea PE=2 SV=1[more]
CYSK_SOLTU2.456e-3861.98Cysteine synthase OS=Solanum tuberosum PE=2 SV=1[more]
CYSK_CITLA5.471e-3860.33Cysteine synthase OS=Citrullus lanatus PE=2 SV=1[more]
CYSK1_ARATH5.471e-3863.33Cysteine synthase OS=Arabidopsis thaliana GN=OASA1... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0006E06_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0006E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN192049 ID=CN192049; Name=CN192049; organism=Citrus sinensis; type=EST; length=571bp
TTTTTTTTTTTTTTTTTAACTGCAAAATATCATTTTCATTTTCATTTTTA
TTCTTAGAAAATACAAATTGAAACAATACCAAACGGGCCTAAACTATCTG
AAGGGATCAAATTTCATACAAATAGAGTTCAACAAGCAAATTTGATACAA
GTTCAGCTTTCTGATAAGCAAGCCCCATATACAAGCATTAGTCAACTGAA
ACTGGTTGCATGTTCTCAGCTTCTTTCCTGAGTTCTTGAAACAGAGCAGA
TGACAAGTATCGCTCCCCAAAGCTCGCATGAACAGTCACAATAAGTTTGC
CTTTGTTCTCTGGCATGCTAGCAAGTCTTAGGGCTGCCACTGTATTGGCA
CCAGATGATATTCCAACCATAAGCCCTTCCTTCAATGCCAGTTCCCTGGC
CATTTTTACTGCATCGTCACTACTAACCTCGAGAACCTTTTCCATCACAT
CCATGTCTAGTATATCTGGTTTGAATCCAACGCCATTGCCAGTAATGAGA
TGAGGACCTGGTTTGCCCCCATTCAATATATTACTTTCAGCTGGTTCCAC
TCCATAGATCTTAACATTAGG
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