CN192013

Overview
NameCN192013
Unique NameCN192013
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length571
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5926 contig Csv1_Contig5926:326..896. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN192013 vs. ExPASy Swiss-Prot
Match: SYNC1_ARATH (Asparaginyl-tRNA synthetase, cytoplasmic 1 OS=Arabidopsis thaliana GN=SYNC1 PE=2 SV=1)

HSP 1 Score: 307.375 bits (786), Expect = 3.233e-83
Identity = 145/183 (79.23%), Postives = 159/183 (86.89%), Query Frame = 3
Query:    3 CAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMISF 551
            CAEAYVK+MC+WLL+ C+ DME MAKN+D  CI+RL++VASTPF RITYT           +GK F+N VEWGIDLASEHERYLTEV FQKP+IVYNYPKGIKAFYMRLNDD KTVAAMDVLVPKVGELIGGSQREERYDVIK RIE+MGLP+EPYEWYLDLRR+GTVKH GFGLGFERMI F
Sbjct:  368 CAEAYVKYMCNWLLEKCYADMELMAKNFDSGCIDRLKLVASTPFGRITYTKAIELLEEAVAKGKEFDNNVEWGIDLASEHERYLTEVLFQKPLIVYNYPKGIKAFYMRLNDDEKTVAAMDVLVPKVGELIGGSQREERYDVIKKRIEEMGLPIEPYEWYLDLRRYGTVKHCGFGLGFERMILF 550          
BLAST of CN192013 vs. ExPASy Swiss-Prot
Match: SYNC3_ARATH (Asparaginyl-tRNA synthetase, cytoplasmic 3 OS=Arabidopsis thaliana GN=SYNC3 PE=2 SV=1)

HSP 1 Score: 291.582 bits (745), Expect = 1.836e-78
Identity = 142/185 (76.76%), Postives = 154/185 (83.24%), Query Frame = 3
Query:    3 CAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKH-FENKVEWGIDLASEHERYLTEVKF-QKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMISF 551
            CAEAYVK+MC WL+D C DDME M KN D+ C  RL MVA   F+R+TYT           +GK  F+NKVEWGIDLASEHERYLTEV+F QKP+IVYNYPKGIKAFYMRLNDD KTVAAMDVLVPKVGELIGGSQREERYDVIK RIE+MGLP+EPYEWYLDLRR+GTVKH GFGLGFERMI F
Sbjct:  365 CAEAYVKYMCKWLMDKCGDDMELMDKNVDEGCTKRLNMVAKASFKRVTYTEAIERLEKAVAQGKVVFDNKVEWGIDLASEHERYLTEVEFDQKPIIVYNYPKGIKAFYMRLNDDEKTVAAMDVLVPKVGELIGGSQREERYDVIKQRIEEMGLPMEPYEWYLDLRRYGTVKHCGFGLGFERMIQF 549          
BLAST of CN192013 vs. ExPASy Swiss-Prot
Match: SYN_PARUW (Asparaginyl-tRNA synthetase OS=Protochlamydia amoebophila (strain UWE25) GN=asnS PE=3 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 1.848e-54
Identity = 104/183 (56.83%), Postives = 133/183 (72.68%), Query Frame = 3
Query:    3 CAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMISF 551
            CAE Y+K++  ++LD+C +DMEF  K+     I+RL  V +T FER +YT          K  K FE  V+WG+DL SEHER+L E  F KPVI+ +YPK IKAFYMR N+D KTVAAMDVLVPKVGE+IGGSQREER  V++S++++  LP E Y WYL+LR+FG+V HSGFG GFER++ F
Sbjct:  266 CAEDYLKYILKYVLDNCQEDMEFFNKHVATDLISRLEHVINTSFERASYTYAVRILE---KADKKFEYPVKWGLDLQSEHERFLAEEFFGKPVILTDYPKDIKAFYMRTNEDNKTVAAMDVLVPKVGEIIGGSQREERLSVLESKLKEFNLPAEEYWWYLELRKFGSVPHSGFGAGFERLVQF 445          
BLAST of CN192013 vs. ExPASy Swiss-Prot
Match: SYN_THEEB (Asparaginyl-tRNA synthetase OS=Thermosynechococcus elongatus (strain BP-1) GN=asnS PE=3 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 4.118e-54
Identity = 101/183 (55.19%), Postives = 131/183 (71.58%), Query Frame = 3
Query:    6 AEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMISFL 554
            AEA+++F+  ++LDHC +DM F  +  D S +     +A+ PF  ++Y+          K G+ FE  V WG+DL SEHERYL E   Q+PVIVY+YP  IKAFYMRLNDD KTVAAMD+L PK+GE+IGGSQREER+DV++ RI   GL   PY WYLDLRR+G+V H+GFGLGFER++ F+
Sbjct:  262 AEAFLQFVFRYVLDHCPEDMAFFQERIDHSVMATAEQMATQPFAHLSYSEAIQVLE---KSGRAFEFPVAWGLDLQSEHERYLAEEYCQRPVIVYDYPAAIKAFYMRLNDDGKTVAAMDILAPKIGEIIGGSQREERFDVLQERIVTQGLDPAPYWWYLDLRRYGSVPHAGFGLGFERLVQFM 441          
BLAST of CN192013 vs. ExPASy Swiss-Prot
Match: SYN_PORGI (Asparaginyl-tRNA synthetase OS=Porphyromonas gingivalis GN=asnS PE=3 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 4.118e-54
Identity = 97/183 (53.01%), Postives = 128/183 (69.95%), Query Frame = 3
Query:    6 AEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMISFL 554
            AE ++K+   W LD+C DD+ F+++++DK  I+RL+ V   PF R+ YT          K G  FE  + WG DLASEHERYL EV F+ PVI+ +YPK IK+FYM+LNDD KTV  MDVL PK+GE+IGGS+RE  YD + +R  +MG+P +   WYLD RR+GT  HSGFGLGFER++ F+
Sbjct:  266 AEEFIKYCVQWALDNCMDDISFLSEHFDKELIDRLKFVLEKPFVRLAYTEGIRILEEAVKNGVKFEFPIYWGADLASEHERYLVEVHFKTPVIMTDYPKEIKSFYMKLNDDGKTVRGMDVLFPKIGEIIGGSEREADYDKLVARANEMGVPEKDIWWYLDSRRYGTAPHSGFGLGFERLLLFV 448          
BLAST of CN192013 vs. ExPASy Swiss-Prot
Match: SYN_PORG3 (Asparaginyl-tRNA synthetase OS=Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / JCM 12257) GN=asnS PE=3 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 4.118e-54
Identity = 97/183 (53.01%), Postives = 128/183 (69.95%), Query Frame = 3
Query:    6 AEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMISFL 554
            AE ++K+   W LD+C DD+ F+++++DK  I+RL+ V   PF R+ YT          K G  FE  + WG DLASEHERYL EV F+ PVI+ +YPK IK+FYM+LNDD KTV  MDVL PK+GE+IGGS+RE  YD + +R  +MG+P +   WYLD RR+GT  HSGFGLGFER++ F+
Sbjct:  266 AEEFIKYCVQWALDNCMDDISFLSEHFDKELIDRLKFVLEKPFVRLAYTEGIRILEEAVKNGVKFEFPIYWGADLASEHERYLVEVHFKTPVIMTDYPKEIKSFYMKLNDDGKTVRGMDVLFPKIGEIIGGSEREADYDKLVARANEMGVPEKDIWWYLDSRRYGTAPHSGFGLGFERLLLFV 448          
BLAST of CN192013 vs. ExPASy Swiss-Prot
Match: SYN_SYNP2 (Asparaginyl-tRNA synthetase OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=asnS PE=3 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 7.024e-54
Identity = 104/183 (56.83%), Postives = 129/183 (70.49%), Query Frame = 3
Query:    6 AEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMISFL 554
            AE +++++  ++L+ C +DMEF  K  D S +   + +    F RITYT          K  K FE  VEWGIDL SEHERYL E  F+KP+IV NYPK IKAFYMRLNDD KTVAAMDVL PK+GE+IGGSQREER DV++ RI++M +      WYLDLRRFGTV H+GFGLGFER++ F+
Sbjct:  260 AEEFLRYIFKYVLEACPEDMEFFNKRIDNSVLATAQNIIENEFARITYTEAIALLE---KSNKTFEFPVEWGIDLQSEHERYLAEDLFKKPLIVSNYPKDIKAFYMRLNDDQKTVAAMDVLAPKIGEIIGGSQREERLDVLERRIQEMNIEAADLWWYLDLRRFGTVPHAGFGLGFERLVQFM 439          
BLAST of CN192013 vs. ExPASy Swiss-Prot
Match: SYN_ACTSZ (Asparaginyl-tRNA synthetase OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=asnS PE=3 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 9.174e-54
Identity = 106/183 (57.92%), Postives = 130/183 (71.04%), Query Frame = 3
Query:    6 AEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMISFL 554
            AE  +K++ + +L    DD+EF +K+ DK  I RL    ++PF +I YT          K GK FE  V WGIDL+SEHERYL E  F+ PV+V NYPKGIKAFYMRLNDD KTVAAMDVL P +GE+IGGSQREER DV+  R+ +MGL  E Y WY DLR++GTV HSGFGLGFER+I ++
Sbjct:  267 AEDMLKYVFNAVLTERRDDLEFFSKHVDKDVITRLEHFVNSPFAQIDYTDAIDVLV---KSGKKFEFPVSWGIDLSSEHERYLAEEHFKSPVVVKNYPKGIKAFYMRLNDDGKTVAAMDVLAPGIGEIIGGSQREERLDVLDKRMVEMGLKPEDYWWYRDLRKYGTVPHSGFGLGFERLIVYV 446          
BLAST of CN192013 vs. ExPASy Swiss-Prot
Match: SYN_SALTY (Asparaginyl-tRNA synthetase OS=Salmonella typhimurium GN=asnS PE=3 SV=2)

HSP 1 Score: 208.379 bits (529), Expect = 2.044e-53
Identity = 105/183 (57.38%), Postives = 131/183 (71.58%), Query Frame = 3
Query:    6 AEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMISFL 554
            AEA +K++ + +L+   DDM+F A+  DK  I RL    ST F ++ YT            GK FEN V WG+DL+SEHERYL E  F+ PV+V NYPK IKAFYMRLN+D KTVAAMDVL P +GE+IGGSQREER DV+ +R+ +MGL  E Y WY DLRR+GTV HSGFGLGFER+I+++
Sbjct:  266 AEAMLKYVFNAVLEERADDMKFFAERVDKDAIARLERFVSTDFAQVDYTDAVAILERC---GKTFENPVFWGVDLSSEHERYLAEEHFKAPVVVKNYPKEIKAFYMRLNEDGKTVAAMDVLAPGIGEIIGGSQREERLDVLDARMAEMGLNKEDYWWYRDLRRYGTVPHSGFGLGFERLIAYV 445          
BLAST of CN192013 vs. ExPASy Swiss-Prot
Match: SYN_SALCH (Asparaginyl-tRNA synthetase OS=Salmonella choleraesuis GN=asnS PE=3 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 2.044e-53
Identity = 105/183 (57.38%), Postives = 131/183 (71.58%), Query Frame = 3
Query:    6 AEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMISFL 554
            AEA +K++ + +L+   DDM+F A+  DK  I RL    ST F ++ YT            GK FEN V WG+DL+SEHERYL E  F+ PV+V NYPK IKAFYMRLN+D KTVAAMDVL P +GE+IGGSQREER DV+ +R+ +MGL  E Y WY DLRR+GTV HSGFGLGFER+I+++
Sbjct:  266 AEAMLKYVFNAVLEERADDMKFFAERVDKDAIARLERFVSTDFAQVDYTEAVAILERC---GKTFENPVFWGVDLSSEHERYLAEEHFKAPVVVKNYPKEIKAFYMRLNEDGKTVAAMDVLAPGIGEIIGGSQREERLDVLDARMAEMGLNKEDYWWYRDLRRYGTVPHSGFGLGFERLIAYV 445          
The following BLAST results are available for this feature:
BLAST of CN192013 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 301
Match NameE-valueIdentityDescription
SYNC1_ARATH3.233e-8379.23Asparaginyl-tRNA synthetase, cytoplasmic 1 OS=Arab... [more]
SYNC3_ARATH1.836e-7876.76Asparaginyl-tRNA synthetase, cytoplasmic 3 OS=Arab... [more]
SYN_PARUW1.848e-5456.83Asparaginyl-tRNA synthetase OS=Protochlamydia amoe... [more]
SYN_THEEB4.118e-5455.19Asparaginyl-tRNA synthetase OS=Thermosynechococcus... [more]
SYN_PORGI4.118e-5453.01Asparaginyl-tRNA synthetase OS=Porphyromonas gingi... [more]
SYN_PORG34.118e-5453.01Asparaginyl-tRNA synthetase OS=Porphyromonas gingi... [more]
SYN_SYNP27.024e-5456.83Asparaginyl-tRNA synthetase OS=Synechococcus sp. (... [more]
SYN_ACTSZ9.174e-5457.92Asparaginyl-tRNA synthetase OS=Actinobacillus succ... [more]
SYN_SALTY2.044e-5357.38Asparaginyl-tRNA synthetase OS=Salmonella typhimur... [more]
SYN_SALCH2.044e-5357.38Asparaginyl-tRNA synthetase OS=Salmonella cholerae... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0006D10_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0006D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN192013 ID=CN192013; Name=CN192013; organism=Citrus sinensis; type=EST; length=571bp
ACTGTGCGGAGGCATACGTGAAATTTATGTGTGACTGGTTACTTGACCAT
TGCTTTGACGACATGGAGTTTATGGCTAAAAATTATGATAAAAGTTGCAT
TAACCGTCTAAGAATGGTTGCTTCAACTCCCTTTGAACGCATAACATACA
CTGAAGCAGTAGAGCTACTAGAGGTTGCTGTGAAGGAGGGGAAACATTTT
GAGAATAAAGTGGAGTGGGGGATTGATTTGGCATCTGAGCATGAAAGATA
CTTAACTGAGGTCAAATTTCAGAAGCCTGTCATTGTGTACAACTATCCAA
AAGGAATCAAAGCATTTTACATGAGGCTCAATGATGACTTGAAGACTGTG
GCAGCTATGGATGTCCTTGTACCTAAGGTAGGAGAGTTAATTGGTGGGAG
CCAAAGGGAAGAGCGTTATGATGTAATCAAGAGCAGAATAGAGGACATGG
GACTCCCTCTTGAACCATACGAGTGGTACCTTGACCTGCGGCGCTTTGGG
ACAGTGAAACATAGTGGGTTTGGCTTAGGCTTTGAACGGATGATTTCTTT
TTTGCCACAGGCATCGACAAC
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