CN191963

Overview
NameCN191963
Unique NameCN191963
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length304
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig168 contig Csv1_Contig168:776..1079. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN191963 vs. ExPASy Swiss-Prot
Match: MPPB_ARATH (Probable mitochondrial-processing peptidase subunit beta OS=Arabidopsis thaliana GN=At3g02090 PE=1 SV=2)

HSP 1 Score: 176.792 bits (447), Expect = 3.024e-44
Identity = 84/99 (84.85%), Postives = 90/99 (90.91%), Query Frame = 3
Query:    6 DDIPLAQFAVAFAGASWTDPDSIARMVMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYETTK 302
            DD+PLAQFAVAF GASWTDPDS+A MVMQ MLGSWNKN  GGKH+GS+L QRV INEIAES+MAFNTNYKDTGLFGVYAVAK DCLDDL+YAIMYE TK
Sbjct:  331 DDLPLAQFAVAFEGASWTDPDSVALMVMQTMLGSWNKNVGGGKHVGSDLTQRVAINEIAESIMAFNTNYKDTGLFGVYAVAKADCLDDLSYAIMYEVTK 429          
BLAST of CN191963 vs. ExPASy Swiss-Prot
Match: MPPB_DICDI (Mitochondrial-processing peptidase subunit beta OS=Dictyostelium discoideum GN=mppB PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.413e-17
Identity = 41/96 (42.71%), Postives = 58/96 (60.42%), Query Frame = 3
Query:    6 DDIPLAQFAVAFAGASWTDPDSIARMVMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYE 293
            D+ PL  FAVA     WTDPD     ++Q M+G+WN+    GK++ S L + V   ++AES   F T Y+DTGLFG Y V +P+ +DDL   ++ E
Sbjct:  269 DEQPLIHFAVAVRALPWTDPDYFVLELIQTMIGNWNRGIAAGKNIASNLGEIVATEDLAESYSTFFTCYQDTGLFGNYGVCQPERVDDLVAEMLKE 364          
BLAST of CN191963 vs. ExPASy Swiss-Prot
Match: MPPB_RAT (Mitochondrial-processing peptidase subunit beta OS=Rattus norvegicus GN=Pmpcb PE=1 SV=3)

HSP 1 Score: 82.0333 bits (201), Expect = 1.014e-15
Identity = 37/96 (38.54%), Postives = 58/96 (60.42%), Query Frame = 3
Query:    6 DDIPLAQFAVAFAGASWTDPDSIARMVMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYE 293
            D +PLA  AVA     WT PD+I  MV   ++G+W+++  GG ++ S+LAQ      +  S  +FNT+Y DTGL+G+Y V +   + D+ +A+  E
Sbjct:  289 DKMPLAHLAVAIEAVGWTHPDTICLMVANTLIGNWDRSFGGGMNLSSKLAQLTCHGNLCHSFQSFNTSYTDTGLWGLYMVCEQATVADMLHAVQKE 384          
BLAST of CN191963 vs. ExPASy Swiss-Prot
Match: MPPB_BOVIN (Mitochondrial-processing peptidase subunit beta OS=Bos taurus GN=PMPCB PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.014e-15
Identity = 36/96 (37.50%), Postives = 57/96 (59.38%), Query Frame = 3
Query:    6 DDIPLAQFAVAFAGASWTDPDSIARMVMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYE 293
            D +PLA  AVA     W  PD+I  MV   ++G+W+++  GG ++ S+LAQ      +  S  +FNT+Y DTGL+G+Y V +P  + D+ + +  E
Sbjct:  290 DKMPLAHLAVAVEAVGWAHPDTICLMVANTLIGNWDRSFGGGMNLSSKLAQLTCHGNLCHSFQSFNTSYTDTGLWGIYMVCEPATVADMLHVVQKE 385          
BLAST of CN191963 vs. ExPASy Swiss-Prot
Match: MPPB_PONAB (Mitochondrial-processing peptidase subunit beta OS=Pongo abelii GN=PMPCB PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.324e-15
Identity = 35/96 (36.46%), Postives = 57/96 (59.38%), Query Frame = 3
Query:    6 DDIPLAQFAVAFAGASWTDPDSIARMVMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYE 293
            D +PLA  A+A     W  PD+I  MV   ++G+W+++  GG ++ S+LAQ      +  S  +FNT+Y DTGL+G+Y V +P  + D+ + +  E
Sbjct:  289 DKMPLAHLAIAVEAVGWAHPDTICLMVANTLIGNWDRSFGGGMNLSSKLAQLTCHGNLCHSFQSFNTSYTDTGLWGLYMVCEPSTVADMLHVVQKE 384          
BLAST of CN191963 vs. ExPASy Swiss-Prot
Match: MPPB_NEUCR (Mitochondrial-processing peptidase subunit beta OS=Neurospora crassa GN=pep PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.031e-15
Identity = 41/100 (41.00%), Postives = 63/100 (63.00%), Query Frame = 3
Query:    6 DDIPLAQFAVAFAGASWTDPDSIARMVMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFGVYAVA-KPDCLDDLAYAIMYETTK 302
            D IP A  A+A  G SW+D D    +V QA++G+++K      H GS+L+  V  +++A S M+F+T+Y DTGL+G+Y V  K D +DDL +  + E T+
Sbjct:  275 DTIPTANIAIAVEGVSWSDDDYFTGLVTQAIVGNYDKALGNAPHQGSKLSGFVHKHDLATSFMSFSTSYSDTGLWGIYLVTDKLDRVDDLVHFSLREWTR 374          
BLAST of CN191963 vs. ExPASy Swiss-Prot
Match: MPPB_HUMAN (Mitochondrial-processing peptidase subunit beta OS=Homo sapiens GN=PMPCB PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 1.121e-14
Identity = 34/96 (35.42%), Postives = 56/96 (58.33%), Query Frame = 3
Query:    6 DDIPLAQFAVAFAGASWTDPDSIARMVMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYE 293
            D +PLA  A+A     W  PD+I  MV   ++G+W+++  GG ++ S+LAQ      +  S  +FNT+Y DTGL+G+Y V +   + D+ + +  E
Sbjct:  289 DKMPLAHLAIAVEAVGWAHPDTICLMVANTLIGNWDRSFGGGMNLSSKLAQLTCHGNLCHSFQSFNTSYTDTGLWGLYMVCESSTVADMLHVVQKE 384          
BLAST of CN191963 vs. ExPASy Swiss-Prot
Match: MPPB_BLAEM (Mitochondrial-processing peptidase subunit beta OS=Blastocladiella emersonii GN=MPP1 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.121e-14
Identity = 43/97 (44.33%), Postives = 60/97 (61.86%), Query Frame = 3
Query:    6 DDIPLAQFAVAFAGASWTDPDSIARMVMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFGVYAVA-KPDCLDDLAYAIMYE 293
            DD+P A  A+A  GASWT  D    +V  AM+GS+++ + G  H  S+LAQ V  + +A S  +FNT Y DTGL+G+Y  +   D LDDLA+  + E
Sbjct:  265 DDMPTAHIALAVEGASWTSADHWPLLVASAMIGSYDR-AAGNAHPSSKLAQIVAKHNLANSFTSFNTTYSDTGLWGIYIQSNNRDNLDDLAHFTVRE 360          
BLAST of CN191963 vs. ExPASy Swiss-Prot
Match: MPPB_SCHPO (Probable mitochondrial-processing peptidase subunit beta OS=Schizosaccharomyces pombe GN=qcr1 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.464e-14
Identity = 37/92 (40.22%), Postives = 57/92 (61.96%), Query Frame = 3
Query:    6 DDIPLAQFAVAFAGASWTDPDSIARMVMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFGVYAVAKP-DCLDDLAY 278
            DD P A  A+A  G SW  PD    +VMQA++G+W++      H+ S L+  V  +++A S M+F+T+Y DTGL+G+Y V +    +DDL +
Sbjct:  257 DDSPTANIAIAVEGMSWKHPDYFTALVMQAIIGNWDRAMGASPHLSSRLSTIVQQHQLANSFMSFSTSYSDTGLWGIYLVTENLGRIDDLVH 348          
BLAST of CN191963 vs. ExPASy Swiss-Prot
Match: MPPB_MOUSE (Mitochondrial-processing peptidase subunit beta OS=Mus musculus GN=Pmpcb PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.912e-14
Identity = 34/96 (35.42%), Postives = 56/96 (58.33%), Query Frame = 3
Query:    6 DDIPLAQFAVAFAGASWTDPDSIARMVMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYE 293
            D +PLA  A+A     W  PD+I  MV   ++G+W+++  GG ++ S+LAQ      +  S  +FNT+Y DTGL+G+Y V +   + D+ + +  E
Sbjct:  289 DKMPLAHLAIAVEAVGWAHPDTICLMVANTLIGNWDRSFGGGMNLSSKLAQLTCHGNLCHSFQSFNTSYTDTGLWGLYMVCEQATVADMLHVVQNE 384          
The following BLAST results are available for this feature:
BLAST of CN191963 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
MPPB_ARATH3.024e-4484.85Probable mitochondrial-processing peptidase subuni... [more]
MPPB_DICDI2.413e-1742.71Mitochondrial-processing peptidase subunit beta OS... [more]
MPPB_RAT1.014e-1538.54Mitochondrial-processing peptidase subunit beta OS... [more]
MPPB_BOVIN1.014e-1537.50Mitochondrial-processing peptidase subunit beta OS... [more]
MPPB_PONAB1.324e-1536.46Mitochondrial-processing peptidase subunit beta OS... [more]
MPPB_NEUCR5.031e-1541.00Mitochondrial-processing peptidase subunit beta OS... [more]
MPPB_HUMAN1.121e-1435.42Mitochondrial-processing peptidase subunit beta OS... [more]
MPPB_BLAEM1.121e-1444.33Mitochondrial-processing peptidase subunit beta OS... [more]
MPPB_SCHPO1.464e-1440.22Probable mitochondrial-processing peptidase subuni... [more]
MPPB_MOUSE1.912e-1435.42Mitochondrial-processing peptidase subunit beta OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0006C04_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0006C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN191963 ID=CN191963; Name=CN191963; organism=Citrus sinensis; type=EST; length=304bp
GAGGTGACGATATTCCTTTGGCACAATTTGCGGTTGCTTTCGCTGGAGCA
TCTTGGACAGATCCAGATTCAATTGCCAGGATGGTTATGCAGGCAATGTT
GGGTTCATGGAATAAAAATTCAGTGGGTGGAAAGCACATGGGTTCCGAGC
TGGCACAGAGAGTTGGCATTAATGAAATTGCAGAAAGCATGATGGCCTTC
AACACGAACTACAAAGACACTGGTCTGTTTGGTGTTTATGCTGTTGCTAA
GCCGGATTGCTTAGATGATTTGGCCTATGCAATTATGTACGAGACTACCA
AGTT
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