CN191952

Overview
NameCN191952
Unique NameCN191952
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length620
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12795 contig Csv1_Contig12795:154..773. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
BLAST of CN191952 vs. ExPASy Swiss-Prot
Match: PLSC_LIMDO (1-acyl-sn-glycerol-3-phosphate acyltransferase OS=Limnanthes douglasii GN=PLSC PE=2 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 5.512e-68
Identity = 100/134 (74.63%), Postives = 119/134 (88.81%), Query Frame = 3
Query:  219 IIWYPLFGQLYVLAKHIRIDRSNPSAAIQSLKEAAHAIVKDNLSLIIFPEGTRSQNGRLLPFKKGFVHMALQSRLPIVPIVLSGTHRAWRKGSLHIRPVPITVKYLPPXSTSDWTADKLDDYIKMVHDMYVKNL 620
            +IWYPL GQLY LA HIRIDRSNP+AAIQS+KEA   I + NLSLI+FPEGTRS++GRLLPFKKGFVH+ALQS LPIVP++L+GTH AWRKG+  +RPVPITVKYLPP +T DWT DK+DDY+KM+HD+YV+NL
Sbjct:  134 VIWYPLLGQLYTLAHHIRIDRSNPAAAIQSMKEAVRVITEKNLSLIMFPEGTRSRDGRLLPFKKGFVHLALQSHLPIVPMILTGTHLAWRKGTFRVRPVPITVKYLPPINTDDWTVDKIDDYVKMIHDVYVRNL 267          

HSP 2 Score: 53.9138 bits (128), Expect = 5.512e-68
Identity = 25/34 (73.53%), Postives = 27/34 (79.41%), Query Frame = 2
Query:    5 ISNHASPIDIFLLMWLTPTGTVGIAKKEV*VNPL 106
            ISNHASPID F +MWL P GTVG+AKKEV   PL
Sbjct:  106 ISNHASPIDAFFVMWLAPIGTVGVAKKEVIWYPL 139          
BLAST of CN191952 vs. ExPASy Swiss-Prot
Match: PLSC_LIMAL (1-acyl-sn-glycerol-3-phosphate acyltransferase OS=Limnanthes alba PE=2 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 1.222e-67
Identity = 100/134 (74.63%), Postives = 118/134 (88.06%), Query Frame = 3
Query:  219 IIWYPLFGQLYVLAKHIRIDRSNPSAAIQSLKEAAHAIVKDNLSLIIFPEGTRSQNGRLLPFKKGFVHMALQSRLPIVPIVLSGTHRAWRKGSLHIRPVPITVKYLPPXSTSDWTADKLDDYIKMVHDMYVKNL 620
            +IWYPL GQLY LA HIRIDRSNP+AAIQS+KEA   I + NLSLI+FPEGTRS +GRLLPFKKGFVH+ALQS LPIVP++L+GTH AWRKG+  +RPVPITVKYLPP +T DWT DK+DDY+KM+HD+YV+NL
Sbjct:  134 VIWYPLLGQLYTLAHHIRIDRSNPAAAIQSMKEAVRVITEKNLSLIMFPEGTRSGDGRLLPFKKGFVHLALQSHLPIVPMILTGTHLAWRKGTFRVRPVPITVKYLPPINTDDWTVDKIDDYVKMIHDIYVRNL 267          

HSP 2 Score: 53.9138 bits (128), Expect = 1.222e-67
Identity = 25/34 (73.53%), Postives = 27/34 (79.41%), Query Frame = 2
Query:    5 ISNHASPIDIFLLMWLTPTGTVGIAKKEV*VNPL 106
            ISNHASPID F +MWL P GTVG+AKKEV   PL
Sbjct:  106 ISNHASPIDAFFVMWLAPIGTVGVAKKEVIWYPL 139          
BLAST of CN191952 vs. ExPASy Swiss-Prot
Match: PLSC_COCNU (1-acyl-sn-glycerol-3-phosphate acyltransferase OS=Cocos nucifera PE=1 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 9.237e-62
Identity = 96/134 (71.64%), Postives = 114/134 (85.07%), Query Frame = 3
Query:  219 IIWYPLFGQLYVLAKHIRIDRSNPSAAIQSLKEAAHAIVKDNLSLIIFPEGTRSQNGRLLPFKKGFVHMALQSRLPIVPIVLSGTHRAWRKGSLHIRPVPITVKYLPPXSTSDWTADKLDDYIKMVHDMYVKNL 620
            IIWYPLFGQLYVLA H RIDRSNPSAAI+S+KE A A+VK NLSLIIFPEGTRS+ GRLLPFKKGF+H+ALQ+RLPIVP+VL+GTH AWRK SL +RP PITVKY  P  T DW  +K++ Y++M+H +YV +L
Sbjct:  155 IIWYPLFGQLYVLANHQRIDRSNPSAAIESIKEVARAVVKKNLSLIIFPEGTRSKTGRLLPFKKGFIHIALQTRLPIVPMVLTGTHLAWRKNSLRVRPAPITVKYFSPIKTDDWEEEKINHYVEMIHALYVDHL 288          

HSP 2 Score: 48.1358 bits (113), Expect = 9.237e-62
Identity = 23/34 (67.65%), Postives = 26/34 (76.47%), Query Frame = 2
Query:    5 ISNHASPIDIFLLMWLTPTGTVGIAKKEV*VNPL 106
            I NHAS +DIFL+MWL P GTV IAKKE+   PL
Sbjct:  127 ICNHASLVDIFLIMWLIPKGTVTIAKKEIIWYPL 160          
BLAST of CN191952 vs. ExPASy Swiss-Prot
Match: PLSC_HAEIN (1-acyl-sn-glycerol-3-phosphate acyltransferase OS=Haemophilus influenzae GN=plsC PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.477e-18
Identity = 49/140 (35.00%), Postives = 75/140 (53.57%), Query Frame = 3
Query:  216 TIIWYPLFGQLYVLAKHIRIDRSNPSAAIQSLKEAAHAIVKDNLSLIIFPEGTRSQNGRLLPFKKGFVHMALQSRLPIVPIVLSGTH-----RAWRKGSLHIRPVPITVKYLPPXSTSDWTADKLDDYIKMVHDMYVKNL 620
            ++IW P FG LY +  +I +DR N + A  ++ + A  I +DNLS+ +FPEGTR++   LLPFK G  H A+ + +PI+P+V S TH       W  G        +  + + P   S +T D + D     HD+  K +
Sbjct:   97 SLIWIPFFGILYWVTGNIFLDRENRTKAHNTMSQLARRINEDNLSIWMFPEGTRNRGRGLLPFKTGAFHAAISAGVPIIPVVCSSTHNKINLNRWDNGK-------VICEIMDPIDVSGYTKDNVRDLAAYCHDLMEKRI 229          
BLAST of CN191952 vs. ExPASy Swiss-Prot
Match: PLSC_ECOLI (1-acyl-sn-glycerol-3-phosphate acyltransferase OS=Escherichia coli (strain K12) GN=plsC PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 6.860e-16
Identity = 45/120 (37.50%), Postives = 69/120 (57.50%), Query Frame = 3
Query:  216 TIIWYPLFGQLYVLAKHIRIDRSNPSAAIQSLKEAAHAIVKDNLSLIIFPEGTRSQNGRLLPFKKGFVHMALQSRLPIVPIVLSGTHRAWRKGSLHIRPVPITVKYLPPXSTSDWTADKL 575
            +++W P FGQLY L  ++ IDR+N + A  ++ E  +   K  +S+ +FPEGTRS+   LLPFK G  H A+ + +PI+P+ +S T        LH   V   V+ LPP   S +  D++
Sbjct:   97 SLLWIPFFGQLYWLTGNLLIDRNNRTKAHGTIAEVVNHFKKRRISIWMFPEGTRSRGRGLLPFKTGAFHAAIAAGVPIIPVCVSTTSNKINLNRLHNGLV--IVEMLPPIDVSQYGKDQV 214          
BLAST of CN191952 vs. ExPASy Swiss-Prot
Match: PLSC_SALTY (1-acyl-sn-glycerol-3-phosphate acyltransferase OS=Salmonella typhimurium GN=plsC PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.446e-15
Identity = 43/120 (35.83%), Postives = 69/120 (57.50%), Query Frame = 3
Query:  216 TIIWYPLFGQLYVLAKHIRIDRSNPSAAIQSLKEAAHAIVKDNLSLIIFPEGTRSQNGRLLPFKKGFVHMALQSRLPIVPIVLSGTHRAWRKGSLHIRPVPITVKYLPPXSTSDWTADKL 575
            +++W P FGQLY L  ++ IDR+N + A  ++    +   K  +S+ +FPEGTRS+   LLPFK G  H A+ + +PI+P+ +S T        L+   V   V+ LPP   S++  D++
Sbjct:   97 SLLWIPFFGQLYWLTGNLLIDRNNRAKAHSTIAAVVNHFKKRRISIWMFPEGTRSRGRGLLPFKTGAFHAAIAAGVPIIPVCVSNTSNKVNLNRLNNGLV--IVEMLPPVDVSEYGKDQV 214          
BLAST of CN191952 vs. ExPASy Swiss-Prot
Match: PLSC_SALTI (1-acyl-sn-glycerol-3-phosphate acyltransferase OS=Salmonella typhi GN=plsC PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.446e-15
Identity = 43/120 (35.83%), Postives = 69/120 (57.50%), Query Frame = 3
Query:  216 TIIWYPLFGQLYVLAKHIRIDRSNPSAAIQSLKEAAHAIVKDNLSLIIFPEGTRSQNGRLLPFKKGFVHMALQSRLPIVPIVLSGTHRAWRKGSLHIRPVPITVKYLPPXSTSDWTADKL 575
            +++W P FGQLY L  ++ IDR+N + A  ++    +   K  +S+ +FPEGTRS+   LLPFK G  H A+ + +PI+P+ +S T        L+   V   V+ LPP   S++  D++
Sbjct:   97 SLLWIPFFGQLYWLTGNLLIDRNNRAKAHSTIAAVVNHFKKRRISIWMFPEGTRSRGRGLLPFKTGAFHAAIAAGVPIIPVCVSNTSNKVNLNRLNNGLV--IVEMLPPVDVSEYGKDQV 214          
BLAST of CN191952 vs. ExPASy Swiss-Prot
Match: PLCA_MOUSE (1-acyl-sn-glycerol-3-phosphate acyltransferase alpha OS=Mus musculus GN=Agpat1 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 9.905e-15
Identity = 44/118 (37.29%), Postives = 66/118 (55.93%), Query Frame = 3
Query:  219 IIWYPLFGQLYVLAKHIRIDRSNPSAAIQSLKEAAHAIVKDNLSLIIFPEGTRSQNGRLLPFKKGFVHMALQSRLPIVPIVLSGTHRAW-RKGSLHIRPVPITVKYLPPXSTSDWTAD 569
            ++W    G    LA  I IDR     AI  + E A  ++  ++ + +FPEGTR+ NG +LPFK+G  H+A+Q+++PI+PIV+S     + +K      P    V+ LPP ST   T D
Sbjct:  126 LLWAGSAGLACWLAGIIFIDRKRTGDAISVMSEVAQTLLTQDVRVWVFPEGTRNHNGSMLPFKRGAFHLAVQAQVPIIPIVMSSYQDFYSKKERRFTSPGRCQVRVLPPVSTEGLTPD 243          
BLAST of CN191952 vs. ExPASy Swiss-Prot
Match: PLCA_HUMAN (1-acyl-sn-glycerol-3-phosphate acyltransferase alpha OS=Homo sapiens GN=AGPAT1 PE=2 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.294e-14
Identity = 43/117 (36.75%), Postives = 63/117 (53.85%), Query Frame = 3
Query:  219 IIWYPLFGQLYVLAKHIRIDRSNPSAAIQSLKEAAHAIVKDNLSLIIFPEGTRSQNGRLLPFKKGFVHMALQSRLPIVPIVLSGTHRAWRKGSLHIRPVPITVKYLPPXSTSDWTAD 569
            ++W    G    LA  I IDR     AI  + E A  ++  ++ + +FPEGTR+ NG +LPFK+G  H+A+Q+++PIVPIV+S     + K           V+ LPP  T   T D
Sbjct:  129 LLWAGSAGLACWLAGVIFIDRKRTGDAISVMSEVAQTLLTQDVRVWVFPEGTRNHNGSMLPFKRGAFHLAVQAQVPIVPIVMSSYQDFYCKKERRFTSGQCQVRVLPPVPTEGLTPD 245          
BLAST of CN191952 vs. ExPASy Swiss-Prot
Match: PLSC_YEAST (Probable 1-acyl-sn-glycerol-3-phosphate acyltransferase OS=Saccharomyces cerevisiae GN=SLC1 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.882e-14
Identity = 47/134 (35.07%), Postives = 68/134 (50.75%), Query Frame = 3
Query:  225 WYPLFGQLYVLAKHIRIDRSNPSAAIQSLKEAAHAIVKDNLSLIIFPEGTRSQNGRL--LPFKKGFVHMALQSRLPIVPIVLSGTHRAWRKGSLHIRPVPITVKYLPPXSTSDWTADKLDDYIKMVHDMYVKNL 620
            + P  G    L+    +DRS    AI +L +    + K+  +L +FPEGTRS    L  LPFKKG  H+A Q ++PIVP+V+S T               + V+ L P ST + T DK+ ++ + V D  V  L
Sbjct:  109 YVPFLGWFMALSGTYFLDRSKRQEAIDTLNKGLENVKKNKRALWVFPEGTRSYTSELTMLPFKKGAFHLAQQGKIPIVPVVVSNTSTLVSPKYGVFNRGCMIVRILKPISTENLTKDKIGEFAEKVRDQMVDTL 242          
The following BLAST results are available for this feature:
BLAST of CN191952 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
PLSC_LIMDO5.512e-6874.631-acyl-sn-glycerol-3-phosphate acyltransferase OS=... [more]
PLSC_LIMAL1.222e-6774.631-acyl-sn-glycerol-3-phosphate acyltransferase OS=... [more]
PLSC_COCNU9.237e-6271.641-acyl-sn-glycerol-3-phosphate acyltransferase OS=... [more]
PLSC_HAEIN1.477e-1835.001-acyl-sn-glycerol-3-phosphate acyltransferase OS=... [more]
PLSC_ECOLI6.860e-1637.501-acyl-sn-glycerol-3-phosphate acyltransferase OS=... [more]
PLSC_SALTY4.446e-1535.831-acyl-sn-glycerol-3-phosphate acyltransferase OS=... [more]
PLSC_SALTI4.446e-1535.831-acyl-sn-glycerol-3-phosphate acyltransferase OS=... [more]
PLCA_MOUSE9.905e-1537.291-acyl-sn-glycerol-3-phosphate acyltransferase alp... [more]
PLCA_HUMAN1.294e-1436.751-acyl-sn-glycerol-3-phosphate acyltransferase alp... [more]
PLSC_YEAST2.882e-1435.07Probable 1-acyl-sn-glycerol-3-phosphate acyltransf... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0006B22_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0006B22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN191952 ID=CN191952; Name=CN191952; organism=Citrus sinensis; type=EST; length=620bp
GAGGATAAGCAATCATGCGTCTCCTATCGACATCTTTCTCCTAATGTGGT
TGACTCCAACGGGCACTGTTGGCATTGCAAAGAAAGAGGTATGAGTTAAT
CCTTTAAGAATTAACCTTGAATCTAATTTTGGCTTTCAGTTTGTGTGATT
TCTGAACGCCTCTGGACTGATTGACTTCATTGATGCATTTGTGGGTTTAT
GTTCTTGAAATCAACACGATCATATGGTATCCTCTATTTGGGCAACTTTA
TGTTTTGGCCAAACATATCCGCATAGATCGCTCCAACCCGAGTGCAGCCA
TCCAGTCTTTGAAAGAGGCGGCTCATGCTATTGTGAAAGACAATCTGTCT
TTGATCATATTTCCTGAGGGCACCAGGTCCCAAAATGGAAGACTGCTTCC
CTTCAAAAAGGGTTTTGTTCATATGGCGTTGCAATCCCGCCTCCCAATAG
TTCCAATTGTCCTATCCGGTACCCATCGAGCATGGAGGAAGGGCAGCTTA
CATATTCGGCCAGTACCTATAACTGTAAAGTACCTTCCTCCGANTAGTAC
CAGTGACTGGACAGCTGACAAGCTTGATGATTACATAAAAATGGTGCACG
ACATGTATGTCAAAAACCTC
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