CN192004

Overview
NameCN192004
Unique NameCN192004
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length572
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9208 contig Csv1_Contig9208:371..942. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN192004 vs. ExPASy Swiss-Prot
Match: SDL5A_SOYBN (Dynamin-related protein 5A OS=Glycine max PE=2 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 5.636e-51
Identity = 98/105 (93.33%), Postives = 104/105 (99.05%), Query Frame = -1
Query:  255 THSIFDRYNDSYLRRIGTTVLSYVNMVCASLRNSIPKSIVYCQVREAKRSLLDHFFTELGKLEQKRLSNLLNEDPAVMERRSALAKRLELYRSAQSEIDAVAWSK 569
            THSIFDRYNDSYLRRIGTT+LSYVNMVCA+LRNSIPKSIVYCQVREAKRSLLDHFFTELGK+E KRLS+LLNEDPA+MERRSALAKRLELYRSAQ+EIDAVAWSK
Sbjct:  506 THSIFDRYNDSYLRRIGTTILSYVNMVCATLRNSIPKSIVYCQVREAKRSLLDHFFTELGKMETKRLSSLLNEDPAIMERRSALAKRLELYRSAQAEIDAVAWSK 610          
BLAST of CN192004 vs. ExPASy Swiss-Prot
Match: SDLCA_SOYBN (Dynamin-related protein 12A OS=Glycine max PE=1 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 3.093e-49
Identity = 96/105 (91.43%), Postives = 103/105 (98.10%), Query Frame = -1
Query:  255 THSIFDRYNDSYLRRIGTTVLSYVNMVCASLRNSIPKSIVYCQVREAKRSLLDHFFTELGKLEQKRLSNLLNEDPAVMERRSALAKRLELYRSAQSEIDAVAWSK 569
            THSI DRYNDSYLRRIGTT+LSYVNMVCA+LR+SIPKSIVYCQVREAKRSLLDHFFTELGK+E KRLS+LLNEDPA+MERRSALAKRLELYRSAQ+EIDAVAWSK
Sbjct:  506 THSICDRYNDSYLRRIGTTILSYVNMVCATLRHSIPKSIVYCQVREAKRSLLDHFFTELGKMEIKRLSSLLNEDPAIMERRSALAKRLELYRSAQAEIDAVAWSK 610          
BLAST of CN192004 vs. ExPASy Swiss-Prot
Match: DRP1A_ARATH (Dynamin-related protein 1A OS=Arabidopsis thaliana GN=DRP1A PE=1 SV=3)

HSP 1 Score: 189.889 bits (481), Expect = 7.617e-48
Identity = 92/105 (87.62%), Postives = 100/105 (95.24%), Query Frame = -1
Query:  255 THSIFDRYNDSYLRRIGTTVLSYVNMVCASLRNSIPKSIVYCQVREAKRSLLDHFFTELGKLEQKRLSNLLNEDPAVMERRSALAKRLELYRSAQSEIDAVAWSK 569
            THSIFDRYNDSYLRRIG+ VLSYVNMVCA LRNSIPKSIVYCQVREAKRSLLDHFF ELG ++ KRLS+LLNEDPA+MERRSA++KRLELYR+AQSEIDAVAWSK
Sbjct:  506 THSIFDRYNDSYLRRIGSNVLSYVNMVCAGLRNSIPKSIVYCQVREAKRSLLDHFFAELGTMDMKRLSSLLNEDPAIMERRSAISKRLELYRAAQSEIDAVAWSK 610          
BLAST of CN192004 vs. ExPASy Swiss-Prot
Match: DRP1B_ARATH (Dynamin-related protein 1B OS=Arabidopsis thaliana GN=DRP1B PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 2.536e-43
Identity = 85/105 (80.95%), Postives = 97/105 (92.38%), Query Frame = -1
Query:  255 THSIFDRYNDSYLRRIGTTVLSYVNMVCASLRNSIPKSIVYCQVREAKRSLLDHFFTELGKLEQKRLSNLLNEDPAVMERRSALAKRLELYRSAQSEIDAVAWSK 569
            THSIFDRYND+YLRRIG+ VLSYVNMVCA LRNSIPKSIVYCQVREAKRSLLD FFTELG+ E  +LS LL+EDPAV +RR+++AKRLELYRSAQ++I+AVAWSK
Sbjct:  506 THSIFDRYNDAYLRRIGSNVLSYVNMVCAGLRNSIPKSIVYCQVREAKRSLLDIFFTELGQKEMSKLSKLLDEDPAVQQRRTSIAKRLELYRSAQTDIEAVAWSK 610          
BLAST of CN192004 vs. ExPASy Swiss-Prot
Match: DRP1C_ARATH (Dynamin-related protein 1C OS=Arabidopsis thaliana GN=DRP1C PE=1 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 1.885e-30
Identity = 58/98 (59.18%), Postives = 83/98 (84.69%), Query Frame = -1
Query:  261 DRYNDSYLRRIGTTVLSYVNMVCASLRNSIPKSIVYCQVREAKRSLLDHFFTELGKLEQKRLSNLLNEDPAVMERRSALAKRLELYRSAQSEIDAVAW 554
            D Y+D++ R+IG+ V +Y+NMVC +LRNS+PK++VYCQVREAKRSLL+ F+ ++G+ E+++L  +L+EDP +MERR  LAKRLELY+ A+ +IDAVAW
Sbjct:  516 DPYSDNHFRKIGSNVSAYINMVCDTLRNSLPKAVVYCQVREAKRSLLNFFYAQVGRKEKEKLGAMLDEDPQLMERRGTLAKRLELYKQARDDIDAVAW 613          
BLAST of CN192004 vs. ExPASy Swiss-Prot
Match: DRP1E_ARATH (Dynamin-related protein 1E OS=Arabidopsis thaliana GN=DRP1E PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.951e-27
Identity = 57/98 (58.16%), Postives = 78/98 (79.59%), Query Frame = -1
Query:  261 DRYNDSYLRRIGTTVLSYVNMVCASLRNSIPKSIVYCQVREAKRSLLDHFFTELGKLEQKRLSNLLNEDPAVMERRSALAKRLELYRSAQSEIDAVAW 554
            D+Y D + RRI + V +YVNMV  +LRN+IPK+ VYCQVR+AK +LL++F++++ K E K+L  LL+EDPA+M+RR   AKRLELY+ A+ EIDAVAW
Sbjct:  525 DQYGDGHFRRIASNVSAYVNMVSDTLRNTIPKACVYCQVRQAKLALLNYFYSQISKREGKQLGQLLDEDPALMDRRLECAKRLELYKKARDEIDAVAW 622          
BLAST of CN192004 vs. ExPASy Swiss-Prot
Match: DRP1D_ARATH (Dynamin-related protein 1D OS=Arabidopsis thaliana GN=DRP1D PE=2 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 9.061e-25
Identity = 51/101 (50.50%), Postives = 75/101 (74.26%), Query Frame = -1
Query:  261 SIFDRYNDSYLRRIGTTVLSYVNMVCASLRNSIPKSIVYCQVREAKRSLLDHFFTELGKLEQKRLSNLLNEDPAVMERRSALAKRLELYRSAQSEIDAVAW 563
            S  D+Y D + R+I + V +Y+ MV  +L N+IPK++V+CQVR+AK SLL++F+ ++ + + KRL  LL+E+PA+MERR   AKRLELY+ A+ EIDA  W
Sbjct:  510 SAIDQYGDGHFRKIASNVAAYIKMVAETLVNTIPKAVVHCQVRQAKLSLLNYFYAQISQSQGKRLGQLLDENPALMERRMQCAKRLELYKKARDEIDAAVW 610          
The following BLAST results are available for this feature:
BLAST of CN192004 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
SDL5A_SOYBN5.636e-5193.33Dynamin-related protein 5A OS=Glycine max PE=2 SV=... [more]
SDLCA_SOYBN3.093e-4991.43Dynamin-related protein 12A OS=Glycine max PE=1 SV... [more]
DRP1A_ARATH7.617e-4887.62Dynamin-related protein 1A OS=Arabidopsis thaliana... [more]
DRP1B_ARATH2.536e-4380.95Dynamin-related protein 1B OS=Arabidopsis thaliana... [more]
DRP1C_ARATH1.885e-3059.18Dynamin-related protein 1C OS=Arabidopsis thaliana... [more]
DRP1E_ARATH1.951e-2758.16Dynamin-related protein 1E OS=Arabidopsis thaliana... [more]
DRP1D_ARATH9.061e-2550.50Dynamin-related protein 1D OS=Arabidopsis thaliana... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0006D06_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0006D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN192004 ID=CN192004; Name=CN192004; organism=Citrus sinensis; type=EST; length=572bp
CCTTTTTTTTTTGAAGCCGAAAATTCGTATATTATAGGCAACACATAAGA
GTCCCTTATGAAAACAACAGAACATTTAATAATATCACACAATAAAATAT
GCCTAATCACACCTTGACTACTAGTTAGGGTATAGAAATATAATGAAATA
TCCCGCCGCTTTCTCCCCTGCATGGCTAGTCATAATTGAAAGAATGACAG
TCACCATCAAGCCAAAATTCGTGAGCTGAAATGGACTGGTAAAATGTTGA
ACTACTTTGACCAAGCAACTGCATCAATTTCTGATTGTGCACTCCTGTAT
AACTCCAACCTTTTTGCAAGGGCAGATCGTCGCTCCATGACTGCCGGATC
TTCATTCAACAGGTTTGACAATCGTTTTTGCTCCAATTTACCCAATTCAG
TGAAGAAATGATCAAGTAGGCTTCGTTTGGCCTCACGAACTTGACAATAA
ACGATGGACTTAGGAATTGAGTTCCGCAGACTTGCACAGACCATATTGAC
ATAAGACAAGACCGTGGTTCCAATTCTCCTTAGATACGAATCATTGTATC
TGTCAAAAATTGAATGTGTCCT
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