CX301810

Overview
NameCX301810
Unique NameCX301810
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length697
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX301810 vs. ExPASy Swiss-Prot
Match: SYFB_HUMAN (Phenylalanyl-tRNA synthetase beta chain OS=Homo sapiens GN=FARSB PE=1 SV=2)

HSP 1 Score: 209.534 bits (532), Expect = 1.365e-53
Identity = 112/229 (48.91%), Postives = 152/229 (66.38%), Query Frame = 1
Query:   16 DIMEDVAIAYGYNNLEITPPKTLTYGGQQPLNMLSDLLRYELAFSGYTEVLSFALCSHKENFEYLQRPDNGS-AVVIANPKTTEFEVARTTLLVGLLKTLSCSKNLPLPIKVFEVSDVVLNKKDSEVGAINERRLAAIYTNVTSGFEHIHGLLDQIMLKLAV----DQNRYYLDSRGCTDPTFFPGMRANXXXXXXXXXXXXAFHPAVIQNFELNYPCSAVELNIEPFL 687
            DI+ED AIAYGYNN+++T PKT T   Q PLN L++LLR+++A +G+TE L+FALCS ++  + L    + + AV I+NPKT EF+VARTTLL GLLKT++ ++ +PLP+K+FE+SD+V+   +++VGA N R L A+Y N   GFE IHGLLD+IM  L V    D+  Y +  +    P FFPG  A               HP VI  FEL  PCS++E+NI PFL
Sbjct:  363 DIVEDAAIAYGYNNIQMTLPKTYTIANQFPLNKLTELLRHDMAAAGFTEALTFALCSQEDIADKLGVDISATKAVHISNPKTAEFQVARTTLLPGLLKTIAANRKMPLPLKLFEISDIVIKDSNTDVGAKNYRHLCAVYYNKNPGFEIIHGLLDRIMQLLDVPPGEDKGGYVI--KASEGPAFFPGRCAEIFARGQSVGKLGVLHPDVITKFELTMPCSSLEINIGPFL 589          
BLAST of CX301810 vs. ExPASy Swiss-Prot
Match: SYFB_MOUSE (Phenylalanyl-tRNA synthetase beta chain OS=Mus musculus GN=Farsb PE=2 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.509e-52
Identity = 112/228 (49.12%), Postives = 151/228 (66.23%), Query Frame = 1
Query:   16 DIMEDVAIAYGYNNLEITPPKTLTYGGQQPLNMLSDLLRYELAFSGYTEVLSFALCSHKENFEYLQRPDNGS-AVVIANPKTTEFEVARTTLLVGLLKTLSCSKNLPLPIKVFEVSDVVLNKKDSEVGAINERRLAAIYTNVTSGFEHIHGLLDQIMLKLAV---DQNRYYLDSRGCTDPTFFPGMRANXXXXXXXXXXXXAFHPAVIQNFELNYPCSAVELNIEPFL 687
            DI+ED AIAYGYNN+++T PKT T   Q PLN L++LLR ++A +G+TE L+FALCS ++  + L    + + AV I+NPKT EF+VARTTLL GLLKT++ ++ +PLP+K+FE+SDVV+     +VGA N R L A+Y + T GFE IHGLLD+IM  L V   +++  Y+  +      FFPG  A               HP VI  FEL  PCS++E+NIEPFL
Sbjct:  363 DIVEDAAIAYGYNNIQMTLPKTYTIANQFPLNKLTELLRLDMAAAGFTEALTFALCSQEDIADKLGLDISATKAVHISNPKTAEFQVARTTLLPGLLKTIAANRKMPLPLKLFEISDVVVKDSGKDVGAKNYRHLCAVYYSKTPGFEIIHGLLDRIMQLLDVPPGEESGGYM-IKASAGSAFFPGRCAEIFVGGQSIGKLGVLHPDVITKFELTMPCSSLEINIEPFL 589          
BLAST of CX301810 vs. ExPASy Swiss-Prot
Match: SYFB_PONAB (Phenylalanyl-tRNA synthetase beta chain OS=Pongo abelii GN=FARSB PE=2 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 1.971e-52
Identity = 110/229 (48.03%), Postives = 152/229 (66.38%), Query Frame = 1
Query:   16 DIMEDVAIAYGYNNLEITPPKTLTYGGQQPLNMLSDLLRYELAFSGYTEVLSFALCSHKENFEYLQRPDNGS-AVVIANPKTTEFEVARTTLLVGLLKTLSCSKNLPLPIKVFEVSDVVLNKKDSEVGAINERRLAAIYTNVTSGFEHIHGLLDQIMLKLAV----DQNRYYLDSRGCTDPTFFPGMRANXXXXXXXXXXXXAFHPAVIQNFELNYPCSAVELNIEPFL 687
            DI+ED AIAYGY+N+++T PKT T   Q PLN L++LLR+++A +G+TE L+FALCS ++  + L    + + AV I++PKT EF+VARTTLL GLLKT++ ++ +PLP+K+FE+SD+V+   +++VGA N R L A+Y N   GFE IHGLLD+IM  L V    D+  Y +  +    P FFPG  A               HP VI  FEL  PCS++E+NI PFL
Sbjct:  363 DIVEDAAIAYGYSNIQMTLPKTYTIANQFPLNKLTELLRHDMAAAGFTEALTFALCSQEDIADKLGVDISATKAVHISSPKTAEFQVARTTLLPGLLKTIAANRKMPLPLKLFEISDIVIKDSNTDVGAKNYRHLCAVYYNKNPGFEIIHGLLDRIMQLLDVLPGEDKGGYVI--KASEGPAFFPGRCAEIFARGQSVGKLGVLHPDVITKFELTMPCSSLEINIGPFL 589          
BLAST of CX301810 vs. ExPASy Swiss-Prot
Match: SYFB_DROME (Probable phenylalanyl-tRNA synthetase beta chain OS=Drosophila melanogaster GN=CG5706 PE=2 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 6.339e-51
Identity = 112/231 (48.48%), Postives = 147/231 (63.64%), Query Frame = 1
Query:   16 DIMEDVAIAYGYNNLEITPPKTLTYGGQQPLNMLSDLLRYELAFSGYTEVLSFALCSHKENFEYLQRP-DNGSAVVIANPKTTEFEVARTTLLVGLLKTLSCSKNLPLPIKVFEVSDVVLNKKDSEVGAINERRLAAIYTNVTSGFEHIHGLLDQIMLKLAV------DQNRYYLDSRGCTDPTFFPGMRANXXXXXXXXXXXXAFHPAVIQNFELNYPCSAVELNIEPFL 687
            DI EDVAIAYGYNN++ + P  +    Q PLN L++ LR ++A +G+TE L+F LCS  +    L +  D   AV I NPKT EF+V RTTLL GLLKTL  ++ +PLP+K+FE+SDVV+  + +EVGA NERR+ A+  N T+GFE +HGLLD++M  L+V          YYL  +   DP++FPG  AN              HP V+Q FEL  PCSAVE  IEPF+
Sbjct:  361 DIYEDVAIAYGYNNIKKSLPAFMQIAKQFPLNKLTEQLREQVAQAGFTEALTFTLCSRDDIGRKLNKNIDALPAVHIGNPKTLEFQVVRTTLLPGLLKTLVANRKMPLPLKLFEISDVVVADESTEVGARNERRVCAVNCNKTAGFEVVHGLLDRVMQLLSVPWKSASGTKGYYL--QATEDPSYFPGRCANVMYDGVVIGKIGVLHPTVLQAFELTTPCSAVEFTIEPFV 589          
BLAST of CX301810 vs. ExPASy Swiss-Prot
Match: SYFB_CAEEL (Phenylalanyl-tRNA synthetase beta chain OS=Caenorhabditis elegans GN=frs-2 PE=2 SV=2)

HSP 1 Score: 196.438 bits (498), Expect = 1.196e-49
Identity = 112/230 (48.70%), Postives = 150/230 (65.22%), Query Frame = 1
Query:   16 DIMEDVAIAYGYNNLEITPPKTLTYGGQQPLNMLSDLLRYELAFSGYTEVLSFALCSHKENFEYLQRPDNGS-AVVIANPKTTEFEVARTTLLVGLLKTLSCSKNLPLPIKVFEVSDVVLNKKDSEVGAINERRLAAIYTNVTSGFEHIHGLLDQIMLKLAVDQNR----YYLDSRGCTDPTFFPGMRAN-XXXXXXXXXXXXAFHPAVIQNFELNYPCSAVELNIEPFL 687
            DI EDV +A+GYNNL    P++ T     P+N L D LR E+A +G+TE L+FALCS  +    L++PD  S AV I NPKT EF+VART+LL GLLKTLS ++++PLP+K+FE+ DV++   +++VGA NERRLAA+Y N  +GFE I G LD+IM  L V+  R    YY+++    + T+FPG  A              A HP VI +F L  PC AVE+N+EPFL
Sbjct:  364 DIAEDVGVAFGYNNLITKLPESNTVAVAFPINKLCDNLRIEIAAAGWTEALNFALCSRDDISSKLRQPDALSHAVHIGNPKTLEFQVARTSLLPGLLKTLSSNRDMPLPLKLFELQDVIVKDSNTDVGARNERRLAAVYYNRAAGFEIIQGFLDRIMRMLNVNPARDGTGYYIEAD--ENSTYFPGRCAKIIGPKGVVLGHIGALHPEVITSFGLTLPCGAVEINVEPFL 591          
BLAST of CX301810 vs. ExPASy Swiss-Prot
Match: SYFB_ARATH (Probable phenylalanyl-tRNA synthetase beta chain OS=Arabidopsis thaliana GN=At1g72550 PE=2 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 8.568e-48
Identity = 103/237 (43.46%), Postives = 144/237 (60.76%), Query Frame = 1
Query:   16 DIMEDVAIAYGYNNLEITPPKTLTYGGQQPLNMLSDLLRYELAFSGYTEVLSFALCSHKENFEYLQRPDNGSAVVIANPKTTEFEVARTTLLVGLLKTLSCSKNLPLPIKVFEVSDVVLNKKDSEVGAINERRLAAIYTNVTSGFEHIHGLLDQIMLKLAV-------------DQNRYYLDSRGCTDPTFFPGMRANXXXXXXXXXXXXAFHPAVIQNFELNYPCSAVELNIEPFL 687
            D+MEDVAIAYG+NN+    P ++       LN L+DLLR E+A   YTEV+++ LCSHKENF  L R D  SAV++ NP++ +FE  R  L+ GLLKT+  +   P PIK+FE+SDVV+  +  +VGA N R LAA+Y   TSGFE IHGL+D+IM  +A+             +++ YY+  +   +P F PG +A+              HP V+ NF++  PCS +EL+IE  L
Sbjct:  367 DVMEDVAIAYGFNNIPTRKPASIK---PLTLNELTDLLRIEIAMCVYTEVVTWLLCSHKENFAMLNREDVNSAVIVGNPRSADFEAMRRALMPGLLKTVGHNNKYPKPIKIFEISDVVMLDESKDVGASNRRHLAALYCGATSGFELIHGLVDRIMEVMAIPFLTIHENNVPINEKDGYYV--KLSQEPEFLPGRQASIIVRGKHIGNFGIVHPEVLNNFDIPDPCSYLELDIEAIL 598          
BLAST of CX301810 vs. ExPASy Swiss-Prot
Match: SYFB_SCHPO (Phenylalanyl-tRNA synthetase beta chain OS=Schizosaccharomyces pombe GN=SPAC23A1.12c PE=2 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 2.333e-45
Identity = 102/236 (43.22%), Postives = 145/236 (61.44%), Query Frame = 1
Query:   16 DIMEDVAIAYGYNNLEIT-PPKTLTYGGQQPLNMLSDLLRYELAFSGYTEVLSFALCSHKENFEYLQRPDNGSAVVIANPKTTEFEVARTTLLVGLLKTLSCSKNLPLPIKVFEVSDVVLNKKDSEVGAINERRLAAIYTNVTSGFEHIHGLLDQIMLKLAV---------DQNRYYLDSRGCTDPTFFPG------MRANXXXXXXXXXXXXAFHPAVIQNFELNYPCSAVELNI 675
            DIMED+ IAYGY+NL+ T P  ++T+G    +N L+D++R E+A++G++EV+ F LCSH EN+ +L++ D+  AV +ANPKT EF+V R++LL G+LKT+  +KN  LPIK+FEVSDV       E    NER L AI+  + SGFE IHGLLD++ML L           D   Y++++    D TFFPG       R +              HP V++ FEL    SAVE+++
Sbjct:  352 DIMEDLGIAYGYDNLKHTYPAHSVTFGKPFEVNRLADIIRNEVAYAGWSEVMPFILCSHDENYAWLRKTDDSKAVQLANPKTLEFQVVRSSLLPGILKTVRENKNHALPIKIFEVSDVAFCDYSRERMTRNERHLCAIFAGLNSGFEQIHGLLDRVMLMLNTKRIMNPKDSDAVGYWIEAE--DDSTFFPGRCAAVYYRKDFGTAGIRVGVFGVLHPLVLEKFELTSAASAVEIDL 585          
BLAST of CX301810 vs. ExPASy Swiss-Prot
Match: SYFB_DICDI (Phenylalanyl-tRNA synthetase beta chain OS=Dictyostelium discoideum GN=pheSB PE=3 SV=2)

HSP 1 Score: 177.178 bits (448), Expect = 7.506e-44
Identity = 100/239 (41.84%), Postives = 142/239 (59.41%), Query Frame = 1
Query:   16 DIMEDVAIAYGYNNLEITPPKTLTYGGQQPLNMLSDLLRYELAFSGYTEVLSFALCSHKENFEYLQRPDNGSAVVIANPKTTEFEVARTTLLVGLLKTLSCSKNLPLPIKVFEVSDVVL------------NKKDSEVGAINERRLAAIYTNVTSGFEHIHGLLDQIMLKLAV--DQNR-----YYLDSRGCTDPTFFPGMRANXXXXXXXXXXXXAFHPAVIQNFELNYPCSAVELNI 675
            DIMEDVAI YGY+NL+   P   T G  QP+N LS+LL  E+A +G+TE+++F LC +++NF  L + D+GS+V I+N  + EF   RT L+  LLK++S +K  PLP+K+FE+SDV +            N  +S+VGA N+R L AIY N ++  E IHGLLD+IML L +  D  R     YYL+     D  F PG   N              HP V++N+  ++PC+ +EL +
Sbjct:  367 DIMEDVAIGYGYDNLKKEIPNCNTIGRVQPINKLSELLANEIALAGFTEIMTFVLCQNRDNFTALNKADDGSSVKISNAVSEEFTEVRTNLVSTLLKSVSANKAAPLPLKMFEISDVSIKGSLGNKDLSDPNSNNSDVGAYNKRMLGAIYCNQSAKIEVIHGLLDRIMLVLDIKLDATRSSNKGYYLEL--SNDKLFLPGTGINVIVNGKRVGHMGIVHPLVLKNYSCSFPCTILELEL 603          
BLAST of CX301810 vs. ExPASy Swiss-Prot
Match: SYFB_CANAL (Phenylalanyl-tRNA synthetase beta chain OS=Candida albicans GN=FRS1 PE=2 SV=3)

HSP 1 Score: 172.94 bits (437), Expect = 1.416e-42
Identity = 102/240 (42.50%), Postives = 139/240 (57.92%), Query Frame = 1
Query:   16 DIMEDVAIAYGYNNLEITPPKTLTY-GGQQPLNMLSDLLRYELAFSGYTEVLSFALCSHKENFEYLQRPDNGS-AVVIANPKTTEFEVARTTLLVGLLKTLSCSKNLPLPIKVFEVSDVVLNKKDSEVGAINERRLAAIYTNVTSGFEHIHGLLDQIMLKL--------AVDQNRYYLDSRGCTDPTFFPGMRANXXXXXXXXXXXXA------FHPAVIQNFELNYPCSAVELNIEPFL 687
            DIMEDVAI YGY+NL+ T P+  +      P+N ++D+LR   + +GY EV+   L SH ENF +L++ D+G+ AV + NPKT E++V RTTLL G+LKT+  ++   LPIKVFE  D+VL   + E GA N+R  AA+Y   TSGFE + GLL +IM  +        + DQ R Y       + TFFPG  A             A       HP V+ NF++ Y  S+VE+N E FL
Sbjct:  353 DIMEDVAIGYGYDNLKKTKPQAESLVAAPLPVNKVADILRLASSQAGYLEVMPLTLSSHDENFAWLKQKDDGTKAVKLENPKTIEYQVVRTTLLPGILKTVKENRKHSLPIKVFECGDIVLKNPELERGAFNQRNWAALYVGKTSGFEMVQGLLGKIMQTMRTPWLENPSKDQRRGYWIEEDKENTTFFPGRGAKIYFRNADNAEAKAIGSIGVLHPEVMNNFDIPYAASSVEINAEVFL 592          
BLAST of CX301810 vs. ExPASy Swiss-Prot
Match: SYFB_YEAST (Phenylalanyl-tRNA synthetase beta chain OS=Saccharomyces cerevisiae GN=FRS1 PE=1 SV=3)

HSP 1 Score: 153.295 bits (386), Expect = 1.161e-36
Identity = 99/246 (40.24%), Postives = 127/246 (51.63%), Query Frame = 1
Query:   16 DIMEDVAIAYGYNNLEITPPKTLTYGGQQ------PLNMLSDLLRYELAFSGYTEVLSFALCSHKENFEYLQRPDNGS-AVVIANPKTTEFEVARTTLLVGLLKTLSCSKNLPLPIKVFEVSDVVLNKKDSEVGAINERRLAAIYTNVTSGFEHIHGLLDQIMLKL---------AVDQNRYYLDSRGCTDPTFFPG------MRANXXXXXXXXXXXXAFHPAVIQNFELNYPCSAVELNIEPFL 687
            DIMED A+ YG+NNL    PK              P+N +SD+ R   + + + EVL   LCSH ENF++L++ DNG  AV +ANPKT E++V RTTLL G+LKT+  ++   LPIKVFE  DVV      E  A NER  AAIY    SGFE I GLL +IM            A    R Y      +  T+FPG       R+               HP V+ NF++ +  S VE+N E FL
Sbjct:  354 DIMEDAAVGYGFNNL----PKGEKLSNANFIAKPLPINKVSDIFRVASSQATWVEVLPLTLCSHDENFKFLRQSDNGDLAVKLANPKTLEYQVVRTTLLPGILKTVKENRKHSLPIKVFETGDVVFKDDKLERKAYNERHWAAIYVGKNSGFEIIQGLLGKIMQTFRTEWIADYGAAASGRGYWIEEDDSVKTYFPGRGAKVMFRSKEGAEPKQIGHLGVLHPEVMMNFDVPFAASFVEVNAEVFL 595          
The following BLAST results are available for this feature:
BLAST of CX301810 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
SYFB_HUMAN1.365e-5348.91Phenylalanyl-tRNA synthetase beta chain OS=Homo sa... [more]
SYFB_MOUSE1.509e-5249.12Phenylalanyl-tRNA synthetase beta chain OS=Mus mus... [more]
SYFB_PONAB1.971e-5248.03Phenylalanyl-tRNA synthetase beta chain OS=Pongo a... [more]
SYFB_DROME6.339e-5148.48Probable phenylalanyl-tRNA synthetase beta chain O... [more]
SYFB_CAEEL1.196e-4948.70Phenylalanyl-tRNA synthetase beta chain OS=Caenorh... [more]
SYFB_ARATH8.568e-4843.46Probable phenylalanyl-tRNA synthetase beta chain O... [more]
SYFB_SCHPO2.333e-4543.22Phenylalanyl-tRNA synthetase beta chain OS=Schizos... [more]
SYFB_DICDI7.506e-4441.84Phenylalanyl-tRNA synthetase beta chain OS=Dictyos... [more]
SYFB_CANAL1.416e-4242.50Phenylalanyl-tRNA synthetase beta chain OS=Candida... [more]
SYFB_YEAST1.161e-3640.24Phenylalanyl-tRNA synthetase beta chain OS=Sacchar... [more]

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Properties
Property NameValue
Genbank descriptionC08013H01SK PhyRootSw1 Citrus sinensis cDNA clone C08013H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX301810 ID=CX301810; Name=CX301810; organism=Citrus sinensis; type=EST; length=697bp
AATTCGGCTCGAGGTGATATCATGGAAGATGTGGCGATAGCATATGGATA
CAATAACCTTGAAATCACACCTCCTAAAACATTGACGTATGGTGGCCAAC
AACCGCTTAATATGTTGAGTGATTTATTACGATATGAATTAGCTTTCTCT
GGCTATACTGAAGTCTTGTCTTTTGCTTTGTGCTCACACAAGGAGAATTT
TGAATATTTACAACGACCCGATAATGGATCAGCAGTTGTGATTGCTAATC
CAAAAACCACTGAATTTGAAGTGGCAAGAACAACGTTGTTAGTGGGATTA
TTAAAAACATTGTCGTGTAGTAAGAACTTGCCATTGCCCATTAAAGTTTT
CGAGGTATCCGATGTGGTGTTAAATAAAAAAGATTCAGAAGTTGGTGCAA
TTAATGAACGTCGCCTCGCTGCTATCTACACTAATGTCACCTCCGGCTTT
GAGCACATTCACGGTCTTTTGGATCAAATTATGTTGAAATTAGCAGTGGA
TCAAAACAGATATTACTTGGATTCGCGTGGTTGCACTGACCCAACTTTCT
TCCCAGGAATGAGAGCGAATGTAATTGTCGACGAANAGGTAGTAGGAGTC
ATCGGAGCTTTTCACCCCGCTGTTATTCAAAATTTTGAGTTAAATTATCC
TTGTTCAGCAGTGGAATTGAACATCGAACCTTTTTTGTGAGGAAGTC
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