CX301800
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX301800 vs. ExPASy Swiss-Prot
Match: RL18A_ORYSJ (60S ribosomal protein L18a OS=Oryza sativa subsp. japonica GN=RPL18A PE=2 SV=1) HSP 1 Score: 219.164 bits (557), Expect = 1.512e-56 Identity = 97/171 (56.73%), Postives = 133/171 (77.78%), Query Frame = 2 Query: 11 RMRLYQVIGRKAPTKNDENPPAYRMKIFAPNEVIAKSRFWYFMHQMRKMKKTTGEILDVNEITEKNPTSIKNFGIWVKYNSRSGTHNMYREYRDVTLNGAIDNLYNDMAGRHRARFESIQIIRTATVADADCKRNTTLQYHAADLKYPLPHRVLRAPSKQLRNLFSAKRPH 523 R YQV+GR PT DE+P YRMK++A NEV AKS+FWYF+ +++K+KK+ G+IL +NEI EKNPT+IKN+GIW++Y SR+G HNMY+EYRD TLNGA++ +Y +MA RHR RF IQII+TATV CKR+ T Q+H +D+K+PL +R +R P+++L+ F A RP+ Sbjct: 5 RFHQYQVVGRGLPTPTDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQILAINEIFEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQIIKTATVHFKLCKRDNTKQFHKSDIKFPLVYRKVRPPTRKLKTTFKASRPN 175
BLAST of CX301800 vs. ExPASy Swiss-Prot
Match: R18A3_ARATH (60S ribosomal protein L18a-3 OS=Arabidopsis thaliana GN=RPL18AC PE=2 SV=1) HSP 1 Score: 214.542 bits (545), Expect = 3.723e-55 Identity = 94/171 (54.97%), Postives = 130/171 (76.02%), Query Frame = 2 Query: 11 RMRLYQVIGRKAPTKNDENPPAYRMKIFAPNEVIAKSRFWYFMHQMRKMKKTTGEILDVNEITEKNPTSIKNFGIWVKYNSRSGTHNMYREYRDVTLNGAIDNLYNDMAGRHRARFESIQIIRTATVADADCKRNTTLQYHAADLKYPLPHRVLRAPSKQLRNLFSAKRPH 523 R YQV+GR PT+NDE+P YRMK++ NEV AKS+FWYFM +++K+KK+ G++L +NEI EKNPT+IKN+GIW++Y SR+G HNMY+EYRD TLNG ++ +Y +MA RHR RF IQII+TATV CKR T Q+H + +K+PL R +R PS++L+ + A +P+ Sbjct: 5 RFHQYQVVGRALPTENDEHPKIYRMKLWGRNEVCAKSKFWYFMRKLKKVKKSNGQMLAINEIFEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGGVEQMYTEMASRHRVRFPCIQIIKTATVPAKLCKREITKQFHNSKIKFPLVFRKVRPPSRKLKTTYKASKPN 175
BLAST of CX301800 vs. ExPASy Swiss-Prot
Match: R18A2_ARATH (60S ribosomal protein L18a-2 OS=Arabidopsis thaliana GN=RPL18AB PE=1 SV=2) HSP 1 Score: 212.616 bits (540), Expect = 1.415e-54 Identity = 94/171 (54.97%), Postives = 130/171 (76.02%), Query Frame = 2 Query: 11 RMRLYQVIGRKAPTKNDENPPAYRMKIFAPNEVIAKSRFWYFMHQMRKMKKTTGEILDVNEITEKNPTSIKNFGIWVKYNSRSGTHNMYREYRDVTLNGAIDNLYNDMAGRHRARFESIQIIRTATVADADCKRNTTLQYHAADLKYPLPHRVLRAPSKQLRNLFSAKRPH 523 R YQV+GR PT+ D P YRMK++A NEV AKS+FWYF+ +++K+KK+ G++L +NEI EKNPT+IKNFGIW++Y SR+G HNMY+EYRD TLNGA++ +Y +MA RHR RF IQII+TATV CKR +T Q+H + +K+PL R +R PS++L+ + A +P+ Sbjct: 5 RFHQYQVVGRALPTEKDVQPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIYEKNPTTIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQIIKTATVPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLKTTYKANKPN 175
BLAST of CX301800 vs. ExPASy Swiss-Prot
Match: RL18A_CASSA (60S ribosomal protein L18a OS=Castanea sativa GN=RPL18A PE=2 SV=1) HSP 1 Score: 209.534 bits (532), Expect = 1.198e-53 Identity = 92/171 (53.80%), Postives = 131/171 (76.61%), Query Frame = 2 Query: 11 RMRLYQVIGRKAPTKNDENPPAYRMKIFAPNEVIAKSRFWYFMHQMRKMKKTTGEILDVNEITEKNPTSIKNFGIWVKYNSRSGTHNMYREYRDVTLNGAIDNLYNDMAGRHRARFESIQIIRTATVADADCKRNTTLQYHAADLKYPLPHRVLRAPSKQLRNLFSAKRPH 523 R YQV+GR P++ DE+P YRMK++A NEV AKS+FWYF+ +++K+KK+ G++L +NEI EKNPT IKN+GIW++Y SR+G HNMY+EYRD TLNGA++ +Y +MA RHR RF IQII+TAT+ CKR ++ Q+H + +K+PL R +R PS++L+ + A RP+ Sbjct: 5 RFHQYQVVGRGLPSETDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYIEMASRHRVRFPCIQIIKTATIPAKLCKRESSKQFHNSKIKFPLVTRKIRPPSRKLKTHYKASRPN 175
BLAST of CX301800 vs. ExPASy Swiss-Prot
Match: RL18A_HUMAN (60S ribosomal protein L18a OS=Homo sapiens GN=RPL18A PE=1 SV=2) HSP 1 Score: 206.068 bits (523), Expect = 1.324e-52 Identity = 94/173 (54.34%), Postives = 127/173 (73.41%), Query Frame = 2 Query: 14 MRLYQVIGRKAPTKNDENPPAYRMKIFAPNEVIAKSRFWYFMHQMRKMKKTTGEILDVNEITEKNPTSIKNFGIWVKYNSRSGTHNMYREYRDVTLNGAIDNLYNDMAGRHRARFESIQIIRTATVADADCKRNTTLQYHAADLKYPLPHRVLRAPSKQLRNLFSAKRPHTHF 532 +R Y+V+GR PT PP YRM+IFAPN V+AKSRFWYF+ Q++KMKK++GEI+ ++ EK+P +KNFGIW++Y+SRSGTHNMYREYRD+T GA+ Y DM RHRAR SIQI++ +A + C+R Q+H + +K+PLPHRVLR +Q + F+ KRP+T F Sbjct: 7 LREYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQVFEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMKVEEIAASKCRRPAVKQFHDSKIKFPLPHRVLR---RQHKPRFTTKRPNTFF 176
BLAST of CX301800 vs. ExPASy Swiss-Prot
Match: RL18A_BOVIN (60S ribosomal protein L18a OS=Bos taurus GN=RPL18A PE=2 SV=1) HSP 1 Score: 206.068 bits (523), Expect = 1.324e-52 Identity = 94/173 (54.34%), Postives = 127/173 (73.41%), Query Frame = 2 Query: 14 MRLYQVIGRKAPTKNDENPPAYRMKIFAPNEVIAKSRFWYFMHQMRKMKKTTGEILDVNEITEKNPTSIKNFGIWVKYNSRSGTHNMYREYRDVTLNGAIDNLYNDMAGRHRARFESIQIIRTATVADADCKRNTTLQYHAADLKYPLPHRVLRAPSKQLRNLFSAKRPHTHF 532 +R Y+V+GR PT PP YRM+IFAPN V+AKSRFWYF+ Q++KMKK++GEI+ ++ EK+P +KNFGIW++Y+SRSGTHNMYREYRD+T GA+ Y DM RHRAR SIQI++ +A + C+R Q+H + +K+PLPHRVLR +Q + F+ KRP+T F Sbjct: 7 LREYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQVFEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMKVEEIAASKCRRPAVKQFHDSKIKFPLPHRVLR---RQHKPRFTTKRPNTFF 176
BLAST of CX301800 vs. ExPASy Swiss-Prot
Match: RL18A_RAT (60S ribosomal protein L18a OS=Rattus norvegicus GN=Rpl18a PE=2 SV=1) HSP 1 Score: 205.682 bits (522), Expect = 1.729e-52 Identity = 94/173 (54.34%), Postives = 126/173 (72.83%), Query Frame = 2 Query: 14 MRLYQVIGRKAPTKNDENPPAYRMKIFAPNEVIAKSRFWYFMHQMRKMKKTTGEILDVNEITEKNPTSIKNFGIWVKYNSRSGTHNMYREYRDVTLNGAIDNLYNDMAGRHRARFESIQIIRTATVADADCKRNTTLQYHAADLKYPLPHRVLRAPSKQLRNLFSAKRPHTHF 532 +R Y+V+GR PT PP YRM+IFAPN V+AKSRFWYF+ Q++KMKK++GEI+ ++ EK+P +KNFGIW++Y+SRSGTHNMYREYRD+T GA+ Y DM RHRAR SIQI++ +A C+R Q+H + +K+PLPHRVLR +Q + F+ KRP+T F Sbjct: 7 LREYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQVFEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMKVEEIAAGKCRRPAVKQFHDSKIKFPLPHRVLR---RQHKPRFTTKRPNTFF 176
BLAST of CX301800 vs. ExPASy Swiss-Prot
Match: RL18A_MOUSE (60S ribosomal protein L18a OS=Mus musculus GN=Rpl18a PE=1 SV=1) HSP 1 Score: 205.682 bits (522), Expect = 1.729e-52 Identity = 94/173 (54.34%), Postives = 126/173 (72.83%), Query Frame = 2 Query: 14 MRLYQVIGRKAPTKNDENPPAYRMKIFAPNEVIAKSRFWYFMHQMRKMKKTTGEILDVNEITEKNPTSIKNFGIWVKYNSRSGTHNMYREYRDVTLNGAIDNLYNDMAGRHRARFESIQIIRTATVADADCKRNTTLQYHAADLKYPLPHRVLRAPSKQLRNLFSAKRPHTHF 532 +R Y+V+GR PT PP YRM+IFAPN V+AKSRFWYF+ Q++KMKK++GEI+ ++ EK+P +KNFGIW++Y+SRSGTHNMYREYRD+T GA+ Y DM RHRAR SIQI++ +A C+R Q+H + +K+PLPHRVLR +Q + F+ KRP+T F Sbjct: 7 LREYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQVFEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMKVEEIAAGKCRRPAVKQFHDSKIKFPLPHRVLR---RQHKPRFTTKRPNTFF 176
BLAST of CX301800 vs. ExPASy Swiss-Prot
Match: RL18A_DANRE (60S ribosomal protein L18a OS=Danio rerio GN=rpl18a PE=2 SV=1) HSP 1 Score: 202.986 bits (515), Expect = 1.121e-51 Identity = 93/173 (53.76%), Postives = 126/173 (72.83%), Query Frame = 2 Query: 14 MRLYQVIGRKAPTKNDENPPAYRMKIFAPNEVIAKSRFWYFMHQMRKMKKTTGEILDVNEITEKNPTSIKNFGIWVKYNSRSGTHNMYREYRDVTLNGAIDNLYNDMAGRHRARFESIQIIRTATVADADCKRNTTLQYHAADLKYPLPHRVLRAPSKQLRNLFSAKRPHTHF 532 +R Y+V+GR P+ + PP YRM+IFAPN V+AKSRFWYF+ Q+RKMKK +GEI+ + EK+P +KNFGIW++Y+SRSGTHNMYREYRD+T +GA+ Y DM RHRAR +IQI++ +A C+R Q+H + +K+PLPHRVLR +Q + F+ KRP+T F Sbjct: 7 LREYKVVGRLLPSVKNPAPPLYRMRIFAPNHVVAKSRFWYFVSQLRKMKKASGEIVYCGLVFEKSPLKVKNFGIWLRYDSRSGTHNMYREYRDLTTSGAVTQCYRDMGARHRARAHAIQIMKVQVIAANKCRRPAIKQFHDSKIKFPLPHRVLR---RQHKPRFTTKRPNTFF 176
BLAST of CX301800 vs. ExPASy Swiss-Prot
Match: RL18A_SPOFR (60S ribosomal protein L18a OS=Spodoptera frugiperda GN=RpL18A PE=2 SV=1) HSP 1 Score: 201.06 bits (510), Expect = 4.260e-51 Identity = 90/173 (52.02%), Postives = 128/173 (73.99%), Query Frame = 2 Query: 14 MRLYQVIGRKAPTKNDENPPAYRMKIFAPNEVIAKSRFWYFMHQMRKMKKTTGEILDVNEITEKNPTSIKNFGIWVKYNSRSGTHNMYREYRDVTLNGAIDNLYNDMAGRHRARFESIQIIRTATVADADCKRNTTLQYHAADLKYPLPHRVLRAPSKQLRNLFSAKRPHTHF 532 ++ Y+VIGRK P++++ PP Y+M+IF+P++++AKSRFWYF+ Q++K KKTTGEI+ + EI EK+P IKNFGIW++Y SRSG HNMYREYRD+++ GA+ Y DM RHRAR SIQII+ + + C+R Q+H + +++PLP RV K+L N F+ KRP T+F Sbjct: 7 LKEYEVIGRKLPSESEPKPPLYKMRIFSPDQIVAKSRFWYFLRQLKKFKKTTGEIVSIREIPEKSPVKIKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQIIKVEVIKASACRRPQVKQFHNSTIRFPLPKRVHH--HKRL-NTFAYKRPSTYF 176 The following BLAST results are available for this feature:
BLAST of CX301800 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 17
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Sequences
The
following sequences are available for this feature:
EST sequence >CX301800 ID=CX301800; Name=CX301800; organism=Citrus sinensis; type=EST; length=651bpback to top |