CN191962

Overview
NameCN191962
Unique NameCN191962
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length582
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig168 contig Csv1_Contig168:81..659. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN191962 vs. ExPASy Swiss-Prot
Match: MPPB_ARATH (Probable mitochondrial-processing peptidase subunit beta OS=Arabidopsis thaliana GN=At3g02090 PE=1 SV=2)

HSP 1 Score: 54.299 bits (129), Expect = 6.415e-17
Identity = 25/30 (83.33%), Postives = 29/30 (96.67%), Query Frame = -3 
Query:  476 IPFAELFARIDSVDASTVKRVANRFIYDRD 565
            IP AELFARID+VDASTVKRVAN++IYD+D
Sbjct:  475 IPTAELFARIDAVDASTVKRVANKYIYDKD 504

HSP 2 Score: 53.9138 bits (128), Expect = 6.415e-17
Identity = 23/27 (85.19%), Postives = 25/27 (92.59%), Query Frame = -1 
Query:  394 IAIAAMGPIQGLPDYNWFRRRTYWNRY 474
            IAI+A+GPIQ LPDYN FRRRTYWNRY
Sbjct:  505 IAISAIGPIQDLPDYNKFRRRTYWNRY 531
The following BLAST results are available for this feature:
BLAST of CN191962 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
MPPB_ARATH6.415e-1783.33Probable mitochondrial-processing peptidase subuni... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS06_0006C04_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0006C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN191962 ID=CN191962; Name=CN191962; organism=Citrus sinensis; type=EST; length=582bp
TAACACTTTAATTATTATTTACCAATCAAATTAGGAGGCAGGCAGTTGAG
CCACCAATGCAACCAACCAGAAACATTAATGCCTTGAAAACGAAAGGCAA
TATGATGTGATGCAGCTGAAAATTTATCATCATTCAAAGCTGTCACTTGA
GCTGTTAAGCTCAAAGCAATGAAAATCCGAGGGCCAAATCACTGAAGAGT
GAAGACAGCTTACTTATTTCCTGAACAAATTATGAAGTTACAGAAGCAAG
AGCTAGAAAAGAATTCAATAAAATACCATAGCCCTGAAGCCTCTCCCAAG
GGCATTGATTGTGTAAATTGCAACCCAAAAATTGTTTGAAATCTCCGCCC
AGGAAGGCGGGGATGCAGTAATGAACAACCATGAGATAACTTAGTATCTA
TTCCAGTAGGTTCTGCGTCTGAACCAGTTGTAGTCGGGTAAACCTTGAAT
TGGACCCATTGCAGCAATTGCGATAATCCCTGTCGTAAATAAATCTGTTT
GCAACGCGCTTGACAGTGCTTGCATCTACGGAGTCTATCCTAGCAAACAA
TTCAGCAAATGGGATTCCTTCGACCATATGTA
back to top