CX301800

Overview
NameCX301800
Unique NameCX301800
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length651
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX301800 vs. ExPASy Swiss-Prot
Match: RL18A_ORYSJ (60S ribosomal protein L18a OS=Oryza sativa subsp. japonica GN=RPL18A PE=2 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 1.512e-56
Identity = 97/171 (56.73%), Postives = 133/171 (77.78%), Query Frame = 2
Query:   11 RMRLYQVIGRKAPTKNDENPPAYRMKIFAPNEVIAKSRFWYFMHQMRKMKKTTGEILDVNEITEKNPTSIKNFGIWVKYNSRSGTHNMYREYRDVTLNGAIDNLYNDMAGRHRARFESIQIIRTATVADADCKRNTTLQYHAADLKYPLPHRVLRAPSKQLRNLFSAKRPH 523
            R   YQV+GR  PT  DE+P  YRMK++A NEV AKS+FWYF+ +++K+KK+ G+IL +NEI EKNPT+IKN+GIW++Y SR+G HNMY+EYRD TLNGA++ +Y +MA RHR RF  IQII+TATV    CKR+ T Q+H +D+K+PL +R +R P+++L+  F A RP+
Sbjct:    5 RFHQYQVVGRGLPTPTDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQILAINEIFEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQIIKTATVHFKLCKRDNTKQFHKSDIKFPLVYRKVRPPTRKLKTTFKASRPN 175          
BLAST of CX301800 vs. ExPASy Swiss-Prot
Match: R18A3_ARATH (60S ribosomal protein L18a-3 OS=Arabidopsis thaliana GN=RPL18AC PE=2 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 3.723e-55
Identity = 94/171 (54.97%), Postives = 130/171 (76.02%), Query Frame = 2
Query:   11 RMRLYQVIGRKAPTKNDENPPAYRMKIFAPNEVIAKSRFWYFMHQMRKMKKTTGEILDVNEITEKNPTSIKNFGIWVKYNSRSGTHNMYREYRDVTLNGAIDNLYNDMAGRHRARFESIQIIRTATVADADCKRNTTLQYHAADLKYPLPHRVLRAPSKQLRNLFSAKRPH 523
            R   YQV+GR  PT+NDE+P  YRMK++  NEV AKS+FWYFM +++K+KK+ G++L +NEI EKNPT+IKN+GIW++Y SR+G HNMY+EYRD TLNG ++ +Y +MA RHR RF  IQII+TATV    CKR  T Q+H + +K+PL  R +R PS++L+  + A +P+
Sbjct:    5 RFHQYQVVGRALPTENDEHPKIYRMKLWGRNEVCAKSKFWYFMRKLKKVKKSNGQMLAINEIFEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGGVEQMYTEMASRHRVRFPCIQIIKTATVPAKLCKREITKQFHNSKIKFPLVFRKVRPPSRKLKTTYKASKPN 175          
BLAST of CX301800 vs. ExPASy Swiss-Prot
Match: R18A2_ARATH (60S ribosomal protein L18a-2 OS=Arabidopsis thaliana GN=RPL18AB PE=1 SV=2)

HSP 1 Score: 212.616 bits (540), Expect = 1.415e-54
Identity = 94/171 (54.97%), Postives = 130/171 (76.02%), Query Frame = 2
Query:   11 RMRLYQVIGRKAPTKNDENPPAYRMKIFAPNEVIAKSRFWYFMHQMRKMKKTTGEILDVNEITEKNPTSIKNFGIWVKYNSRSGTHNMYREYRDVTLNGAIDNLYNDMAGRHRARFESIQIIRTATVADADCKRNTTLQYHAADLKYPLPHRVLRAPSKQLRNLFSAKRPH 523
            R   YQV+GR  PT+ D  P  YRMK++A NEV AKS+FWYF+ +++K+KK+ G++L +NEI EKNPT+IKNFGIW++Y SR+G HNMY+EYRD TLNGA++ +Y +MA RHR RF  IQII+TATV    CKR +T Q+H + +K+PL  R +R PS++L+  + A +P+
Sbjct:    5 RFHQYQVVGRALPTEKDVQPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIYEKNPTTIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQIIKTATVPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLKTTYKANKPN 175          
BLAST of CX301800 vs. ExPASy Swiss-Prot
Match: RL18A_CASSA (60S ribosomal protein L18a OS=Castanea sativa GN=RPL18A PE=2 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.198e-53
Identity = 92/171 (53.80%), Postives = 131/171 (76.61%), Query Frame = 2
Query:   11 RMRLYQVIGRKAPTKNDENPPAYRMKIFAPNEVIAKSRFWYFMHQMRKMKKTTGEILDVNEITEKNPTSIKNFGIWVKYNSRSGTHNMYREYRDVTLNGAIDNLYNDMAGRHRARFESIQIIRTATVADADCKRNTTLQYHAADLKYPLPHRVLRAPSKQLRNLFSAKRPH 523
            R   YQV+GR  P++ DE+P  YRMK++A NEV AKS+FWYF+ +++K+KK+ G++L +NEI EKNPT IKN+GIW++Y SR+G HNMY+EYRD TLNGA++ +Y +MA RHR RF  IQII+TAT+    CKR ++ Q+H + +K+PL  R +R PS++L+  + A RP+
Sbjct:    5 RFHQYQVVGRGLPSETDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYIEMASRHRVRFPCIQIIKTATIPAKLCKRESSKQFHNSKIKFPLVTRKIRPPSRKLKTHYKASRPN 175          
BLAST of CX301800 vs. ExPASy Swiss-Prot
Match: RL18A_HUMAN (60S ribosomal protein L18a OS=Homo sapiens GN=RPL18A PE=1 SV=2)

HSP 1 Score: 206.068 bits (523), Expect = 1.324e-52
Identity = 94/173 (54.34%), Postives = 127/173 (73.41%), Query Frame = 2
Query:   14 MRLYQVIGRKAPTKNDENPPAYRMKIFAPNEVIAKSRFWYFMHQMRKMKKTTGEILDVNEITEKNPTSIKNFGIWVKYNSRSGTHNMYREYRDVTLNGAIDNLYNDMAGRHRARFESIQIIRTATVADADCKRNTTLQYHAADLKYPLPHRVLRAPSKQLRNLFSAKRPHTHF 532
            +R Y+V+GR  PT     PP YRM+IFAPN V+AKSRFWYF+ Q++KMKK++GEI+   ++ EK+P  +KNFGIW++Y+SRSGTHNMYREYRD+T  GA+   Y DM  RHRAR  SIQI++   +A + C+R    Q+H + +K+PLPHRVLR   +Q +  F+ KRP+T F
Sbjct:    7 LREYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQVFEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMKVEEIAASKCRRPAVKQFHDSKIKFPLPHRVLR---RQHKPRFTTKRPNTFF 176          
BLAST of CX301800 vs. ExPASy Swiss-Prot
Match: RL18A_BOVIN (60S ribosomal protein L18a OS=Bos taurus GN=RPL18A PE=2 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.324e-52
Identity = 94/173 (54.34%), Postives = 127/173 (73.41%), Query Frame = 2
Query:   14 MRLYQVIGRKAPTKNDENPPAYRMKIFAPNEVIAKSRFWYFMHQMRKMKKTTGEILDVNEITEKNPTSIKNFGIWVKYNSRSGTHNMYREYRDVTLNGAIDNLYNDMAGRHRARFESIQIIRTATVADADCKRNTTLQYHAADLKYPLPHRVLRAPSKQLRNLFSAKRPHTHF 532
            +R Y+V+GR  PT     PP YRM+IFAPN V+AKSRFWYF+ Q++KMKK++GEI+   ++ EK+P  +KNFGIW++Y+SRSGTHNMYREYRD+T  GA+   Y DM  RHRAR  SIQI++   +A + C+R    Q+H + +K+PLPHRVLR   +Q +  F+ KRP+T F
Sbjct:    7 LREYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQVFEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMKVEEIAASKCRRPAVKQFHDSKIKFPLPHRVLR---RQHKPRFTTKRPNTFF 176          
BLAST of CX301800 vs. ExPASy Swiss-Prot
Match: RL18A_RAT (60S ribosomal protein L18a OS=Rattus norvegicus GN=Rpl18a PE=2 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 1.729e-52
Identity = 94/173 (54.34%), Postives = 126/173 (72.83%), Query Frame = 2
Query:   14 MRLYQVIGRKAPTKNDENPPAYRMKIFAPNEVIAKSRFWYFMHQMRKMKKTTGEILDVNEITEKNPTSIKNFGIWVKYNSRSGTHNMYREYRDVTLNGAIDNLYNDMAGRHRARFESIQIIRTATVADADCKRNTTLQYHAADLKYPLPHRVLRAPSKQLRNLFSAKRPHTHF 532
            +R Y+V+GR  PT     PP YRM+IFAPN V+AKSRFWYF+ Q++KMKK++GEI+   ++ EK+P  +KNFGIW++Y+SRSGTHNMYREYRD+T  GA+   Y DM  RHRAR  SIQI++   +A   C+R    Q+H + +K+PLPHRVLR   +Q +  F+ KRP+T F
Sbjct:    7 LREYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQVFEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMKVEEIAAGKCRRPAVKQFHDSKIKFPLPHRVLR---RQHKPRFTTKRPNTFF 176          
BLAST of CX301800 vs. ExPASy Swiss-Prot
Match: RL18A_MOUSE (60S ribosomal protein L18a OS=Mus musculus GN=Rpl18a PE=1 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 1.729e-52
Identity = 94/173 (54.34%), Postives = 126/173 (72.83%), Query Frame = 2
Query:   14 MRLYQVIGRKAPTKNDENPPAYRMKIFAPNEVIAKSRFWYFMHQMRKMKKTTGEILDVNEITEKNPTSIKNFGIWVKYNSRSGTHNMYREYRDVTLNGAIDNLYNDMAGRHRARFESIQIIRTATVADADCKRNTTLQYHAADLKYPLPHRVLRAPSKQLRNLFSAKRPHTHF 532
            +R Y+V+GR  PT     PP YRM+IFAPN V+AKSRFWYF+ Q++KMKK++GEI+   ++ EK+P  +KNFGIW++Y+SRSGTHNMYREYRD+T  GA+   Y DM  RHRAR  SIQI++   +A   C+R    Q+H + +K+PLPHRVLR   +Q +  F+ KRP+T F
Sbjct:    7 LREYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQVFEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMKVEEIAAGKCRRPAVKQFHDSKIKFPLPHRVLR---RQHKPRFTTKRPNTFF 176          
BLAST of CX301800 vs. ExPASy Swiss-Prot
Match: RL18A_DANRE (60S ribosomal protein L18a OS=Danio rerio GN=rpl18a PE=2 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 1.121e-51
Identity = 93/173 (53.76%), Postives = 126/173 (72.83%), Query Frame = 2
Query:   14 MRLYQVIGRKAPTKNDENPPAYRMKIFAPNEVIAKSRFWYFMHQMRKMKKTTGEILDVNEITEKNPTSIKNFGIWVKYNSRSGTHNMYREYRDVTLNGAIDNLYNDMAGRHRARFESIQIIRTATVADADCKRNTTLQYHAADLKYPLPHRVLRAPSKQLRNLFSAKRPHTHF 532
            +R Y+V+GR  P+  +  PP YRM+IFAPN V+AKSRFWYF+ Q+RKMKK +GEI+    + EK+P  +KNFGIW++Y+SRSGTHNMYREYRD+T +GA+   Y DM  RHRAR  +IQI++   +A   C+R    Q+H + +K+PLPHRVLR   +Q +  F+ KRP+T F
Sbjct:    7 LREYKVVGRLLPSVKNPAPPLYRMRIFAPNHVVAKSRFWYFVSQLRKMKKASGEIVYCGLVFEKSPLKVKNFGIWLRYDSRSGTHNMYREYRDLTTSGAVTQCYRDMGARHRARAHAIQIMKVQVIAANKCRRPAIKQFHDSKIKFPLPHRVLR---RQHKPRFTTKRPNTFF 176          
BLAST of CX301800 vs. ExPASy Swiss-Prot
Match: RL18A_SPOFR (60S ribosomal protein L18a OS=Spodoptera frugiperda GN=RpL18A PE=2 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 4.260e-51
Identity = 90/173 (52.02%), Postives = 128/173 (73.99%), Query Frame = 2
Query:   14 MRLYQVIGRKAPTKNDENPPAYRMKIFAPNEVIAKSRFWYFMHQMRKMKKTTGEILDVNEITEKNPTSIKNFGIWVKYNSRSGTHNMYREYRDVTLNGAIDNLYNDMAGRHRARFESIQIIRTATVADADCKRNTTLQYHAADLKYPLPHRVLRAPSKQLRNLFSAKRPHTHF 532
            ++ Y+VIGRK P++++  PP Y+M+IF+P++++AKSRFWYF+ Q++K KKTTGEI+ + EI EK+P  IKNFGIW++Y SRSG HNMYREYRD+++ GA+   Y DM  RHRAR  SIQII+   +  + C+R    Q+H + +++PLP RV     K+L N F+ KRP T+F
Sbjct:    7 LKEYEVIGRKLPSESEPKPPLYKMRIFSPDQIVAKSRFWYFLRQLKKFKKTTGEIVSIREIPEKSPVKIKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQIIKVEVIKASACRRPQVKQFHNSTIRFPLPKRVHH--HKRL-NTFAYKRPSTYF 176          
The following BLAST results are available for this feature:
BLAST of CX301800 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
RL18A_ORYSJ1.512e-5656.7360S ribosomal protein L18a OS=Oryza sativa subsp. ... [more]
R18A3_ARATH3.723e-5554.9760S ribosomal protein L18a-3 OS=Arabidopsis thalia... [more]
R18A2_ARATH1.415e-5454.9760S ribosomal protein L18a-2 OS=Arabidopsis thalia... [more]
RL18A_CASSA1.198e-5353.8060S ribosomal protein L18a OS=Castanea sativa GN=R... [more]
RL18A_HUMAN1.324e-5254.3460S ribosomal protein L18a OS=Homo sapiens GN=RPL1... [more]
RL18A_BOVIN1.324e-5254.3460S ribosomal protein L18a OS=Bos taurus GN=RPL18A... [more]
RL18A_RAT1.729e-5254.3460S ribosomal protein L18a OS=Rattus norvegicus GN... [more]
RL18A_MOUSE1.729e-5254.3460S ribosomal protein L18a OS=Mus musculus GN=Rpl1... [more]
RL18A_DANRE1.121e-5153.7660S ribosomal protein L18a OS=Danio rerio GN=rpl18... [more]
RL18A_SPOFR4.260e-5152.0260S ribosomal protein L18a OS=Spodoptera frugiperd... [more]

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Properties
Property NameValue
Genbank descriptionC08013G03SK PhyRootSw1 Citrus sinensis cDNA clone C08013G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX301800 ID=CX301800; Name=CX301800; organism=Citrus sinensis; type=EST; length=651bp
CACGATGGCAAGAATGAGATTATATCAAGTAATTGGCCGCAAGGCTCCTA
CCAAGAACGACGAGAATCCTCCTGCTTACCGCATGAAGATCTTCGCTCCA
AATGAAGTGATCGCCAAGTCTCGTTTCTGGTACTTCATGCACCAAATGAG
AAAGATGAAGAAGACCACTGGTGAGATCTTAGACGTCAACGAGATCACCG
AGAAGAACCCTACCTCCATCAAGAACTTCGGTATCTGGGTCAAGTACAAC
TCTCGCTCTGGAACCCATAATATGTATCGTGAATACCGTGACGTAACCCT
CAACGGCGCCATCGACAACTTATATAACGACATGGCTGGACGTCACCGTG
CTCGCTTCGAATCCATCCAGATCATCCGCACTGCCACTGTCGCTGATGCT
GATTGCAAGAGAAACACCACTCTCCAGTACCATGCTGCTGACTTGAAGTA
CCCACTTCCTCACCGTGTCTTAAGAGCCCCAAGCAAGCAGTTGAGAAACC
TCTTCTCTGCCAAGAGACCACACACCCACTTCGGTTAAACTCGATGCTAT
GTTCTGTCAATACGAATCATACACGCTCAGCCATCGTCCTCCTCATTGTA
TAATACCGAGGAGTCAGTGAATAAAGAATTGAAATGATAGTAAATAAATC
A
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